Wall clock time and date at job start Mon Mar 30 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35929 * 116.99923 * 2 1 4 4 C 1.38702 * 120.05940 * 90.00362 * 3 2 1 5 5 C 1.50706 * 120.02068 * 0.02562 * 4 3 2 6 6 C 1.38148 * 119.96102 * 179.97438 * 4 3 2 7 7 C 1.38289 * 120.07135 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.93617 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.47556 * 339.99752 * 8 7 6 10 10 N 1.46905 * 109.46910 * 219.99791 * 8 7 6 11 11 C 1.50700 * 109.47079 * 99.99948 * 8 7 6 12 12 H 1.08003 * 120.00031 * 359.97438 * 11 8 7 13 13 C 1.37877 * 119.99851 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00267 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99704 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46870 * 90.00154 * 15 13 11 17 17 H 1.48496 * 109.47201 * 209.99679 * 15 13 11 18 18 H 1.48497 * 109.47507 * 330.00049 * 15 13 11 19 19 C 1.38243 * 120.11923 * 0.27005 * 7 6 4 20 20 C 1.38257 * 120.04226 * 359.45665 * 19 7 6 21 21 Cl 1.73598 * 120.03765 * 180.26887 * 20 19 7 22 22 H 1.09004 * 109.46839 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46708 * 299.99569 * 1 2 3 24 24 H 1.08995 * 109.47689 * 59.99685 * 1 2 3 25 25 H 1.09004 * 109.46655 * 269.97750 * 5 4 3 26 26 H 1.08995 * 109.47358 * 29.97817 * 5 4 3 27 27 H 1.08997 * 109.46889 * 149.98109 * 5 4 3 28 28 H 1.07994 * 119.96928 * 179.97438 * 6 4 3 29 29 H 1.00901 * 110.99869 * 300.00472 * 10 8 7 30 30 H 1.00896 * 110.99543 * 63.95595 * 10 8 7 31 31 H 0.97003 * 119.99846 * 180.02562 * 14 13 11 32 32 H 1.07998 * 119.97942 * 179.72699 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3616 1.8301 1.2005 5 6 2.0209 1.1601 2.5067 6 6 2.9892 3.0608 1.1981 7 6 3.3028 3.6764 0.0002 8 6 3.9869 5.0192 0.0011 9 1 3.8385 5.5020 0.9670 10 7 3.4162 5.8602 -1.0595 11 6 5.4618 4.8317 -0.2453 12 1 5.8636 3.8394 -0.3880 13 6 6.2981 5.9269 -0.2888 14 7 5.8088 7.1353 -0.1156 15 14 8.1264 5.6944 -0.5936 16 1 8.3949 5.7430 -2.0533 17 1 8.8830 6.7770 0.0852 18 1 8.5547 4.3785 -0.0551 19 6 2.9843 3.0651 -1.1982 20 6 2.3613 1.8309 -1.2015 21 17 1.9677 1.0602 -2.7064 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.0231 1.4651 2.8220 26 1 2.0463 0.0781 2.3775 27 1 2.7469 1.4526 3.2652 28 1 3.2345 3.5431 2.1327 29 1 3.5412 5.4340 -1.9655 30 1 2.4420 6.0541 -0.8824 31 1 6.3972 7.9058 -0.1465 32 1 3.2263 3.5499 -2.1324 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260379992.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:22 Heat of formation + Delta-G solvation = -42.369165 kcal Electronic energy + Delta-G solvation = -16703.113918 eV Core-core repulsion = 13881.842090 eV Total energy + Delta-G solvation = -2821.271828 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18801 -38.79428 -37.54892 -36.10373 -33.86293 -32.91516 -30.77631 -28.56626 -27.89409 -27.04890 -24.34258 -23.27802 -21.23080 -18.82812 -18.51390 -17.49828 -16.95337 -16.60912 -16.34655 -15.87603 -15.41101 -14.93777 -14.52972 -14.29422 -14.25395 -13.80519 -13.66300 -13.29168 -13.04500 -12.79182 -12.71695 -12.50574 -12.33004 -12.18360 -12.09326 -11.63623 -11.16635 -10.92934 -10.55778 -9.64011 -9.43445 -8.90086 -7.99365 -6.20600 0.10791 0.21710 1.08568 1.43012 1.45088 1.53785 2.37519 2.51167 2.85591 3.24932 3.76463 3.98619 4.23074 4.33829 4.39088 4.46012 4.48904 4.51264 4.60074 4.74941 4.80172 4.82816 5.09296 5.20267 5.27393 5.42368 5.68210 5.72607 5.77622 6.14123 6.46018 6.63174 7.07418 7.24559 7.51923 9.03841 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026490 B = 0.006234 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.759197 B = 4490.227946 C = 4877.990151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.336 6.336 3 C 0.077 3.923 4 C -0.091 4.091 5 C -0.104 4.104 6 C -0.112 4.112 7 C -0.079 4.079 8 C 0.262 3.738 9 H 0.023 0.977 10 N -0.819 5.819 11 C -0.544 4.544 12 H 0.044 0.956 13 C 0.040 3.960 14 N -0.877 5.877 15 Si 0.944 3.056 16 H -0.278 1.278 17 H -0.282 1.282 18 H -0.273 1.273 19 C -0.113 4.113 20 C -0.055 4.055 21 Cl -0.063 7.063 22 H 0.118 0.882 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.323 0.677 30 H 0.313 0.687 31 H 0.256 0.744 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 -12.255 1.618 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.253 6.253 3 C 0.032 3.968 4 C -0.091 4.091 5 C -0.160 4.160 6 C -0.131 4.131 7 C -0.082 4.082 8 C 0.152 3.848 9 H 0.040 0.960 10 N -0.346 5.346 11 C -0.583 4.583 12 H 0.062 0.938 13 C -0.164 4.164 14 N -0.512 5.512 15 Si 0.770 3.230 16 H -0.204 1.204 17 H -0.208 1.208 18 H -0.198 1.198 19 C -0.132 4.132 20 C -0.082 4.082 21 Cl -0.034 7.034 22 H 0.136 0.864 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.152 0.848 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.519 -11.734 1.723 15.852 hybrid contribution 0.358 -0.422 -0.750 0.933 sum -10.160 -12.156 0.973 15.873 Atomic orbital electron populations 1.23215 0.77449 1.04791 1.01051 1.86000 1.21458 1.23643 1.94246 1.18169 1.00706 0.87626 0.90301 1.20384 0.98907 0.94079 0.95773 1.20734 1.02878 1.00722 0.91703 1.21140 0.98785 0.94803 0.98382 1.21483 0.94540 0.99597 0.92591 1.17892 0.92119 0.82945 0.91883 0.95953 1.59008 1.18979 1.52216 1.04431 1.21087 0.92209 0.92351 1.52617 0.93818 1.25599 1.01651 0.95022 0.94148 1.70206 1.35586 0.98132 1.47300 0.85809 0.81341 0.77681 0.78184 1.20430 1.20761 1.19768 1.20720 0.99801 0.93630 0.99080 1.21381 1.04899 0.94882 0.87052 1.98321 1.92724 1.81015 1.31299 0.86373 0.92488 0.93982 0.89498 0.90439 0.90309 0.84802 0.86430 0.87572 0.93457 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.13 113.37 1.26 1.82 16 2 O -0.34 -9.28 8.92 -92.75 -0.83 -10.10 16 3 C 0.08 2.42 5.69 22.52 0.13 2.55 16 4 C -0.09 -2.77 5.89 -19.77 -0.12 -2.89 16 5 C -0.10 -2.31 9.79 71.24 0.70 -1.61 16 6 C -0.11 -4.00 9.32 22.26 0.21 -3.79 16 7 C -0.08 -3.22 4.89 -19.85 -0.10 -3.32 16 8 C 0.26 12.63 2.85 43.42 0.12 12.75 16 9 H 0.02 1.20 8.00 -2.39 -0.02 1.18 16 10 N -0.82 -37.57 8.36 -174.94 -1.46 -39.03 16 11 C -0.54 -29.51 8.70 25.60 0.22 -29.28 16 12 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 13 C 0.04 2.19 5.39 84.65 0.46 2.65 16 14 N -0.88 -50.48 12.77 21.45 0.27 -50.20 16 15 Si 0.94 43.60 29.54 68.60 2.03 45.62 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 C -0.11 -4.28 9.07 22.28 0.20 -4.07 16 20 C -0.06 -1.88 6.33 22.41 0.14 -1.73 16 21 Cl -0.06 -1.88 28.50 -2.72 -0.08 -1.95 16 22 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.08 1.64 7.53 -2.39 -0.02 1.62 16 27 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 28 H 0.13 4.52 8.03 -2.91 -0.02 4.50 16 29 H 0.32 14.18 7.33 -89.69 -0.66 13.52 16 30 H 0.31 12.72 9.06 -89.70 -0.81 11.91 16 31 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.13 4.80 6.65 -2.91 -0.02 4.78 16 Total: -1.00 -61.34 291.77 2.84 -58.50 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -0.32 Total: 24.10 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 3.23 Total: -26.93 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -1.19 Total: -89.23 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.83 Total: -10.10 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.95 kcal Total: -61.34 2.84 -58.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379992.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.130 kcal (2) G-P(sol) polarization free energy of solvation -61.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds