Wall clock time and date at job start Mon Mar 30 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35929 * 116.99923 * 2 1 4 4 C 1.38702 * 120.05940 * 90.00362 * 3 2 1 5 5 C 1.50706 * 120.02068 * 0.02562 * 4 3 2 6 6 C 1.38148 * 119.96102 * 179.97438 * 4 3 2 7 7 C 1.38289 * 120.07135 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.93617 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.47556 * 339.99752 * 8 7 6 10 10 N 1.46905 * 109.46910 * 219.99791 * 8 7 6 11 11 C 1.50700 * 109.47079 * 99.99948 * 8 7 6 12 12 H 1.08003 * 120.00031 * 359.97438 * 11 8 7 13 13 C 1.37877 * 119.99851 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00267 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99704 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46870 * 90.00154 * 15 13 11 17 17 H 1.48496 * 109.47201 * 209.99679 * 15 13 11 18 18 H 1.48497 * 109.47507 * 330.00049 * 15 13 11 19 19 C 1.38243 * 120.11923 * 0.27005 * 7 6 4 20 20 C 1.38257 * 120.04226 * 359.45665 * 19 7 6 21 21 Cl 1.73598 * 120.03765 * 180.26887 * 20 19 7 22 22 H 1.09004 * 109.46839 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46708 * 299.99569 * 1 2 3 24 24 H 1.08995 * 109.47689 * 59.99685 * 1 2 3 25 25 H 1.09004 * 109.46655 * 269.97750 * 5 4 3 26 26 H 1.08995 * 109.47358 * 29.97817 * 5 4 3 27 27 H 1.08997 * 109.46889 * 149.98109 * 5 4 3 28 28 H 1.07994 * 119.96928 * 179.97438 * 6 4 3 29 29 H 1.00901 * 110.99869 * 300.00472 * 10 8 7 30 30 H 1.00896 * 110.99543 * 63.95595 * 10 8 7 31 31 H 0.97003 * 119.99846 * 180.02562 * 14 13 11 32 32 H 1.07998 * 119.97942 * 179.72699 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3616 1.8301 1.2005 5 6 2.0209 1.1601 2.5067 6 6 2.9892 3.0608 1.1981 7 6 3.3028 3.6764 0.0002 8 6 3.9869 5.0192 0.0011 9 1 3.8385 5.5020 0.9670 10 7 3.4162 5.8602 -1.0595 11 6 5.4618 4.8317 -0.2453 12 1 5.8636 3.8394 -0.3880 13 6 6.2981 5.9269 -0.2888 14 7 5.8088 7.1353 -0.1156 15 14 8.1264 5.6944 -0.5936 16 1 8.3949 5.7430 -2.0533 17 1 8.8830 6.7770 0.0852 18 1 8.5547 4.3785 -0.0551 19 6 2.9843 3.0651 -1.1982 20 6 2.3613 1.8309 -1.2015 21 17 1.9677 1.0602 -2.7064 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.0231 1.4651 2.8220 26 1 2.0463 0.0781 2.3775 27 1 2.7469 1.4526 3.2652 28 1 3.2345 3.5431 2.1327 29 1 3.5412 5.4340 -1.9655 30 1 2.4420 6.0541 -0.8824 31 1 6.3972 7.9058 -0.1465 32 1 3.2263 3.5499 -2.1324 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260379992.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:22 Heat of formation + Delta-G solvation = -24.341072 kcal Electronic energy + Delta-G solvation = -16702.332162 eV Core-core repulsion = 13881.842090 eV Total energy + Delta-G solvation = -2820.490072 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88139 -37.46054 -36.24013 -34.44090 -32.21469 -31.29366 -29.33319 -27.43565 -26.19604 -25.69092 -22.67019 -21.92185 -19.69416 -17.57829 -16.62168 -16.07131 -15.55505 -15.32927 -14.52264 -14.26164 -13.95513 -13.68535 -13.35031 -12.96172 -12.65762 -12.41101 -12.30266 -11.99483 -11.57516 -11.40328 -11.07555 -10.97771 -10.82702 -10.67899 -10.53856 -9.87055 -9.75969 -9.26269 -8.48023 -8.30095 -7.96212 -7.16513 -5.93020 -4.08617 1.48251 1.57908 2.41886 3.32216 3.39146 3.42521 3.69684 4.13478 4.46780 5.00539 5.25363 5.26601 5.31926 5.34455 5.53633 5.62727 5.70219 5.70885 5.82326 5.87024 6.04347 6.23544 6.30613 6.56417 6.73795 6.89885 7.08721 7.43076 7.65268 7.85736 8.09584 8.54818 8.92210 9.07683 9.60696 11.11160 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026490 B = 0.006234 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.759197 B = 4490.227946 C = 4877.990151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.327 6.327 3 C 0.070 3.930 4 C -0.094 4.094 5 C -0.107 4.107 6 C -0.106 4.106 7 C -0.058 4.058 8 C 0.255 3.745 9 H 0.051 0.949 10 N -0.809 5.809 11 C -0.533 4.533 12 H 0.055 0.945 13 C 0.085 3.915 14 N -0.846 5.846 15 Si 0.885 3.115 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.107 4.107 20 C -0.045 4.045 21 Cl -0.078 7.078 22 H 0.089 0.911 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.129 0.871 29 H 0.318 0.682 30 H 0.299 0.701 31 H 0.257 0.743 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.385 -10.513 1.251 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.025 3.975 4 C -0.095 4.095 5 C -0.164 4.164 6 C -0.125 4.125 7 C -0.061 4.061 8 C 0.145 3.855 9 H 0.069 0.931 10 N -0.335 5.335 11 C -0.572 4.572 12 H 0.073 0.927 13 C -0.122 4.122 14 N -0.480 5.480 15 Si 0.713 3.287 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.127 4.127 20 C -0.072 4.072 21 Cl -0.049 7.049 22 H 0.108 0.892 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.147 0.853 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.760 -9.976 1.357 14.022 hybrid contribution 0.248 -0.844 -0.630 1.082 sum -9.511 -10.820 0.727 14.424 Atomic orbital electron populations 1.22938 0.79839 1.02660 1.00500 1.86031 1.19314 1.24776 1.94241 1.18028 1.01434 0.87496 0.90509 1.20073 1.00321 0.94918 0.94176 1.20657 1.01417 1.00717 0.93573 1.21046 0.98550 0.93924 0.98958 1.21890 0.92592 1.00538 0.91092 1.18270 0.92989 0.81074 0.93150 0.93101 1.59196 1.17925 1.51917 1.04434 1.20808 0.90191 0.92955 1.53250 0.92704 1.24931 0.97902 0.95199 0.94158 1.70099 1.34340 0.97587 1.45975 0.86732 0.85789 0.77799 0.78414 1.20632 1.21225 1.19951 1.20832 0.99134 0.92876 0.99809 1.21312 1.04943 0.95105 0.85877 1.98323 1.92897 1.81458 1.32194 0.89214 0.93829 0.93710 0.91701 0.91153 0.91215 0.85268 0.86877 0.89056 0.93340 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 11.13 101.05 1.12 1.52 16 2 O -0.33 -4.97 8.92 -19.52 -0.17 -5.14 16 3 C 0.07 1.17 5.69 -39.20 -0.22 0.95 16 4 C -0.09 -1.53 5.89 -104.48 -0.62 -2.14 16 5 C -0.11 -1.35 9.79 36.01 0.35 -1.00 16 6 C -0.11 -1.91 9.32 -39.60 -0.37 -2.28 16 7 C -0.06 -1.17 4.89 -104.60 -0.51 -1.68 16 8 C 0.25 6.00 2.85 -70.01 -0.20 5.80 16 9 H 0.05 1.30 8.00 -51.93 -0.42 0.89 16 10 N -0.81 -18.17 8.36 -6.65 -0.06 -18.23 16 11 C -0.53 -14.21 8.70 -34.44 -0.30 -14.51 16 12 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 13 C 0.09 2.32 5.39 -17.82 -0.10 2.23 16 14 N -0.85 -23.98 12.77 55.43 0.71 -23.27 16 15 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.11 -2.03 9.07 -39.57 -0.36 -2.39 16 20 C -0.05 -0.80 6.33 -39.36 -0.25 -1.05 16 21 Cl -0.08 -1.22 28.50 -51.86 -1.48 -2.70 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.87 7.53 -51.93 -0.39 0.47 16 27 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 28 H 0.13 2.19 8.03 -52.49 -0.42 1.77 16 29 H 0.32 6.86 7.33 -39.29 -0.29 6.57 16 30 H 0.30 5.97 9.06 -39.29 -0.36 5.62 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.13 2.47 6.65 -52.49 -0.35 2.12 16 LS Contribution 291.77 15.07 4.40 4.40 Total: -1.00 -28.90 291.77 -6.94 -35.84 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.87 Total: 7.62 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -1.44 Total: -14.55 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.65 Total: -41.50 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.17 Total: -5.14 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.48 Total: -2.70 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.90 -6.94 -35.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379992.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.499 kcal (2) G-P(sol) polarization free energy of solvation -28.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds