Wall clock time and date at job start Mon Mar 30 2020 07:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76201 * 102.99755 * 2 1 4 4 C 1.38964 * 120.05758 * 359.97438 * 3 2 1 5 5 C 1.38074 * 119.94776 * 180.02562 * 4 3 2 6 6 C 1.38502 * 120.05267 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.93932 * 180.02562 * 6 5 4 8 8 C 1.38452 * 120.11222 * 359.72767 * 6 5 4 9 9 C 1.38127 * 120.05391 * 0.54938 * 8 6 5 10 10 C 1.50700 * 120.02690 * 179.72474 * 9 8 6 11 11 H 1.09001 * 109.46699 * 144.72720 * 10 9 8 12 12 N 1.46901 * 109.47247 * 24.72772 * 10 9 8 13 13 C 1.53002 * 109.47081 * 264.72426 * 10 9 8 14 14 C 1.50696 * 109.46919 * 185.00082 * 13 10 9 15 15 H 1.07999 * 120.00202 * 359.97438 * 14 13 10 16 16 C 1.37884 * 119.99746 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99573 * 0.27650 * 16 14 13 18 18 Si 1.86800 * 119.99781 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47035 * 60.00183 * 18 16 14 20 20 H 1.48503 * 109.46845 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47237 * 299.99939 * 18 16 14 22 22 H 1.09002 * 109.47475 * 60.00136 * 1 2 3 23 23 H 1.09004 * 109.46942 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47208 * 299.99347 * 1 2 3 25 25 H 1.08005 * 120.02263 * 0.04327 * 4 3 2 26 26 H 1.07996 * 119.97071 * 180.02562 * 5 4 3 27 27 H 1.08001 * 119.97552 * 180.27539 * 8 6 5 28 28 H 1.00902 * 110.99903 * 176.04389 * 12 10 9 29 29 H 1.00904 * 110.99895 * 299.99718 * 12 10 9 30 30 H 1.09000 * 109.46497 * 65.00348 * 13 10 9 31 31 H 1.08999 * 109.46623 * 305.00412 * 13 10 9 32 32 H 0.97001 * 120.00651 * 359.71956 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1949 2.6656 -0.0005 5 6 1.5080 4.0103 -0.0011 6 6 2.8329 4.4140 -0.0005 7 9 3.1367 5.7304 -0.0005 8 6 3.8464 3.4708 0.0062 9 6 3.5383 2.1243 0.0010 10 6 4.6420 1.0982 0.0021 11 1 4.3346 0.2346 0.5918 12 7 5.8550 1.6844 0.5878 13 6 4.9307 0.6582 -1.4346 14 6 5.9465 -0.4549 -1.4244 15 1 6.3466 -0.8124 -0.4871 16 6 6.3660 -1.0162 -2.6119 17 7 5.8836 -0.5764 -3.7536 18 14 7.6257 -2.3955 -2.5994 19 1 7.0920 -3.5463 -1.8274 20 1 7.9058 -2.8227 -3.9938 21 1 8.8803 -1.9144 -1.9671 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8901 25 1 0.1616 2.3512 -0.0003 26 1 0.7192 4.7479 -0.0011 27 1 4.8787 3.7881 0.0111 28 1 6.5905 0.9973 0.6591 29 1 6.1604 2.4874 0.0587 30 1 5.3227 1.5027 -2.0013 31 1 4.0096 0.3054 -1.8984 32 1 5.2297 0.1400 -3.7602 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260516575.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:17 Heat of formation + Delta-G solvation = -35.583582 kcal Electronic energy + Delta-G solvation = -16524.819151 eV Core-core repulsion = 13718.258063 eV Total energy + Delta-G solvation = -2806.561088 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.71615 -39.12127 -35.63959 -32.73348 -30.81882 -30.18111 -28.82895 -27.63638 -24.51006 -22.67809 -22.38583 -20.15532 -17.73442 -17.05464 -16.72870 -16.34538 -15.41879 -14.87581 -14.72617 -14.31246 -13.86476 -13.76045 -13.73542 -13.24418 -12.88133 -12.77145 -12.61657 -12.07975 -11.98601 -11.56655 -11.01424 -10.83944 -10.69316 -10.40187 -10.11430 -9.87754 -9.32162 -8.85114 -8.59969 -8.38568 -7.93744 -7.08903 -6.41094 -4.11950 1.19160 1.38538 1.69509 2.60199 3.41200 3.42978 3.61276 3.66229 4.39095 4.50440 4.82692 4.88629 5.04978 5.07299 5.12121 5.36166 5.45403 5.58903 5.64915 5.85123 5.88657 6.15548 6.21777 6.24848 6.50893 6.64765 6.98005 7.22264 7.29844 7.86020 8.00613 8.17527 8.38330 8.80902 9.60851 10.99132 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020906 B = 0.006880 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.020131 B = 4068.562987 C = 4920.917438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 S -0.072 6.072 3 C -0.100 4.100 4 C -0.108 4.108 5 C -0.150 4.150 6 C 0.089 3.911 7 F -0.144 7.144 8 C -0.126 4.126 9 C -0.008 4.008 10 C 0.130 3.870 11 H 0.090 0.910 12 N -0.838 5.838 13 C -0.011 4.011 14 C -0.603 4.603 15 H 0.050 0.950 16 C 0.019 3.981 17 N -0.908 5.908 18 Si 1.067 2.933 19 H -0.287 1.287 20 H -0.283 1.283 21 H -0.288 1.288 22 H 0.081 0.919 23 H 0.106 0.894 24 H 0.079 0.921 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.140 0.860 28 H 0.351 0.649 29 H 0.329 0.671 30 H 0.006 0.994 31 H 0.022 0.978 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.866 5.447 7.814 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 S 0.171 5.829 3 C -0.214 4.214 4 C -0.132 4.132 5 C -0.171 4.171 6 C 0.067 3.933 7 F -0.123 7.123 8 C -0.147 4.147 9 C -0.014 4.014 10 C 0.018 3.982 11 H 0.107 0.893 12 N -0.368 5.368 13 C -0.049 4.049 14 C -0.641 4.641 15 H 0.069 0.931 16 C -0.186 4.186 17 N -0.544 5.544 18 Si 0.896 3.104 19 H -0.214 1.214 20 H -0.208 1.208 21 H -0.214 1.214 22 H 0.100 0.900 23 H 0.124 0.876 24 H 0.098 0.902 25 H 0.147 0.853 26 H 0.150 0.850 27 H 0.158 0.842 28 H 0.165 0.835 29 H 0.141 0.859 30 H 0.024 0.976 31 H 0.040 0.960 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.814 3.500 7.486 12.082 hybrid contribution -1.311 2.246 0.010 2.600 sum -10.125 5.745 7.496 13.846 Atomic orbital electron populations 1.23773 0.97386 1.06855 1.05088 1.86196 1.03383 1.01620 1.91687 1.21676 0.95875 0.97499 1.06316 1.20882 0.98260 0.91976 1.02110 1.20844 0.94738 0.96451 1.05032 1.17657 0.93685 0.77567 1.04389 1.91467 1.94053 1.32613 1.94132 1.20891 0.99378 0.91842 1.02555 1.19738 0.92882 0.94145 0.94666 1.20449 0.87370 0.92637 0.97708 0.89253 1.59285 1.08620 1.12422 1.56463 1.19902 0.97638 0.96635 0.90743 1.21910 1.26477 1.20621 0.95113 0.93148 1.25812 0.99740 1.00805 0.92221 1.70774 1.28787 1.27547 1.27252 0.83561 0.75429 0.75471 0.75974 1.21362 1.20810 1.21441 0.90003 0.87564 0.90203 0.85271 0.85005 0.84212 0.83460 0.85943 0.97616 0.95980 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.15 101.05 0.92 -0.83 16 2 S -0.07 -1.18 20.50 -107.50 -2.20 -3.38 16 3 C -0.10 -1.70 6.11 -39.06 -0.24 -1.94 16 4 C -0.11 -1.53 9.36 -39.37 -0.37 -1.90 16 5 C -0.15 -2.09 10.02 -39.54 -0.40 -2.48 16 6 C 0.09 1.40 7.30 -39.41 -0.29 1.11 16 7 F -0.14 -2.23 17.26 2.25 0.04 -2.19 16 8 C -0.13 -2.17 9.24 -39.54 -0.37 -2.53 16 9 C -0.01 -0.15 5.08 -104.41 -0.53 -0.68 16 10 C 0.13 2.69 2.45 -68.86 -0.17 2.52 16 11 H 0.09 1.94 7.01 -51.93 -0.36 1.58 16 12 N -0.84 -15.83 8.79 -5.65 -0.05 -15.88 16 13 C -0.01 -0.26 3.91 -27.88 -0.11 -0.37 16 14 C -0.60 -16.37 8.55 -34.44 -0.29 -16.66 16 15 H 0.05 1.33 7.14 -52.49 -0.37 0.96 16 16 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 17 N -0.91 -27.43 13.65 55.43 0.76 -26.68 16 18 Si 1.07 24.83 29.90 -169.99 -5.08 19.75 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 22 H 0.08 0.82 7.75 -51.92 -0.40 0.42 16 23 H 0.11 0.98 8.14 -51.92 -0.42 0.56 16 24 H 0.08 0.74 7.75 -51.92 -0.40 0.33 16 25 H 0.13 1.44 5.88 -52.48 -0.31 1.13 16 26 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 27 H 0.14 2.29 6.28 -52.49 -0.33 1.96 16 28 H 0.35 6.78 7.90 -39.29 -0.31 6.47 16 29 H 0.33 5.88 7.21 -39.29 -0.28 5.60 16 30 H 0.01 0.15 8.00 -51.93 -0.42 -0.27 16 31 H 0.02 0.58 7.64 -51.93 -0.40 0.19 16 32 H 0.27 8.17 7.22 -40.82 -0.29 7.88 16 LS Contribution 284.05 15.07 4.28 4.28 Total: -1.00 -30.07 284.05 -7.72 -37.79 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -3.52 Total: 9.64 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -1.93 Total: -23.33 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.71 Total: -42.56 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.08 Total: 19.75 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -2.20 Total: -3.38 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.07 -7.72 -37.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260516575.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.207 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds