Wall clock time and date at job start Mon Mar 30 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35923 * 116.99815 * 2 1 4 4 C 1.38705 * 120.05918 * 359.97438 * 3 2 1 5 5 C 1.38153 * 119.95596 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.07623 * 359.72358 * 5 4 3 7 7 C 1.38247 * 120.11615 * 0.54890 * 6 5 4 8 8 C 1.50703 * 119.97689 * 179.72779 * 7 6 5 9 9 H 1.09002 * 109.47152 * 219.72321 * 8 7 6 10 10 N 1.46899 * 109.47107 * 339.72234 * 8 7 6 11 11 C 1.53002 * 109.46966 * 99.72461 * 8 7 6 12 12 C 1.50703 * 109.46970 * 175.00182 * 11 8 7 13 13 H 1.08002 * 119.99817 * 359.97438 * 12 11 8 14 14 C 1.37870 * 120.00164 * 179.97438 * 12 11 8 15 15 N 1.31515 * 120.00042 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00234 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47112 * 89.99855 * 16 14 12 18 18 H 1.48503 * 109.47291 * 209.99893 * 16 14 12 19 19 H 1.48501 * 109.47274 * 330.00084 * 16 14 12 20 20 C 1.38250 * 120.04422 * 359.44880 * 7 6 5 21 21 Cl 1.73606 * 120.04239 * 180.29654 * 20 7 6 22 22 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47441 * 299.99820 * 1 2 3 24 24 H 1.09000 * 109.46707 * 60.00670 * 1 2 3 25 25 H 1.07994 * 120.02238 * 0.03444 * 4 3 2 26 26 H 1.08001 * 119.96293 * 179.97438 * 5 4 3 27 27 H 1.08001 * 119.94105 * 180.27126 * 6 5 4 28 28 H 1.00903 * 110.99833 * 59.99796 * 10 8 7 29 29 H 1.00901 * 111.00152 * 183.95033 * 10 8 7 30 30 H 1.09000 * 109.47059 * 294.99880 * 11 8 7 31 31 H 1.08996 * 109.47073 * 54.99973 * 11 8 7 32 32 H 0.97001 * 120.00168 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3751 -0.0005 5 6 1.9212 3.6050 -0.0011 6 6 3.3021 3.6767 0.0047 7 6 4.0570 2.5185 -0.0004 8 6 5.5618 2.6005 -0.0003 9 1 5.9674 1.8338 -0.6605 10 7 5.9800 3.9264 -0.4746 11 6 6.0844 2.3787 1.4205 12 6 7.5908 2.3383 1.4009 13 1 8.1221 2.4583 0.4683 14 6 8.2906 2.1481 2.5735 15 7 7.6436 2.0025 3.7092 16 14 10.1577 2.0973 2.5492 17 1 10.6928 3.4689 2.7433 18 1 10.6433 1.2173 3.6423 19 1 10.6215 1.5654 1.2425 20 6 3.4323 1.2852 0.0002 21 17 4.3802 -0.1692 0.0015 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 0.2133 2.3201 -0.0004 26 1 1.3340 4.5114 -0.0019 27 1 3.7919 4.6393 0.0087 28 1 5.6163 4.6549 0.1213 29 1 6.9849 3.9849 -0.5450 30 1 5.7512 3.1947 2.0617 31 1 5.7006 1.4341 1.8055 32 1 8.1360 1.8691 4.5342 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260388762.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:17 Heat of formation + Delta-G solvation = -47.528412 kcal Electronic energy + Delta-G solvation = -16633.251747 eV Core-core repulsion = 13811.756197 eV Total energy + Delta-G solvation = -2821.495550 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20213 -39.11817 -37.24051 -36.65152 -34.47116 -31.72026 -30.71963 -29.91354 -28.15806 -26.25348 -23.72146 -23.40705 -21.27437 -19.07419 -18.38973 -17.54224 -17.33884 -16.73637 -16.57297 -16.25066 -15.31879 -14.96823 -14.71201 -14.39553 -14.20163 -14.02624 -13.79942 -13.14067 -12.89839 -12.70706 -12.51827 -12.49195 -12.20738 -12.07873 -11.91279 -11.74312 -11.65454 -11.08267 -10.58611 -9.78607 -9.31789 -9.12326 -8.19670 -6.30810 0.22043 0.40267 1.34036 1.39337 1.40743 1.51365 2.29803 2.39841 2.69799 3.13852 3.70285 3.96409 3.99137 4.20266 4.31100 4.42689 4.43660 4.45873 4.64877 4.75876 4.81458 4.92510 5.14780 5.36600 5.40426 5.52284 5.61455 5.75999 5.78604 6.17667 6.36546 6.38302 6.71208 6.84758 7.38230 8.91733 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.029726 B = 0.006144 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.716997 B = 4556.289534 C = 5017.481956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.125 3.875 4 C -0.203 4.203 5 C -0.068 4.068 6 C -0.145 4.145 7 C -0.036 4.036 8 C 0.137 3.863 9 H 0.070 0.930 10 N -0.825 5.825 11 C 0.014 3.986 12 C -0.532 4.532 13 H 0.064 0.936 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.961 3.039 17 H -0.270 1.270 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.097 4.097 21 Cl -0.075 7.075 22 H 0.117 0.883 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.169 0.831 26 H 0.168 0.832 27 H 0.144 0.856 28 H 0.337 0.663 29 H 0.347 0.653 30 H -0.010 1.010 31 H -0.001 1.001 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.068 1.588 -8.047 17.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.079 3.921 4 C -0.222 4.222 5 C -0.086 4.086 6 C -0.164 4.164 7 C -0.038 4.038 8 C 0.025 3.975 9 H 0.088 0.912 10 N -0.355 5.355 11 C -0.025 4.025 12 C -0.570 4.570 13 H 0.082 0.918 14 C -0.194 4.194 15 N -0.571 5.571 16 Si 0.786 3.214 17 H -0.195 1.195 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.124 4.124 21 Cl -0.046 7.046 22 H 0.135 0.865 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.187 0.813 26 H 0.186 0.814 27 H 0.162 0.838 28 H 0.150 0.850 29 H 0.160 0.840 30 H 0.008 0.992 31 H 0.017 0.983 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.289 1.049 -8.548 17.548 hybrid contribution 1.557 -0.357 1.419 2.136 sum -13.732 0.692 -7.129 15.488 Atomic orbital electron populations 1.23418 0.75905 1.05712 1.02692 1.86132 1.23917 1.25969 1.88434 1.18776 0.89749 0.86395 0.97224 1.21501 1.01414 0.90722 1.08558 1.21427 0.93733 0.98538 0.94906 1.21114 0.94380 0.97684 1.03194 1.19848 0.96412 0.91545 0.95967 1.20202 0.88907 0.92498 0.95859 0.91192 1.59270 1.17446 1.03069 1.55674 1.19600 0.95342 0.95552 0.91957 1.21506 0.92399 1.49313 0.93754 0.91834 1.25894 1.03461 0.94804 0.95221 1.70115 1.37451 1.50475 0.99080 0.85499 0.79707 0.78252 0.77896 1.19519 1.21348 1.18887 1.20279 0.89715 0.88142 1.14310 1.98335 1.72458 1.36684 1.97125 0.86464 0.91376 0.90869 0.81324 0.81418 0.83833 0.84979 0.83969 0.99216 0.98302 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -9.52 9.96 -92.69 -0.92 -10.44 16 3 C 0.12 3.94 6.68 22.52 0.15 4.10 16 4 C -0.20 -4.89 9.04 22.36 0.20 -4.69 16 5 C -0.07 -1.63 10.04 22.26 0.22 -1.41 16 6 C -0.15 -4.50 9.25 22.28 0.21 -4.30 16 7 C -0.04 -1.40 5.09 -19.86 -0.10 -1.50 16 8 C 0.14 5.89 2.44 44.17 0.11 6.00 16 9 H 0.07 3.21 7.35 -2.39 -0.02 3.19 16 10 N -0.83 -30.52 8.68 -171.79 -1.49 -32.01 16 11 C 0.01 0.74 4.54 29.85 0.14 0.88 16 12 C -0.53 -29.51 8.55 25.60 0.22 -29.30 16 13 H 0.06 3.36 7.15 -2.91 -0.02 3.34 16 14 C 0.00 0.24 5.46 84.65 0.46 0.71 16 15 N -0.93 -56.90 13.29 21.44 0.28 -56.61 16 16 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 C -0.10 -3.72 6.32 22.41 0.14 -3.58 16 21 Cl -0.07 -3.07 26.19 -2.72 -0.07 -3.14 16 22 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 23 H 0.07 0.93 7.66 -2.39 -0.02 0.92 16 24 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 25 H 0.17 2.64 6.30 -2.91 -0.02 2.62 16 26 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 27 H 0.14 4.04 6.24 -2.91 -0.02 4.02 16 28 H 0.34 11.56 7.28 -89.69 -0.65 10.90 16 29 H 0.35 13.05 7.90 -89.69 -0.71 12.34 16 30 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.00 -0.08 7.29 -2.39 -0.02 -0.10 16 32 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -68.94 283.68 2.48 -66.46 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -0.20 Total: 21.13 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 2.86 Total: -31.70 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -1.21 Total: -88.62 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.92 Total: -10.44 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -3.07 SS G_CDS: -0.07 Total: -3.14 kcal Total: -68.94 2.48 -66.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388762.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.928 kcal (2) G-P(sol) polarization free energy of solvation -68.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds