Wall clock time and date at job start Mon Mar 30 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38197 * 120.02320 * 2 1 4 4 C 1.38238 * 120.07734 * 179.69891 * 3 2 1 5 5 C 1.38288 * 120.11586 * 0.55440 * 4 3 2 6 6 C 1.50698 * 119.97753 * 179.72875 * 5 4 3 7 7 H 1.09008 * 109.46977 * 219.72237 * 6 5 4 8 8 N 1.46904 * 109.46837 * 339.71495 * 6 5 4 9 9 C 1.52997 * 109.47721 * 99.72088 * 6 5 4 10 10 C 1.50701 * 109.47212 * 174.99887 * 9 6 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 6 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 6 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.38216 * 120.04495 * 359.44069 * 5 4 3 19 19 Cl 1.73602 * 120.04019 * 180.29684 * 18 5 4 20 20 C 1.38659 * 120.02061 * 179.97438 * 2 1 3 21 21 O 1.35927 * 120.06376 * 0.04912 * 20 2 1 22 22 H 1.08988 * 109.47266 * 270.02546 * 1 2 3 23 23 H 1.09009 * 109.46664 * 30.02653 * 1 2 3 24 24 H 1.08997 * 109.46784 * 150.02095 * 1 2 3 25 25 H 1.07999 * 119.95640 * 359.97438 * 3 2 1 26 26 H 1.07996 * 119.94226 * 180.29636 * 4 3 2 27 27 H 1.00898 * 111.00551 * 296.05373 * 8 6 5 28 28 H 1.00898 * 110.99372 * 60.01160 * 8 6 5 29 29 H 1.09002 * 109.47153 * 54.99889 * 9 6 5 30 30 H 1.09001 * 109.46832 * 295.00079 * 9 6 5 31 31 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 32 32 H 0.96708 * 113.99946 * 269.98007 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1965 0.0000 4 6 3.5809 1.1979 0.0063 5 6 4.2759 0.0023 0.0010 6 6 5.7829 0.0074 0.0017 7 1 6.1492 -0.7787 -0.6586 8 7 6.2683 1.3105 -0.4722 9 6 6.2932 -0.2410 1.4225 10 6 7.7955 -0.3582 1.4034 11 1 8.3327 -0.2644 0.4711 12 6 8.4844 -0.5841 2.5762 13 7 7.8303 -0.6978 3.7114 14 14 10.3466 -0.7286 2.5525 15 1 10.9498 0.6142 2.7479 16 1 10.7869 -1.6328 3.6452 17 1 10.7836 -1.2822 1.2458 18 6 3.5894 -1.1973 0.0011 19 17 4.4620 -2.6980 0.0023 20 6 2.2008 -1.2006 0.0005 21 8 1.5229 -2.3787 0.0001 22 1 -0.3633 0.0005 1.0275 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6582 2.1316 -0.0004 26 1 4.1190 2.1342 0.0111 27 1 5.9987 1.4698 -1.4313 28 1 5.9420 2.0563 0.1239 29 1 5.8616 -1.1650 1.8072 30 1 6.0017 0.5908 2.0639 31 1 8.3149 -0.8571 4.5365 32 1 1.3263 -2.7198 0.8834 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260327835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:26 Heat of formation + Delta-G solvation = -58.668171 kcal Electronic energy + Delta-G solvation = -16659.384877 eV Core-core repulsion = 13837.406270 eV Total energy + Delta-G solvation = -2821.978606 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.15281 -38.53179 -37.40401 -36.50760 -34.59577 -32.73543 -31.03087 -30.05960 -28.04256 -25.66534 -23.66264 -23.11445 -21.37506 -18.96707 -18.42930 -17.52746 -17.28188 -16.69714 -16.33491 -16.18557 -15.37553 -14.85982 -14.60899 -14.31329 -14.09201 -13.68536 -13.36770 -13.25216 -13.16772 -12.73569 -12.57049 -12.45966 -12.18851 -12.12860 -11.98122 -11.54147 -11.41059 -11.14243 -10.49124 -9.62642 -9.52550 -9.38476 -8.10599 -6.15792 0.09378 0.15823 1.23070 1.42153 1.43059 1.54120 2.43508 2.49882 3.13676 3.22968 3.71209 3.84649 3.90908 4.12536 4.29041 4.46108 4.51876 4.70279 4.80288 4.84027 4.93502 5.13661 5.23119 5.32562 5.41583 5.52264 5.69488 5.76314 5.88267 6.30285 6.48235 6.68089 6.79913 6.97252 7.49938 9.01318 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030116 B = 0.006151 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.528797 B = 4550.891701 C = 4960.860348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.112 4.112 3 C -0.092 4.092 4 C -0.126 4.126 5 C -0.106 4.106 6 C 0.146 3.854 7 H 0.069 0.931 8 N -0.827 5.827 9 C 0.050 3.950 10 C -0.503 4.503 11 H 0.057 0.943 12 C -0.003 4.003 13 N -0.938 5.938 14 Si 0.957 3.043 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.268 1.268 18 C -0.077 4.077 19 Cl -0.069 7.069 20 C 0.106 3.894 21 O -0.491 6.491 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.166 0.834 26 H 0.144 0.856 27 H 0.343 0.657 28 H 0.342 0.658 29 H 0.003 0.997 30 H -0.012 1.012 31 H 0.259 0.741 32 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.675 2.896 -7.662 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.113 4.113 3 C -0.110 4.110 4 C -0.144 4.144 5 C -0.110 4.110 6 C 0.033 3.967 7 H 0.087 0.913 8 N -0.358 5.358 9 C 0.013 3.987 10 C -0.541 4.541 11 H 0.076 0.924 12 C -0.199 4.199 13 N -0.580 5.580 14 Si 0.783 3.217 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.193 1.193 18 C -0.104 4.104 19 Cl -0.040 7.040 20 C 0.060 3.940 21 O -0.303 6.303 22 H 0.101 0.899 23 H 0.106 0.894 24 H 0.090 0.910 25 H 0.183 0.817 26 H 0.162 0.838 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.021 0.979 30 H 0.006 0.994 31 H 0.068 0.932 32 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -14.788 2.491 -7.963 16.979 hybrid contribution 0.300 -0.397 0.803 0.945 sum -14.488 2.094 -7.160 16.296 Atomic orbital electron populations 1.20712 0.87633 1.04107 1.03499 1.20475 0.98543 0.91091 1.01200 1.21361 0.93170 0.98665 0.97816 1.21201 0.95112 0.97000 1.01082 1.21049 0.98790 0.92350 0.98769 1.20343 0.85583 0.92420 0.98320 0.91302 1.58663 1.67456 1.02969 1.06672 1.18885 0.95152 0.94843 0.89868 1.21455 0.92975 1.46258 0.93430 0.92449 1.25838 1.02958 0.95761 0.95379 1.70095 1.37079 1.51928 0.98874 0.85559 0.80508 0.77979 0.77631 1.20022 1.21186 1.19259 1.21510 0.92312 0.87829 1.08788 1.98359 1.76518 1.32331 1.96774 1.18132 0.87041 0.86949 1.01878 1.84739 1.75416 1.35234 1.34922 0.89850 0.89363 0.91007 0.81657 0.83812 0.84403 0.84328 0.97892 0.99386 0.93226 0.73626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 9.79 71.24 0.70 -0.91 16 2 C -0.11 -2.62 5.89 -19.77 -0.12 -2.74 16 3 C -0.09 -2.07 9.70 22.26 0.22 -1.85 16 4 C -0.13 -3.51 9.25 22.28 0.21 -3.31 16 5 C -0.11 -3.77 5.08 -19.86 -0.10 -3.87 16 6 C 0.15 6.05 2.37 44.17 0.10 6.16 16 7 H 0.07 3.08 7.35 -2.38 -0.02 3.06 16 8 N -0.83 -29.81 8.43 -171.79 -1.45 -31.26 16 9 C 0.05 2.63 4.54 29.85 0.14 2.76 16 10 C -0.50 -29.04 8.84 25.60 0.23 -28.82 16 11 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 12 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 13 N -0.94 -58.00 13.29 21.45 0.28 -57.71 16 14 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 15 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 C -0.08 -2.69 6.32 22.41 0.14 -2.55 16 19 Cl -0.07 -2.59 26.19 -2.72 -0.07 -2.67 16 20 C 0.11 3.05 6.67 22.52 0.15 3.20 16 21 O -0.49 -12.27 12.01 -92.73 -1.11 -13.39 16 22 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.09 1.03 8.09 -2.38 -0.02 1.01 16 24 H 0.07 1.16 7.53 -2.39 -0.02 1.14 16 25 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 26 H 0.14 3.49 6.24 -2.91 -0.02 3.47 16 27 H 0.34 10.06 9.06 -89.70 -0.81 9.25 16 28 H 0.34 11.40 7.28 -89.70 -0.65 10.75 16 29 H 0.00 0.16 7.29 -2.39 -0.02 0.14 16 30 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.41 6.98 9.06 -74.05 -0.67 6.31 16 Total: -1.00 -70.50 286.99 0.84 -69.66 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.96 Total: 18.92 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 2.12 Total: -31.64 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -1.16 Total: -88.97 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.11 Total: -13.39 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -0.07 Total: -2.67 kcal Total: -70.50 0.84 -69.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260327835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.994 kcal (2) G-P(sol) polarization free energy of solvation -70.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds