Wall clock time and date at job start Mon Mar 30 2020 06:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 117.00099 * 2 1 4 4 C 1.38735 * 120.04712 * 0.02562 * 3 2 1 5 5 C 1.38231 * 119.93413 * 180.02562 * 4 3 2 6 6 Cl 1.73596 * 119.98774 * 180.02562 * 5 4 3 7 7 C 1.38409 * 120.02624 * 0.02562 * 5 4 3 8 8 C 1.38227 * 120.10036 * 359.95643 * 7 5 4 9 9 C 1.50705 * 119.96530 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.46700 * 200.02045 * 9 8 7 11 11 N 1.46899 * 109.46892 * 320.02074 * 9 8 7 12 12 C 1.52995 * 109.46906 * 80.01943 * 9 8 7 13 13 C 1.50700 * 109.46778 * 174.99907 * 12 9 8 14 14 H 1.07994 * 120.00410 * 359.97438 * 13 12 9 15 15 C 1.37885 * 119.99966 * 180.02562 * 13 12 9 16 16 N 1.31515 * 119.99816 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99906 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46928 * 90.00140 * 17 15 13 19 19 H 1.48497 * 109.47015 * 209.99856 * 17 15 13 20 20 H 1.48500 * 109.47106 * 330.00121 * 17 15 13 21 21 C 1.38172 * 120.06671 * 0.04130 * 8 7 5 22 22 H 1.08993 * 109.47474 * 59.99823 * 1 2 3 23 23 H 1.08998 * 109.46938 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46954 * 299.99212 * 1 2 3 25 25 H 1.08007 * 120.03167 * 359.74948 * 4 3 2 26 26 H 1.08002 * 119.95275 * 179.97438 * 7 5 4 27 27 H 1.00901 * 111.00077 * 296.04088 * 11 9 8 28 28 H 1.00891 * 111.00292 * 60.00041 * 11 9 8 29 29 H 1.09001 * 109.47381 * 295.00001 * 12 9 8 30 30 H 1.08996 * 109.47324 * 55.00054 * 12 9 8 31 31 H 0.97005 * 119.99672 * 180.02562 * 16 15 13 32 32 H 1.07995 * 120.01236 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3750 0.0005 5 6 1.9214 3.6054 0.0000 6 17 0.9785 5.0630 0.0013 7 6 3.3037 3.6758 -0.0016 8 6 4.0568 2.5167 -0.0018 9 6 5.5617 2.5968 -0.0029 10 1 5.9755 1.6517 -0.3548 11 7 5.9935 3.6823 -0.8935 12 6 6.0587 2.8740 1.4172 13 6 7.5650 2.8324 1.4393 14 1 8.1129 2.6281 0.5314 15 6 8.2436 3.0540 2.6190 16 7 9.5581 3.0181 2.6381 17 14 7.2958 3.4065 4.1896 18 1 7.0021 2.1292 4.8878 19 1 8.1101 4.2782 5.0741 20 1 6.0217 4.0924 3.8556 21 6 3.4312 1.2847 -0.0012 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 0.2127 2.3200 -0.0031 26 1 3.7947 4.6377 -0.0024 27 1 5.7332 3.4909 -1.8494 28 1 5.6226 4.5695 -0.5884 29 1 5.7177 3.8591 1.7357 30 1 5.6643 2.1166 2.0946 31 1 10.0354 3.1737 3.4681 32 1 4.0204 0.3796 -0.0017 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260402527.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:22 Heat of formation + Delta-G solvation = -46.217317 kcal Electronic energy + Delta-G solvation = -16376.651395 eV Core-core repulsion = 13555.212698 eV Total energy + Delta-G solvation = -2821.438697 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.34787 -39.23560 -37.78156 -36.32486 -34.45641 -31.87118 -30.87262 -30.66942 -28.26883 -26.08558 -23.71634 -23.37004 -21.29003 -19.23156 -18.50929 -17.62237 -17.30597 -16.76017 -16.60885 -16.17723 -15.86137 -15.29862 -14.91873 -14.70970 -14.38488 -14.33639 -13.38437 -13.24826 -13.14715 -12.85958 -12.76074 -12.38019 -12.18914 -12.12110 -12.02670 -11.68853 -11.45764 -11.27385 -10.69586 -9.84987 -9.48891 -9.28333 -8.18720 -6.18605 0.03753 0.22275 0.98753 1.36883 1.38602 1.49203 2.25212 2.40820 2.50114 3.15265 3.60672 3.85812 3.88616 4.00616 4.16795 4.29846 4.30255 4.37610 4.46213 4.64119 4.73416 4.81945 5.01463 5.08460 5.18916 5.29457 5.46183 5.58929 5.71631 6.29434 6.35178 6.49934 6.78288 6.90605 7.42443 8.98389 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.005901 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.949633 B = 4743.508735 C = 5150.398233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.141 3.859 4 C -0.205 4.205 5 C 0.004 3.996 6 Cl -0.060 7.060 7 C -0.154 4.154 8 C -0.060 4.060 9 C 0.153 3.847 10 H 0.078 0.922 11 N -0.830 5.830 12 C 0.003 3.997 13 C -0.495 4.495 14 H 0.041 0.959 15 C 0.002 3.998 16 N -0.954 5.954 17 Si 0.939 3.061 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.251 1.251 21 C -0.154 4.154 22 H 0.068 0.932 23 H 0.123 0.877 24 H 0.065 0.935 25 H 0.161 0.839 26 H 0.135 0.865 27 H 0.344 0.656 28 H 0.341 0.659 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.262 0.738 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.360 -1.604 -6.087 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.095 3.905 4 C -0.224 4.224 5 C -0.023 4.023 6 Cl -0.031 7.031 7 C -0.173 4.173 8 C -0.063 4.063 9 C 0.041 3.959 10 H 0.096 0.904 11 N -0.360 5.360 12 C -0.034 4.034 13 C -0.533 4.533 14 H 0.059 0.941 15 C -0.194 4.194 16 N -0.596 5.596 17 Si 0.764 3.236 18 H -0.195 1.195 19 H -0.213 1.213 20 H -0.175 1.175 21 C -0.174 4.174 22 H 0.087 0.913 23 H 0.141 0.859 24 H 0.084 0.916 25 H 0.179 0.821 26 H 0.152 0.848 27 H 0.157 0.843 28 H 0.155 0.845 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.476 -1.825 -5.761 23.274 hybrid contribution -1.012 0.538 0.617 1.302 sum -23.488 -1.287 -5.145 24.079 Atomic orbital electron populations 1.23434 0.76057 1.05980 1.02493 1.86105 1.23815 1.25818 1.88346 1.18834 0.91741 0.84574 0.95329 1.21201 1.01581 0.89878 1.09779 1.20620 0.91441 0.87805 1.02395 1.98365 1.72260 1.35663 1.96780 1.20834 0.91879 0.99279 1.05354 1.20839 0.97874 0.92203 0.95403 1.20233 0.85537 0.95638 0.94542 0.90370 1.58702 1.67513 1.04407 1.05331 1.19528 0.94774 0.96346 0.92771 1.21256 0.91268 1.45753 0.95046 0.94053 1.25887 0.95520 0.95494 1.02483 1.70068 1.08429 1.53019 1.28133 0.85823 0.79442 0.78799 0.79532 1.19542 1.21296 1.17476 1.20569 0.92075 0.98593 1.06146 0.91293 0.85899 0.91624 0.82150 0.84753 0.84318 0.84460 0.96371 0.96368 0.92891 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.43 10.50 -92.44 -0.97 -8.40 16 3 C 0.14 3.62 6.69 22.50 0.15 3.77 16 4 C -0.21 -4.66 8.82 22.39 0.20 -4.47 16 5 C 0.00 0.11 6.32 22.31 0.14 0.25 16 6 Cl -0.06 -1.31 28.95 -2.72 -0.08 -1.39 16 7 C -0.15 -4.40 9.08 22.31 0.20 -4.20 16 8 C -0.06 -1.90 4.94 -19.88 -0.10 -2.00 16 9 C 0.15 5.75 2.93 44.17 0.13 5.88 16 10 H 0.08 3.08 8.00 -2.39 -0.02 3.06 16 11 N -0.83 -29.16 8.77 -171.80 -1.51 -30.67 16 12 C 0.00 0.16 3.67 29.85 0.11 0.27 16 13 C -0.49 -28.47 9.39 25.60 0.24 -28.23 16 14 H 0.04 2.65 7.99 -2.91 -0.02 2.63 16 15 C 0.00 0.10 5.47 84.66 0.46 0.56 16 16 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 17 Si 0.94 45.19 27.47 68.60 1.88 47.07 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 21 C -0.15 -4.55 9.61 22.37 0.21 -4.34 16 22 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 23 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.07 0.73 7.66 -2.38 -0.02 0.71 16 25 H 0.16 2.70 6.30 -2.91 -0.02 2.68 16 26 H 0.13 3.71 6.66 -2.91 -0.02 3.69 16 27 H 0.34 10.00 9.06 -89.69 -0.81 9.19 16 28 H 0.34 11.10 7.34 -89.70 -0.66 10.45 16 29 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 30 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 31 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 32 H 0.14 3.95 8.03 -2.91 -0.02 3.93 16 Total: -1.00 -68.14 287.05 2.12 -66.02 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.37 Total: 19.18 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 2.86 Total: -31.21 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -1.21 Total: -91.28 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.97 Total: -8.40 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -68.14 2.12 -66.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260402527.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.801 kcal (2) G-P(sol) polarization free energy of solvation -68.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds