Wall clock time and date at job start Mon Mar 30 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35918 * 117.00438 * 2 1 4 4 C 1.38711 * 120.05928 * 0.02562 * 3 2 1 5 5 C 1.38149 * 119.95825 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.96110 * 180.02562 * 5 4 3 7 7 C 1.38273 * 120.07611 * 0.02562 * 5 4 3 8 8 C 1.38243 * 120.12014 * 359.97438 * 7 5 4 9 9 C 1.50707 * 119.97898 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.47204 * 145.01892 * 9 8 7 11 11 N 1.46899 * 109.46948 * 25.02178 * 9 8 7 12 12 C 1.50698 * 109.46679 * 265.02254 * 9 8 7 13 13 H 1.07995 * 120.00756 * 5.42463 * 12 9 8 14 14 C 1.37887 * 119.99730 * 185.42427 * 12 9 8 15 15 N 1.31516 * 119.99792 * 9.55687 * 14 12 9 16 16 Si 1.86792 * 120.00041 * 189.56174 * 14 12 9 17 17 H 1.48494 * 109.47327 * 84.98894 * 16 14 12 18 18 H 1.48502 * 109.47068 * 204.99381 * 16 14 12 19 19 H 1.48502 * 109.47125 * 324.98904 * 16 14 12 20 20 C 1.38258 * 120.04437 * 359.97438 * 8 7 5 21 21 Cl 1.73592 * 120.03894 * 180.02562 * 20 8 7 22 22 H 1.08998 * 109.47644 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47027 * 299.99833 * 1 2 3 24 24 H 1.08996 * 109.47153 * 59.99427 * 1 2 3 25 25 H 1.08005 * 120.01724 * 359.74843 * 4 3 2 26 26 H 1.09002 * 109.47091 * 90.00003 * 6 5 4 27 27 H 1.09002 * 109.47148 * 210.00424 * 6 5 4 28 28 H 1.09007 * 109.46754 * 329.99757 * 6 5 4 29 29 H 1.08006 * 119.93892 * 179.97438 * 7 5 4 30 30 H 1.00900 * 110.99682 * 173.32839 * 11 9 8 31 31 H 1.00900 * 110.99716 * 297.27631 * 11 9 8 32 32 H 0.96996 * 119.99553 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2920 2.3752 0.0005 5 6 1.9214 3.6049 0.0000 6 6 1.1021 4.8698 0.0012 7 6 3.3023 3.6766 -0.0016 8 6 4.0570 2.5184 -0.0021 9 6 5.5619 2.6002 -0.0045 10 1 5.9713 1.7795 0.5845 11 7 5.9836 3.8802 0.5800 12 6 6.0679 2.5036 -1.4207 13 1 5.3690 2.4822 -2.2437 14 6 7.4235 2.4425 -1.6657 15 7 8.2652 2.2791 -0.6686 16 14 8.0642 2.5920 -3.4140 17 1 8.2091 4.0271 -3.7671 18 1 9.3851 1.9212 -3.5161 19 1 7.1077 1.9464 -4.3486 20 6 3.4323 1.2850 -0.0005 21 17 4.3802 -0.1693 -0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 0.2133 2.3202 -0.0032 26 1 0.9058 5.1746 1.0291 27 1 1.6509 5.6587 -0.5133 28 1 0.1570 4.6909 -0.5117 29 1 3.7921 4.6392 -0.0024 30 1 6.9860 3.9147 0.6899 31 1 5.6536 4.6566 0.0265 32 1 9.2188 2.2365 -0.8410 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416896.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:24 Heat of formation + Delta-G solvation = -48.241881 kcal Electronic energy + Delta-G solvation = -16845.377401 eV Core-core repulsion = 14023.850913 eV Total energy + Delta-G solvation = -2821.526489 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.15429 -38.92808 -37.15733 -36.42991 -33.77775 -32.74833 -30.47263 -28.64094 -28.15707 -27.03981 -24.70417 -22.56908 -21.21763 -18.64552 -18.44333 -17.52775 -17.23324 -16.67194 -16.64623 -15.85717 -15.05659 -14.84082 -14.42206 -14.40044 -14.05657 -13.73610 -13.40500 -13.23463 -13.02697 -12.81983 -12.63661 -12.40759 -12.24601 -12.09880 -12.05638 -11.77793 -11.47519 -11.13355 -10.62017 -9.49719 -9.18124 -8.97215 -8.12546 -6.31234 0.33260 0.52644 1.36411 1.38697 1.47493 1.51267 2.35057 2.38838 2.79226 3.08481 3.87609 3.97416 4.23005 4.36472 4.41271 4.44603 4.45234 4.74670 4.75130 4.84471 4.90246 4.93546 5.15218 5.26052 5.34439 5.64008 5.68250 5.79230 5.94182 6.07369 6.44681 6.69233 6.81342 7.08743 7.39012 8.86228 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.007780 C = 0.006638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.892824 B = 3598.309390 C = 4217.014641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.129 3.871 4 C -0.214 4.214 5 C -0.045 4.045 6 C -0.107 4.107 7 C -0.152 4.152 8 C -0.011 4.011 9 C 0.243 3.757 10 H 0.031 0.969 11 N -0.838 5.838 12 C -0.544 4.544 13 H 0.040 0.960 14 C 0.030 3.970 15 N -0.911 5.911 16 Si 0.949 3.051 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.278 1.278 20 C -0.105 4.105 21 Cl -0.078 7.078 22 H 0.118 0.882 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.166 0.834 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.338 0.662 31 H 0.323 0.677 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.289 1.966 0.957 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.083 3.917 4 C -0.233 4.233 5 C -0.045 4.045 6 C -0.163 4.163 7 C -0.170 4.170 8 C -0.013 4.013 9 C 0.133 3.867 10 H 0.048 0.952 11 N -0.365 5.365 12 C -0.584 4.584 13 H 0.059 0.941 14 C -0.171 4.171 15 N -0.550 5.550 16 Si 0.775 3.225 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.203 1.203 20 C -0.133 4.133 21 Cl -0.049 7.049 22 H 0.136 0.864 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.183 0.817 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.134 0.866 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.385 1.392 1.654 16.527 hybrid contribution 1.437 -0.269 -1.758 2.287 sum -14.947 1.123 -0.105 14.990 Atomic orbital electron populations 1.23391 0.76106 1.05609 1.02544 1.86118 1.23774 1.25970 1.88570 1.18708 0.89661 0.86131 0.97182 1.21203 1.00875 0.90148 1.11059 1.20173 0.93251 0.96329 0.94771 1.20844 0.99240 0.92607 1.03620 1.20875 0.93369 0.97674 1.05121 1.20101 0.97648 0.91058 0.92449 1.17785 0.85833 0.90125 0.92935 0.95153 1.59488 1.18346 1.04339 1.54344 1.21710 0.91762 1.51941 0.92970 0.94127 1.25611 0.97098 0.93981 1.00448 1.70011 1.03078 1.49315 1.32582 0.85716 0.77385 0.78572 0.80842 1.19393 1.20946 1.20271 1.20226 0.89323 0.88228 1.15478 1.98300 1.72879 1.36528 1.97239 0.86351 0.91199 0.91439 0.81674 0.89517 0.90817 0.89513 0.84895 0.85010 0.86584 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -10.56 9.96 -92.63 -0.92 -11.48 16 3 C 0.13 4.65 6.68 22.52 0.15 4.80 16 4 C -0.21 -6.17 8.69 22.36 0.19 -5.98 16 5 C -0.04 -1.33 5.88 -19.88 -0.12 -1.45 16 6 C -0.11 -2.10 10.01 71.24 0.71 -1.38 16 7 C -0.15 -5.72 8.92 22.28 0.20 -5.52 16 8 C -0.01 -0.50 5.00 -19.86 -0.10 -0.60 16 9 C 0.24 12.51 2.31 43.42 0.10 12.61 16 10 H 0.03 1.79 7.07 -2.39 -0.02 1.77 16 11 N -0.84 -39.50 8.73 -174.95 -1.53 -41.03 16 12 C -0.54 -29.94 8.63 25.60 0.22 -29.72 16 13 H 0.04 2.30 7.76 -2.91 -0.02 2.28 16 14 C 0.03 1.62 5.32 84.66 0.45 2.07 16 15 N -0.91 -51.66 12.32 21.45 0.26 -51.40 16 16 Si 0.95 43.76 29.55 68.60 2.03 45.78 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 C -0.10 -4.60 6.33 22.41 0.14 -4.46 16 21 Cl -0.08 -3.58 26.94 -2.72 -0.07 -3.65 16 22 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.07 1.08 7.67 -2.39 -0.02 1.06 16 24 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 25 H 0.17 3.32 6.30 -2.91 -0.02 3.30 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.40 8.08 -2.39 -0.02 1.38 16 28 H 0.09 1.30 8.08 -2.38 -0.02 1.28 16 29 H 0.13 4.77 6.35 -2.91 -0.02 4.76 16 30 H 0.34 16.99 7.96 -89.69 -0.71 16.28 16 31 H 0.32 13.99 7.33 -89.69 -0.66 13.33 16 32 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -64.90 285.27 2.62 -62.28 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -0.21 Total: 27.69 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 3.07 Total: -28.20 kcal Atomic # 7 Polarization: -91.16 SS G_CDS: -1.26 Total: -92.43 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.92 Total: -11.48 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 17 Polarization: -3.58 SS G_CDS: -0.07 Total: -3.65 kcal Total: -64.90 2.62 -62.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416896.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.038 kcal (2) G-P(sol) polarization free energy of solvation -64.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds