Wall clock time and date at job start Mon Mar 30 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47261 * 2 1 4 4 C 1.53004 * 109.47044 * 120.00254 * 2 1 3 5 5 H 1.09004 * 109.46781 * 298.48022 * 4 2 1 6 6 C 1.50700 * 109.47461 * 58.47932 * 4 2 1 7 7 H 1.08002 * 119.99849 * 27.16570 * 6 4 2 8 8 C 1.37872 * 119.99716 * 207.17090 * 6 4 2 9 9 N 1.31511 * 120.00823 * 5.80873 * 8 6 4 10 10 Si 1.86802 * 119.99622 * 185.81021 * 8 6 4 11 11 H 1.48506 * 109.47050 * 60.00001 * 10 8 6 12 12 H 1.48501 * 109.47440 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47523 * 299.99933 * 10 8 6 14 14 C 1.50701 * 109.47034 * 178.48281 * 4 2 1 15 15 C 1.38081 * 120.34624 * 299.99759 * 14 4 2 16 16 N 1.31953 * 120.85393 * 180.02562 * 15 14 4 17 17 C 1.32245 * 121.65956 * 359.97438 * 16 15 14 18 18 O 1.35701 * 119.69141 * 179.97438 * 17 16 15 19 19 C 1.38983 * 120.62072 * 0.25456 * 17 16 15 20 20 Cl 1.73601 * 120.45577 * 179.74311 * 19 17 16 21 21 C 1.38505 * 119.09070 * 359.50107 * 19 17 16 22 22 H 1.09006 * 109.47016 * 294.51307 * 1 2 3 23 23 H 1.08999 * 109.47450 * 54.51706 * 1 2 3 24 24 H 1.09004 * 109.47006 * 174.51725 * 1 2 3 25 25 H 1.08997 * 109.47223 * 240.00019 * 2 1 3 26 26 H 1.08997 * 109.46930 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47079 * 300.00068 * 3 2 1 28 28 H 1.08997 * 109.46986 * 59.99874 * 3 2 1 29 29 H 0.96997 * 120.00489 * 180.02562 * 9 8 6 30 30 H 1.07999 * 119.57584 * 0.04350 * 15 14 4 31 31 H 0.96698 * 114.00294 * 89.99738 * 18 17 16 32 32 H 1.08005 * 120.76245 * 180.24350 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6990 -0.1920 2.1390 6 6 1.5071 -2.1308 1.2682 7 1 1.2612 -2.6277 0.3414 8 6 1.3336 -2.7860 2.4689 9 7 1.5234 -2.1450 3.6014 10 14 0.8288 -4.5844 2.4869 11 1 1.8549 -5.3937 1.7816 12 1 0.7105 -5.0514 3.8917 13 1 -0.4798 -4.7383 1.8019 14 6 3.5465 -0.7540 1.2306 15 6 4.2181 -1.3737 0.1954 16 7 5.5369 -1.4087 0.1693 17 6 6.2650 -0.8560 1.1249 18 8 7.6191 -0.9160 1.0581 19 6 5.6564 -0.2192 2.1999 20 17 6.6163 0.4991 3.4554 21 6 4.2736 -0.1612 2.2533 22 1 -0.3633 0.4264 0.9351 23 1 -0.3634 0.5965 -0.8368 24 1 -0.3633 -1.0230 -0.0982 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.4017 -2.6061 4.4460 30 1 3.6568 -1.8356 -0.6033 31 1 8.0232 -0.1727 0.5899 32 1 3.7726 0.3303 3.0742 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260913257.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:30 Heat of formation + Delta-G solvation = -52.998281 kcal Electronic energy + Delta-G solvation = -17005.687205 eV Core-core repulsion = 14183.954463 eV Total energy + Delta-G solvation = -2821.732742 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.46665 -38.68744 -37.55229 -37.01068 -34.31734 -33.23852 -31.43278 -28.74085 -27.52027 -25.36251 -24.70520 -23.11712 -20.52945 -19.80459 -18.66672 -17.81092 -17.03338 -16.61229 -16.43818 -15.63641 -15.09225 -14.86285 -14.36933 -14.07528 -13.75968 -13.55688 -13.38569 -12.95119 -12.89098 -12.80683 -12.72639 -12.48550 -12.21689 -12.10147 -11.86712 -11.49575 -11.24692 -10.87276 -10.64357 -10.37036 -10.30522 -9.41243 -8.13370 -6.19364 0.00655 0.27731 1.03838 1.41837 1.45139 1.49030 2.42169 2.60203 2.79223 3.20439 3.75730 4.01907 4.17516 4.27184 4.43399 4.48782 4.55001 4.71697 4.96261 5.02868 5.13958 5.16058 5.23090 5.33426 5.51569 5.58267 5.63791 5.69694 5.85328 5.95772 6.32715 6.60129 6.92563 6.93025 7.46582 8.93628 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.008253 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.951600 B = 3391.916912 C = 3981.172337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 C -0.138 4.138 4 C 0.081 3.919 5 H 0.036 0.964 6 C -0.508 4.508 7 H 0.063 0.937 8 C 0.024 3.976 9 N -0.912 5.912 10 Si 0.935 3.065 11 H -0.278 1.278 12 H -0.293 1.293 13 H -0.266 1.266 14 C -0.068 4.068 15 C 0.117 3.883 16 N -0.503 5.503 17 C 0.281 3.719 18 O -0.478 6.478 19 C -0.102 4.102 20 Cl -0.050 7.050 21 C -0.067 4.067 22 H 0.035 0.965 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.260 0.740 30 H 0.169 0.831 31 H 0.413 0.587 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 6.808 -5.179 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 C -0.195 4.195 4 C 0.061 3.939 5 H 0.055 0.945 6 C -0.546 4.546 7 H 0.081 0.919 8 C -0.177 4.177 9 N -0.550 5.550 10 Si 0.762 3.238 11 H -0.203 1.203 12 H -0.219 1.219 13 H -0.191 1.191 14 C -0.071 4.071 15 C -0.040 4.040 16 N -0.222 5.222 17 C 0.101 3.899 18 O -0.287 6.287 19 C -0.132 4.132 20 Cl -0.021 7.021 21 C -0.094 4.094 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.186 0.814 31 H 0.273 0.727 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.460 5.939 -5.226 9.613 hybrid contribution -0.445 -0.341 1.187 1.312 sum 5.015 5.599 -4.039 8.533 Atomic orbital electron populations 1.21574 0.95077 1.01160 1.00181 1.21140 0.96158 0.95206 0.97674 1.21811 0.99934 0.96281 1.01521 1.17944 0.84977 0.95561 0.95389 0.94547 1.21260 1.41806 0.99102 0.92394 0.91864 1.25582 0.95397 1.00846 0.95842 1.69994 1.50183 1.37223 0.97617 0.85959 0.79133 0.82050 0.76681 1.20344 1.21868 1.19069 1.21724 1.00397 0.92785 0.92164 1.22526 0.87481 0.95590 0.98376 1.67287 1.08873 1.18489 1.27518 1.18787 0.85273 0.95592 0.90226 1.84774 1.12928 1.51984 1.78984 1.22169 0.92911 1.03822 0.94347 1.98325 1.71136 1.81661 1.50978 1.21488 0.90824 0.98060 0.98985 0.94605 0.92130 0.93417 0.91884 0.94078 0.91553 0.93527 0.93138 0.81369 0.72725 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.13 8.81 71.98 0.63 -3.49 16 2 C -0.08 -2.91 2.34 -10.79 -0.03 -2.93 16 3 C -0.14 -4.15 8.97 71.98 0.65 -3.51 16 4 C 0.08 3.47 1.60 -12.28 -0.02 3.45 16 5 H 0.04 1.79 7.25 -2.38 -0.02 1.77 16 6 C -0.51 -24.49 6.74 25.60 0.17 -24.32 16 7 H 0.06 2.97 7.75 -2.91 -0.02 2.95 16 8 C 0.02 1.21 5.45 84.65 0.46 1.67 16 9 N -0.91 -49.63 12.88 21.44 0.28 -49.36 16 10 Si 0.93 41.76 29.54 68.60 2.03 43.78 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 13 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 14 C -0.07 -2.78 3.59 -19.77 -0.07 -2.85 16 15 C 0.12 4.55 9.97 84.64 0.84 5.39 16 16 N -0.50 -19.34 10.39 -308.85 -3.21 -22.55 16 17 C 0.28 10.11 7.74 84.81 0.66 10.77 16 18 O -0.48 -14.35 13.03 -90.21 -1.18 -15.52 16 19 C -0.10 -3.71 6.36 22.51 0.14 -3.57 16 20 Cl -0.05 -1.54 28.54 -2.72 -0.08 -1.62 16 21 C -0.07 -2.68 9.60 22.46 0.22 -2.46 16 22 H 0.03 1.26 8.14 -2.38 -0.02 1.25 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.05 1.72 7.33 -2.38 -0.02 1.70 16 25 H 0.06 2.11 7.35 -2.39 -0.02 2.09 16 26 H 0.04 1.25 7.26 -2.39 -0.02 1.23 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 30 H 0.17 6.09 7.56 -2.91 -0.02 6.06 16 31 H 0.41 7.86 9.06 -74.06 -0.67 7.19 16 32 H 0.13 5.45 8.00 -2.91 -0.02 5.43 16 Total: -1.00 -56.60 289.34 1.96 -54.64 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.46 Total: 12.49 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 3.66 Total: -21.86 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -2.93 Total: -71.90 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -1.18 Total: -15.52 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -56.60 1.96 -54.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260913257.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.640 kcal (2) G-P(sol) polarization free energy of solvation -56.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds