Wall clock time and date at job start Mon Mar 30 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35907 * 117.00113 * 2 1 4 4 C 1.38766 * 120.04512 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.96710 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.06819 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.94965 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47318 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47660 * 59.99588 * 7 6 5 10 10 H 1.08008 * 119.99548 * 354.56391 * 9 7 6 11 11 C 1.37871 * 120.00307 * 174.55273 * 9 7 6 12 12 N 1.31518 * 120.00115 * 350.58169 * 11 9 7 13 13 Si 1.86802 * 120.00133 * 170.57712 * 11 9 7 14 14 H 1.48507 * 109.46928 * 60.00293 * 13 11 9 15 15 H 1.48495 * 109.47387 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47015 * 300.00647 * 13 11 9 17 17 C 1.53006 * 109.47234 * 299.99619 * 7 6 5 18 18 N 1.46894 * 109.47201 * 296.84677 * 17 7 6 19 19 C 1.38363 * 120.10050 * 359.95880 * 6 5 4 20 20 Cl 1.73604 * 119.98784 * 180.02562 * 19 6 5 21 21 C 1.38278 * 120.02837 * 0.03926 * 19 6 5 22 22 H 1.09001 * 109.46770 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47496 * 300.00701 * 1 2 3 24 24 H 1.09004 * 109.46913 * 60.00609 * 1 2 3 25 25 H 1.07994 * 120.01769 * 359.97438 * 4 3 2 26 26 H 1.07997 * 119.96181 * 180.02562 * 5 4 3 27 27 H 0.96998 * 119.99953 * 179.97438 * 12 11 9 28 28 H 1.09006 * 109.46479 * 56.84334 * 17 7 6 29 29 H 1.08998 * 109.47455 * 176.84182 * 17 7 6 30 30 H 1.00896 * 111.00159 * 184.48449 * 18 17 7 31 31 H 1.00907 * 111.00073 * 308.43119 * 18 17 7 32 32 H 1.08003 * 120.03465 * 180.25161 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9200 3.6052 0.0011 6 6 3.3007 3.6773 0.0005 7 6 3.9840 5.0205 0.0005 8 1 5.0647 4.8785 -0.0004 9 6 3.5790 5.7902 1.2312 10 1 2.8292 5.3886 1.8968 11 6 4.1658 7.0068 1.5076 12 7 5.2035 7.4105 0.8077 13 14 3.4868 8.0819 2.8760 14 1 3.5596 7.3475 4.1648 15 1 4.2883 9.3284 2.9702 16 1 2.0724 8.4245 2.5808 17 6 3.5719 5.8023 -1.2485 18 7 4.0333 5.0892 -2.4469 19 6 4.0561 2.5181 0.0003 20 17 5.7896 2.6120 0.0003 21 6 3.4309 1.2847 -0.0002 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.2126 2.3200 0.0005 26 1 1.3324 4.5114 0.0019 27 1 5.6161 8.2666 1.0019 28 1 2.4862 5.8958 -1.2767 29 1 4.0215 6.7949 -1.2206 30 1 3.8379 5.6210 -3.2818 31 1 5.0157 4.8685 -2.3806 32 1 4.0204 0.3798 0.0038 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261249373.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:36 Heat of formation + Delta-G solvation = -46.041241 kcal Electronic energy + Delta-G solvation = -16811.861118 eV Core-core repulsion = 13990.430057 eV Total energy + Delta-G solvation = -2821.431062 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.03698 -38.99327 -37.16233 -36.34526 -34.11704 -32.15215 -31.55051 -29.13494 -27.68043 -25.71365 -24.09267 -22.98491 -21.26178 -19.09881 -18.50485 -17.25493 -16.82077 -16.55950 -16.39828 -15.89666 -15.56307 -15.03053 -14.73619 -14.54064 -14.26241 -13.86791 -13.58821 -13.05342 -12.93956 -12.81676 -12.61013 -12.42544 -12.27574 -11.80452 -11.74727 -11.52765 -11.19083 -11.07136 -10.40652 -9.67053 -9.32319 -8.84468 -8.11215 -6.19672 0.33679 0.61114 1.31174 1.43129 1.43845 1.51050 2.43814 2.54207 2.86718 3.18318 3.92842 4.06338 4.13166 4.26628 4.42628 4.47765 4.58386 4.64854 4.78267 4.82748 5.00859 5.06273 5.32832 5.38312 5.49386 5.58635 5.74786 5.85472 6.08375 6.24770 6.51783 6.52289 6.76248 6.94719 7.45863 8.94889 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021041 B = 0.007381 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.423340 B = 3792.672301 C = 4274.933401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.113 3.887 4 C -0.194 4.194 5 C -0.074 4.074 6 C -0.059 4.059 7 C 0.076 3.924 8 H 0.035 0.965 9 C -0.524 4.524 10 H 0.053 0.947 11 C 0.022 3.978 12 N -0.913 5.913 13 Si 0.945 3.055 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.268 1.268 17 C 0.088 3.912 18 N -0.845 5.845 19 C -0.015 4.015 20 Cl -0.073 7.073 21 C -0.154 4.154 22 H 0.123 0.877 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.156 0.844 26 H 0.127 0.873 27 H 0.261 0.739 28 H 0.046 0.954 29 H 0.015 0.985 30 H 0.336 0.664 31 H 0.332 0.668 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -10.395 -3.153 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.067 3.933 4 C -0.213 4.213 5 C -0.092 4.092 6 C -0.060 4.060 7 C 0.057 3.943 8 H 0.053 0.947 9 C -0.562 4.562 10 H 0.071 0.929 11 C -0.177 4.177 12 N -0.552 5.552 13 Si 0.771 3.229 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.193 1.193 17 C -0.043 4.043 18 N -0.373 5.373 19 C -0.042 4.042 20 Cl -0.044 7.044 21 C -0.174 4.174 22 H 0.141 0.859 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.173 0.827 26 H 0.145 0.855 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.924 -10.993 -2.951 13.869 hybrid contribution 0.640 1.909 0.589 2.098 sum -7.285 -9.083 -2.361 11.881 Atomic orbital electron populations 1.23348 0.76437 1.05582 1.02218 1.86003 1.23430 1.25982 1.89138 1.18618 0.91318 0.84850 0.98476 1.21464 1.01147 0.91286 1.07398 1.20807 0.93307 0.97690 0.97444 1.20039 0.93950 0.95027 0.96961 1.17830 0.96034 0.87653 0.92787 0.94708 1.21316 1.22450 1.04106 1.08353 0.92914 1.25617 0.94554 0.99133 0.98426 1.70062 1.21184 1.21385 1.42550 0.85804 0.78830 0.78238 0.79987 1.20098 1.21196 1.19307 1.21643 0.97656 0.95316 0.89711 1.58918 1.23187 1.50727 1.04514 1.20532 0.84282 0.94126 1.05223 1.98311 1.10653 1.98440 1.96956 1.20159 0.92497 0.96623 1.08082 0.85919 0.91962 0.91789 0.82685 0.85470 0.93033 0.93520 0.96700 0.85293 0.85642 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -8.99 10.50 -92.50 -0.97 -9.97 16 3 C 0.11 3.60 6.69 22.50 0.15 3.76 16 4 C -0.19 -6.09 9.04 22.37 0.20 -5.88 16 5 C -0.07 -2.81 8.61 22.25 0.19 -2.62 16 6 C -0.06 -2.52 4.43 -19.83 -0.09 -2.61 16 7 C 0.08 3.68 1.82 -12.29 -0.02 3.66 16 8 H 0.03 1.85 6.10 -2.39 -0.01 1.84 16 9 C -0.52 -27.92 8.19 25.60 0.21 -27.71 16 10 H 0.05 2.80 7.55 -2.91 -0.02 2.78 16 11 C 0.02 1.20 5.18 84.65 0.44 1.64 16 12 N -0.91 -51.44 12.15 21.45 0.26 -51.18 16 13 Si 0.95 42.69 29.55 68.60 2.03 44.71 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 15 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 C 0.09 3.98 5.95 86.31 0.51 4.49 16 18 N -0.85 -32.44 9.32 -186.72 -1.74 -34.18 16 19 C -0.01 -0.60 6.31 22.31 0.14 -0.46 16 20 Cl -0.07 -2.83 27.00 -2.72 -0.07 -2.91 16 21 C -0.15 -5.41 9.77 22.39 0.22 -5.19 16 22 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 24 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 25 H 0.16 3.69 6.30 -2.91 -0.02 3.67 16 26 H 0.13 4.78 7.55 -2.91 -0.02 4.76 16 27 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 28 H 0.05 2.08 7.28 -2.38 -0.02 2.06 16 29 H 0.01 0.76 6.83 -2.39 -0.02 0.74 16 30 H 0.34 11.04 9.08 -89.70 -0.81 10.23 16 31 H 0.33 12.95 8.93 -89.69 -0.80 12.15 16 32 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -60.44 285.08 2.12 -58.32 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.46 Total: 24.70 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 3.07 Total: -29.50 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -1.48 Total: -85.37 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.97 Total: -9.97 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.07 Total: -2.91 kcal Total: -60.44 2.12 -58.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261249373.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.283 kcal (2) G-P(sol) polarization free energy of solvation -60.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds