Wall clock time and date at job start Mon Mar 30 2020 07:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76199 * 102.99762 * 2 1 4 4 C 1.39011 * 120.06986 * 0.02562 * 3 2 1 5 5 C 1.38074 * 119.97329 * 179.97438 * 4 3 2 6 6 C 1.38284 * 120.09956 * 359.75043 * 5 4 3 7 7 C 1.38514 * 120.13781 * 0.50627 * 6 5 4 8 8 F 1.35104 * 119.98499 * 179.76482 * 7 6 5 9 9 C 1.38316 * 120.02867 * 359.49276 * 7 6 5 10 10 C 1.50694 * 120.05534 * 180.27552 * 9 7 6 11 11 H 1.08999 * 109.47737 * 194.99760 * 10 9 7 12 12 N 1.46907 * 109.47023 * 314.99967 * 10 9 7 13 13 C 1.53006 * 109.47131 * 74.99567 * 10 9 7 14 14 C 1.50705 * 109.47047 * 175.00207 * 13 10 9 15 15 H 1.08001 * 119.99989 * 359.97438 * 14 13 10 16 16 C 1.37873 * 119.99912 * 180.02562 * 14 13 10 17 17 N 1.31507 * 120.00325 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.47000 * 90.00198 * 18 16 14 20 20 H 1.48499 * 109.47056 * 210.00015 * 18 16 14 21 21 H 1.48501 * 109.47344 * 330.00114 * 18 16 14 22 22 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46887 * 299.99623 * 1 2 3 24 24 H 1.08997 * 109.47668 * 60.00062 * 1 2 3 25 25 H 1.07998 * 120.01516 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.94702 * 179.97438 * 5 4 3 27 27 H 1.08001 * 119.93061 * 180.27129 * 6 5 4 28 28 H 1.00903 * 110.99535 * 296.04049 * 12 10 9 29 29 H 1.00895 * 110.99693 * 59.99900 * 12 10 9 30 30 H 1.08997 * 109.47098 * 295.00367 * 13 10 9 31 31 H 1.09000 * 109.46862 * 55.00397 * 13 10 9 32 32 H 0.97003 * 120.00358 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1948 2.6661 0.0005 5 6 1.5076 4.0109 0.0011 6 6 2.8299 4.4154 0.0063 7 6 3.8453 3.4733 0.0004 8 9 5.1362 3.8719 0.0007 9 6 3.5383 2.1246 -0.0001 10 6 4.6425 1.0992 -0.0002 11 1 4.2334 0.1246 -0.2666 12 7 5.6680 1.4839 -0.9793 13 6 5.2701 1.0253 1.3932 14 6 6.2896 -0.0840 1.4268 15 1 6.4714 -0.6773 0.5429 16 6 6.9895 -0.3422 2.5863 17 7 7.8788 -1.3106 2.6159 18 14 6.6745 0.6835 4.1154 19 1 5.5966 0.0542 4.9202 20 1 7.9169 0.7593 4.9253 21 1 6.2594 2.0524 3.7165 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 0.1615 2.3518 0.0014 26 1 0.7183 4.7480 0.0011 27 1 3.0715 5.4680 0.0111 28 1 5.2938 1.4770 -1.9164 29 1 6.0629 2.3847 -0.7541 30 1 5.7567 1.9731 1.6232 31 1 4.4931 0.8272 2.1316 32 1 8.3714 -1.4920 3.4316 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260575102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:27 Heat of formation + Delta-G solvation = -20.336921 kcal Electronic energy + Delta-G solvation = -16826.830134 eV Core-core repulsion = 14020.930191 eV Total energy + Delta-G solvation = -2805.899943 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.86060 -39.08588 -35.57885 -32.34036 -31.08037 -30.15543 -28.81794 -28.73849 -24.44309 -23.02814 -22.02624 -19.98497 -18.03494 -16.86951 -16.58097 -15.87817 -15.62255 -15.47559 -14.81802 -14.31867 -14.16931 -13.86047 -13.82476 -13.38621 -13.04267 -12.68473 -12.38038 -12.30137 -11.95755 -11.52630 -11.35767 -11.00724 -10.40557 -10.21118 -10.03283 -9.62521 -9.59618 -9.05406 -8.57020 -8.39376 -7.96016 -7.35000 -5.87584 -3.82021 1.05038 1.19321 1.51132 2.43291 3.39096 3.46007 3.49117 3.50608 4.34788 4.57912 4.73432 4.89755 4.91028 4.94445 4.97461 5.29122 5.34768 5.50820 5.53382 5.58092 5.89926 5.98452 6.08404 6.21313 6.32795 6.59651 6.84716 7.13611 7.37338 7.83541 7.98257 8.18431 8.73894 9.24658 9.74717 11.26187 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.008088 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.060407 B = 3460.962677 C = 4071.240316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 S -0.069 6.069 3 C -0.062 4.062 4 C -0.147 4.147 5 C -0.085 4.085 6 C -0.161 4.161 7 C 0.115 3.885 8 F -0.128 7.128 9 C -0.123 4.123 10 C 0.145 3.855 11 H 0.093 0.907 12 N -0.822 5.822 13 C 0.001 3.999 14 C -0.490 4.490 15 H 0.081 0.919 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.870 3.130 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.268 1.268 22 H 0.108 0.892 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.127 0.873 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.323 0.677 29 H 0.342 0.658 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.876 9.515 -6.424 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 S 0.175 5.825 3 C -0.176 4.176 4 C -0.171 4.171 5 C -0.105 4.105 6 C -0.183 4.183 7 C 0.093 3.907 8 F -0.106 7.106 9 C -0.132 4.132 10 C 0.032 3.968 11 H 0.111 0.889 12 N -0.352 5.352 13 C -0.036 4.036 14 C -0.528 4.528 15 H 0.100 0.900 16 C -0.135 4.135 17 N -0.546 5.546 18 Si 0.698 3.302 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.193 1.193 22 H 0.126 0.874 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.145 0.855 26 H 0.149 0.851 27 H 0.152 0.848 28 H 0.134 0.866 29 H 0.160 0.840 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.637 7.696 -6.051 18.449 hybrid contribution -1.427 2.638 0.773 3.097 sum -17.064 10.334 -5.278 20.635 Atomic orbital electron populations 1.23809 0.97082 1.07007 1.05226 1.86172 1.03789 1.01128 1.91401 1.21570 0.95122 0.97756 1.03124 1.21160 0.98234 0.93091 1.04612 1.20761 0.95484 0.95360 0.98877 1.21108 0.92462 0.99464 1.05226 1.17442 0.78577 0.92102 1.02545 1.91391 1.34670 1.90895 1.93687 1.21267 0.95911 0.94924 1.01095 1.20603 0.86077 0.93722 0.96369 0.88879 1.58831 1.34696 1.37966 1.03725 1.19607 0.96059 0.98325 0.89648 1.20971 1.18737 1.14407 0.98711 0.90044 1.24957 0.95185 0.95052 0.98355 1.69901 1.25871 1.31007 1.27791 0.86937 0.77605 0.81689 0.84013 1.20416 1.21451 1.19329 0.87389 0.89906 0.90081 0.85519 0.85111 0.84830 0.86563 0.84021 0.96497 0.96605 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.15 101.05 0.92 -0.59 16 2 S -0.07 -1.01 20.56 -107.50 -2.21 -3.22 16 3 C -0.06 -0.96 6.11 -39.04 -0.24 -1.20 16 4 C -0.15 -1.81 9.36 -39.36 -0.37 -2.18 16 5 C -0.08 -0.97 10.04 -39.62 -0.40 -1.36 16 6 C -0.16 -2.11 10.02 -39.46 -0.40 -2.51 16 7 C 0.11 1.90 7.02 -39.45 -0.28 1.62 16 8 F -0.13 -2.26 13.93 2.25 0.03 -2.23 16 9 C -0.12 -2.19 4.96 -104.34 -0.52 -2.71 16 10 C 0.14 3.05 2.62 -68.86 -0.18 2.87 16 11 H 0.09 2.02 6.23 -51.93 -0.32 1.70 16 12 N -0.82 -16.58 8.83 -5.65 -0.05 -16.63 16 13 C 0.00 0.03 3.62 -27.88 -0.10 -0.07 16 14 C -0.49 -14.51 9.39 -34.44 -0.32 -14.84 16 15 H 0.08 2.62 7.99 -52.49 -0.42 2.21 16 16 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.91 -28.89 13.96 55.43 0.77 -28.12 16 18 Si 0.87 22.69 27.47 -169.99 -4.67 18.02 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.27 -6.84 6.54 56.52 0.37 -6.47 16 22 H 0.11 0.84 8.14 -51.92 -0.42 0.42 16 23 H 0.08 0.70 7.75 -51.92 -0.40 0.30 16 24 H 0.08 0.63 7.75 -51.93 -0.40 0.23 16 25 H 0.13 1.21 5.88 -52.49 -0.31 0.90 16 26 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.32 5.56 9.06 -39.29 -0.36 5.20 16 29 H 0.34 6.76 6.13 -39.29 -0.24 6.52 16 30 H 0.02 0.44 6.80 -51.93 -0.35 0.09 16 31 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 32 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 280.98 15.07 4.23 4.23 Total: -1.00 -33.11 280.98 -7.50 -40.60 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.63 Total: 6.44 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -1.97 Total: -19.10 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.72 Total: -44.75 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.03 Total: -2.23 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.21 Total: -3.22 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.11 -7.50 -40.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260575102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.266 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds