Wall clock time and date at job start Mon Mar 30 2020 06:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35921 * 116.99945 * 2 1 4 4 C 1.38745 * 120.04411 * 359.97438 * 3 2 1 5 5 C 1.38117 * 119.95925 * 180.02562 * 4 3 2 6 6 C 1.38390 * 120.04228 * 359.97438 * 5 4 3 7 7 Cl 1.73601 * 119.95803 * 179.97438 * 6 5 4 8 8 C 1.38350 * 120.08299 * 359.79499 * 6 5 4 9 9 C 1.38161 * 120.04270 * 0.46264 * 8 6 5 10 10 C 1.50699 * 120.02078 * 179.79424 * 9 8 6 11 11 H 1.09002 * 109.47102 * 179.72149 * 10 9 8 12 12 C 1.50701 * 109.47177 * 299.71910 * 10 9 8 13 13 H 1.08001 * 119.99788 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00097 * 179.97438 * 12 10 9 15 15 N 1.31517 * 120.00175 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99941 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47049 * 60.00349 * 16 14 12 18 18 H 1.48499 * 109.47266 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47080 * 300.00212 * 16 14 12 20 20 C 1.53002 * 109.47065 * 59.71740 * 10 9 8 21 21 N 1.46906 * 109.47053 * 65.00331 * 20 10 9 22 22 H 1.09005 * 109.47120 * 300.00174 * 1 2 3 23 23 H 1.08998 * 109.47673 * 60.00017 * 1 2 3 24 24 H 1.09006 * 109.47232 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.01952 * 0.04520 * 4 3 2 26 26 H 1.08003 * 119.98137 * 179.97438 * 5 4 3 27 27 H 1.08002 * 119.97239 * 180.22803 * 8 6 5 28 28 H 0.96996 * 120.00140 * 179.97438 * 15 14 12 29 29 H 1.08992 * 109.47056 * 305.00001 * 20 10 9 30 30 H 1.09004 * 109.47006 * 185.00118 * 20 10 9 31 31 H 1.00897 * 110.99706 * 179.97438 * 21 20 10 32 32 H 1.00899 * 110.99484 * 303.95475 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9201 3.6050 -0.0011 6 6 3.3022 3.6764 -0.0005 7 17 4.0903 5.2232 -0.0019 8 6 4.0565 2.5166 0.0048 9 6 3.4311 1.2847 0.0000 10 6 4.2533 0.0217 0.0011 11 1 3.5902 -0.8434 0.0018 12 6 5.1228 -0.0128 -1.2292 13 1 5.0842 0.7989 -1.9406 14 6 5.9683 -1.0800 -1.4462 15 7 6.0157 -2.0682 -0.5796 16 14 7.0466 -1.1223 -2.9710 17 1 7.9496 0.0566 -2.9716 18 1 7.8567 -2.3669 -2.9700 19 1 6.1903 -1.0906 -4.1838 20 6 5.1359 -0.0111 1.2505 21 7 4.2880 -0.0983 2.4469 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 0.2126 2.3199 -0.0002 26 1 1.3329 4.5114 -0.0019 27 1 5.1350 2.5745 0.0090 28 1 6.6102 -2.8191 -0.7325 29 1 5.7356 0.8979 1.2956 30 1 5.7942 -0.8788 1.2076 31 1 4.8479 -0.1218 3.2859 32 1 3.6243 0.6611 2.4758 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261242991.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:50 Heat of formation + Delta-G solvation = -45.474937 kcal Electronic energy + Delta-G solvation = -17007.396045 eV Core-core repulsion = 14185.989540 eV Total energy + Delta-G solvation = -2821.406505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.19580 -38.61336 -37.46439 -36.52542 -34.14486 -32.53779 -30.81785 -29.30890 -27.89402 -25.87816 -24.06321 -22.90789 -21.29366 -18.87849 -18.47077 -17.46641 -16.94747 -16.66533 -16.44136 -16.09692 -15.34790 -15.27637 -14.62060 -14.55615 -14.24892 -13.80067 -13.40204 -13.06391 -12.87676 -12.82236 -12.59024 -12.44503 -12.21377 -12.07280 -11.93617 -11.50344 -11.23323 -11.07609 -10.50170 -9.73343 -9.33453 -8.87220 -8.07328 -6.22712 0.35309 0.42445 1.26545 1.42197 1.42879 1.50807 2.42728 2.56589 2.77804 3.18019 3.88514 3.93618 4.09098 4.27484 4.37921 4.48660 4.51800 4.69444 4.72298 4.78530 5.02789 5.11205 5.17973 5.33475 5.35486 5.58791 5.77587 5.95729 6.01013 6.29490 6.57118 6.62604 6.77905 6.92850 7.44636 8.95648 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.016274 B = 0.008444 C = 0.006857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.148849 B = 3314.984285 C = 4082.674267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.116 3.884 4 C -0.191 4.191 5 C -0.083 4.083 6 C -0.077 4.077 7 Cl -0.076 7.076 8 C -0.082 4.082 9 C -0.084 4.084 10 C 0.095 3.905 11 H 0.016 0.984 12 C -0.527 4.527 13 H 0.050 0.950 14 C 0.018 3.982 15 N -0.910 5.910 16 Si 0.951 3.049 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.274 1.274 20 C 0.081 3.919 21 N -0.847 5.847 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.108 0.892 25 H 0.166 0.834 26 H 0.161 0.839 27 H 0.118 0.882 28 H 0.262 0.738 29 H -0.004 1.004 30 H 0.075 0.925 31 H 0.336 0.664 32 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 10.247 2.651 14.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.071 3.929 4 C -0.209 4.209 5 C -0.101 4.101 6 C -0.104 4.104 7 Cl -0.048 7.048 8 C -0.101 4.101 9 C -0.085 4.085 10 C 0.077 3.923 11 H 0.034 0.966 12 C -0.565 4.565 13 H 0.068 0.932 14 C -0.182 4.182 15 N -0.549 5.549 16 Si 0.777 3.223 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.049 4.049 21 N -0.376 5.376 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.126 0.874 25 H 0.183 0.817 26 H 0.179 0.821 27 H 0.136 0.864 28 H 0.071 0.929 29 H 0.014 0.986 30 H 0.093 0.907 31 H 0.148 0.852 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.928 9.306 2.377 13.814 hybrid contribution 1.216 0.738 -0.545 1.523 sum -8.712 10.044 1.832 13.421 Atomic orbital electron populations 1.23349 0.76886 1.05163 1.02385 1.86237 1.23116 1.26843 1.88233 1.19151 0.91799 0.85253 0.96723 1.21393 1.01279 0.90443 1.07797 1.20966 0.91518 0.98774 0.98853 1.20820 0.93437 0.85817 1.10281 1.98317 1.81121 1.28023 1.97321 1.20659 0.99879 0.90045 0.99482 1.19761 0.91566 0.96276 1.00865 1.17471 0.92303 0.89716 0.92850 0.96560 1.21356 1.22917 1.05536 1.06728 0.93195 1.25697 0.98208 0.95114 0.99145 1.70019 1.38832 1.09427 1.36599 0.85721 0.78916 0.77525 0.80179 1.19526 1.20753 1.19967 1.21768 0.95096 0.98576 0.89481 1.58783 1.21648 1.52409 1.04773 0.90959 0.91483 0.87385 0.81651 0.82130 0.86380 0.92892 0.98589 0.90711 0.85247 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.33 -12.44 9.26 -92.66 -0.86 -13.30 16 3 C 0.12 4.33 6.66 22.50 0.15 4.48 16 4 C -0.19 -5.33 9.04 22.36 0.20 -5.12 16 5 C -0.08 -2.23 9.82 22.28 0.22 -2.01 16 6 C -0.08 -2.48 6.32 22.33 0.14 -2.33 16 7 Cl -0.08 -2.17 28.95 -2.72 -0.08 -2.24 16 8 C -0.08 -3.21 8.44 22.28 0.19 -3.02 16 9 C -0.08 -3.60 3.78 -19.77 -0.07 -3.68 16 10 C 0.10 4.93 2.12 -12.29 -0.03 4.90 16 11 H 0.02 0.97 6.99 -2.39 -0.02 0.95 16 12 C -0.53 -29.44 8.25 25.60 0.21 -29.23 16 13 H 0.05 2.78 7.61 -2.91 -0.02 2.76 16 14 C 0.02 0.99 5.29 84.65 0.45 1.44 16 15 N -0.91 -53.06 11.29 21.45 0.24 -52.82 16 16 Si 0.95 44.10 29.54 68.60 2.03 46.12 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 20 C 0.08 3.99 5.98 86.30 0.52 4.50 16 21 N -0.85 -35.08 9.62 -186.71 -1.80 -36.87 16 22 H 0.07 1.35 7.66 -2.38 -0.02 1.33 16 23 H 0.07 1.32 7.66 -2.39 -0.02 1.30 16 24 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 25 H 0.17 3.29 6.30 -2.91 -0.02 3.28 16 26 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 27 H 0.12 4.94 7.53 -2.91 -0.02 4.92 16 28 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.00 -0.19 7.21 -2.39 -0.02 -0.21 16 30 H 0.07 4.17 5.95 -2.38 -0.01 4.16 16 31 H 0.34 11.99 9.08 -89.70 -0.81 11.17 16 32 H 0.33 12.71 8.07 -89.69 -0.72 11.98 16 Total: -1.00 -64.47 284.07 2.24 -62.22 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.38 Total: 25.46 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 3.09 Total: -28.57 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -1.55 Total: -89.69 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.86 Total: -13.30 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.08 Total: -2.24 kcal Total: -64.47 2.24 -62.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261242991.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.746 kcal (2) G-P(sol) polarization free energy of solvation -64.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds