Wall clock time and date at job start Mon Mar 30 2020 06:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35932 * 117.00218 * 2 1 4 4 C 1.38706 * 120.05547 * 359.97438 * 3 2 1 5 5 C 1.38151 * 119.95893 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.07112 * 359.97438 * 5 4 3 7 7 C 1.38248 * 120.12073 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.97526 * 179.97438 * 7 6 5 9 9 H 1.09005 * 109.46702 * 144.99960 * 8 7 6 10 10 N 1.46899 * 109.47038 * 24.99813 * 8 7 6 11 11 C 1.52995 * 109.47049 * 264.99740 * 8 7 6 12 12 C 1.50703 * 109.47067 * 185.00454 * 11 8 7 13 13 H 1.07997 * 120.00099 * 359.97438 * 12 11 8 14 14 C 1.37871 * 119.99948 * 180.02562 * 12 11 8 15 15 N 1.31519 * 120.00110 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00117 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47696 * 89.99511 * 16 14 12 18 18 H 1.48501 * 109.47314 * 209.99864 * 16 14 12 19 19 H 1.48501 * 109.47035 * 329.99612 * 16 14 12 20 20 C 1.38254 * 120.04203 * 0.26936 * 7 6 5 21 21 Cl 1.73604 * 120.03783 * 179.74771 * 20 7 6 22 22 H 1.09004 * 109.47104 * 60.00263 * 1 2 3 23 23 H 1.09005 * 109.46971 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46731 * 300.00136 * 1 2 3 25 25 H 1.08007 * 120.02049 * 0.02562 * 4 3 2 26 26 H 1.07990 * 119.96600 * 179.97438 * 5 4 3 27 27 H 1.08006 * 119.93943 * 179.97438 * 6 5 4 28 28 H 1.00889 * 111.00263 * 299.99619 * 10 8 7 29 29 H 1.00902 * 110.99936 * 63.95735 * 10 8 7 30 30 H 1.09000 * 109.47136 * 305.00126 * 11 8 7 31 31 H 1.08997 * 109.47222 * 65.00356 * 11 8 7 32 32 H 0.97003 * 119.99667 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2919 2.3752 -0.0005 5 6 1.9212 3.6050 -0.0011 6 6 3.3022 3.6767 -0.0005 7 6 4.0570 2.5185 0.0011 8 6 5.5618 2.6005 0.0011 9 1 5.9703 1.7804 0.5917 10 7 5.9824 3.8813 0.5847 11 6 6.0780 2.5007 -1.4357 12 6 7.5844 2.4590 -1.4266 13 1 8.1200 2.5000 -0.4897 14 6 8.2788 2.3695 -2.6143 15 7 7.6265 2.3201 -3.7553 16 14 10.1460 2.3170 -2.6029 17 1 10.6012 0.9061 -2.5178 18 1 10.6661 2.9304 -3.8513 19 1 10.6553 3.0729 -1.4306 20 6 3.4322 1.2852 -0.0035 21 17 4.3803 -0.1691 -0.0081 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 0.2132 2.3201 -0.0005 26 1 1.3341 4.5114 -0.0019 27 1 3.7919 4.6394 -0.0014 28 1 5.6162 4.6578 0.0547 29 1 5.7092 3.9441 1.5539 30 1 5.6922 1.5922 -1.8981 31 1 5.7420 3.3683 -2.0036 32 1 8.1151 2.2567 -4.5909 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260388761.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:15 Heat of formation + Delta-G solvation = -22.258731 kcal Electronic energy + Delta-G solvation = -16616.411102 eV Core-core repulsion = 13796.011327 eV Total energy + Delta-G solvation = -2820.399775 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.14990 -37.99018 -35.92507 -35.00590 -32.38079 -30.58169 -29.39160 -28.30460 -27.28704 -24.36625 -22.40358 -21.97151 -19.81489 -17.74234 -16.46674 -16.27599 -16.05719 -15.79804 -15.03933 -14.40751 -14.27367 -13.99445 -13.64755 -13.14764 -12.82527 -12.22867 -12.02796 -11.65227 -11.34002 -11.23607 -11.12418 -10.98248 -10.77589 -10.50025 -10.27362 -10.11522 -9.59071 -9.01919 -8.32341 -8.23488 -8.07816 -7.97679 -5.85373 -3.83669 1.34138 1.47188 2.61192 3.21887 3.42706 3.48322 3.53673 3.77780 4.59344 4.78866 4.89334 5.02923 5.05639 5.24582 5.26549 5.36143 5.43582 5.53028 5.62163 5.87101 6.16172 6.23230 6.41459 6.57411 6.70956 6.92432 7.31752 7.60335 7.73811 8.00271 8.13117 8.17952 8.57678 9.21813 9.77648 11.26543 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.029662 B = 0.006074 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.746303 B = 4608.348909 C = 5032.309330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.134 3.866 4 C -0.215 4.215 5 C -0.075 4.075 6 C -0.154 4.154 7 C -0.052 4.052 8 C 0.128 3.872 9 H 0.089 0.911 10 N -0.819 5.819 11 C 0.040 3.960 12 C -0.490 4.490 13 H 0.062 0.938 14 C 0.051 3.949 15 N -0.902 5.902 16 Si 0.891 3.109 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.274 1.274 20 C -0.064 4.064 21 Cl -0.047 7.047 22 H 0.055 0.945 23 H 0.099 0.901 24 H 0.053 0.947 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.335 0.665 29 H 0.323 0.677 30 H 0.027 0.973 31 H 0.015 0.985 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.381 -0.354 8.756 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.220 6.220 3 C 0.088 3.912 4 C -0.234 4.234 5 C -0.093 4.093 6 C -0.173 4.173 7 C -0.055 4.055 8 C 0.016 3.984 9 H 0.107 0.893 10 N -0.347 5.347 11 C 0.002 3.998 12 C -0.529 4.529 13 H 0.081 0.919 14 C -0.149 4.149 15 N -0.543 5.543 16 Si 0.720 3.280 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.198 1.198 20 C -0.092 4.092 21 Cl -0.018 7.018 22 H 0.073 0.927 23 H 0.117 0.883 24 H 0.072 0.928 25 H 0.148 0.852 26 H 0.144 0.856 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.134 0.866 30 H 0.045 0.955 31 H 0.033 0.967 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.410 -0.924 8.403 16.706 hybrid contribution -0.365 0.179 -0.088 0.416 sum -14.775 -0.745 8.315 16.970 Atomic orbital electron populations 1.23049 0.78623 1.03855 1.01198 1.86164 1.21077 1.26234 1.88531 1.18703 0.90552 0.84900 0.97061 1.21036 0.99661 0.91850 1.10888 1.20914 0.94515 0.96892 0.97015 1.20877 0.93502 0.98009 1.04865 1.21258 1.00470 0.90366 0.93395 1.20978 0.83636 0.92328 1.01432 0.89262 1.58832 1.67106 1.03674 1.05053 1.19117 0.96427 0.97527 0.86680 1.21117 0.90965 1.48213 0.92591 0.91945 1.25001 0.98158 0.95992 0.95712 1.69979 1.35145 1.51858 0.97326 0.86601 0.86247 0.77957 0.77222 1.20957 1.21570 1.19845 1.20052 0.88349 0.89222 1.11547 1.98367 1.71541 1.35093 1.96840 0.92656 0.88264 0.92791 0.85213 0.85635 0.85346 0.85125 0.86569 0.95482 0.96691 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.44 9.96 -19.52 -0.19 -4.63 16 3 C 0.13 2.11 6.68 -39.20 -0.26 1.85 16 4 C -0.22 -2.83 9.04 -39.44 -0.36 -3.19 16 5 C -0.08 -0.98 10.04 -39.60 -0.40 -1.38 16 6 C -0.15 -2.35 9.27 -39.56 -0.37 -2.71 16 7 C -0.05 -0.94 5.05 -104.61 -0.53 -1.47 16 8 C 0.13 2.65 2.43 -68.86 -0.17 2.48 16 9 H 0.09 1.93 7.14 -51.93 -0.37 1.56 16 10 N -0.82 -15.02 8.54 -5.65 -0.05 -15.06 16 11 C 0.04 1.03 4.60 -27.88 -0.13 0.90 16 12 C -0.49 -13.99 8.84 -34.44 -0.30 -14.29 16 13 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 14 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 15 N -0.90 -27.65 13.29 55.43 0.74 -26.92 16 16 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 17 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 19 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.06 -1.16 6.33 -39.37 -0.25 -1.41 16 21 Cl -0.05 -0.90 26.72 -51.86 -1.39 -2.28 16 22 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 23 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 25 H 0.13 1.29 6.30 -52.48 -0.33 0.96 16 26 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 27 H 0.13 1.76 6.28 -52.48 -0.33 1.43 16 28 H 0.33 5.74 7.21 -39.30 -0.28 5.46 16 29 H 0.32 4.94 9.06 -39.29 -0.36 4.59 16 30 H 0.03 0.76 7.91 -51.93 -0.41 0.35 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 286.52 15.07 4.32 4.32 Total: -1.00 -32.44 286.52 -7.15 -39.58 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.69 Total: 4.20 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -1.87 Total: -16.57 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.69 Total: -41.98 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.19 Total: -4.63 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.39 Total: -2.28 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.44 -7.15 -39.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388761.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.323 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds