Wall clock time and date at job start Mon Mar 30 2020 06:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35931 * 116.99919 * 2 1 4 4 C 1.38849 * 120.05821 * 269.95615 * 3 2 1 5 5 Cl 1.73603 * 120.04203 * 0.02562 * 4 3 2 6 6 C 1.38218 * 119.92252 * 179.97438 * 4 3 2 7 7 C 1.38290 * 120.04204 * 0.05852 * 6 4 3 8 8 C 1.38229 * 120.11929 * 359.97438 * 7 6 4 9 9 C 1.38195 * 120.07957 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.02475 * 179.74855 * 9 8 7 11 11 H 1.08997 * 109.47488 * 145.00037 * 10 9 8 12 12 N 1.46896 * 109.47254 * 24.99460 * 10 9 8 13 13 C 1.53001 * 109.47019 * 264.99739 * 10 9 8 14 14 C 1.50693 * 109.47262 * 185.00013 * 13 10 9 15 15 H 1.08000 * 120.00427 * 359.97438 * 14 13 10 16 16 C 1.37881 * 120.00252 * 180.02562 * 14 13 10 17 17 N 1.31523 * 119.99733 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00456 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47058 * 59.99679 * 18 16 14 20 20 H 1.48496 * 109.47446 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47264 * 299.99934 * 18 16 14 22 22 H 1.08997 * 109.46727 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47233 * 300.00258 * 1 2 3 24 24 H 1.09007 * 109.46654 * 60.00134 * 1 2 3 25 25 H 1.08001 * 119.97960 * 180.02562 * 6 4 3 26 26 H 1.07998 * 119.93867 * 179.97438 * 7 6 4 27 27 H 1.08004 * 119.96568 * 179.97438 * 8 7 6 28 28 H 1.00895 * 111.00257 * 300.00523 * 12 10 9 29 29 H 1.00908 * 110.99298 * 63.95822 * 12 10 9 30 30 H 1.09006 * 109.47465 * 305.00360 * 13 10 9 31 31 H 1.09011 * 109.46906 * 64.99760 * 13 10 9 32 32 H 0.97001 * 119.99914 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 2.3627 1.8304 -1.2018 5 17 1.9703 1.0591 -2.7067 6 6 2.9897 3.0622 -1.1985 7 6 3.3025 3.6766 0.0003 8 6 2.9888 3.0614 1.1977 9 6 2.3610 1.8303 1.2002 10 6 2.0246 1.1581 2.5064 11 1 1.0853 0.6147 2.4041 12 7 1.8908 2.1734 3.5595 13 6 3.1411 0.1807 2.8793 14 6 2.7491 -0.5804 4.1194 15 1 1.7988 -0.3862 4.5944 16 6 3.6040 -1.5240 4.6483 17 7 4.7615 -1.7602 4.0702 18 14 3.1184 -2.4670 6.1859 19 1 1.8657 -3.2219 5.9286 20 1 4.2020 -3.4157 6.5477 21 1 2.9010 -1.5135 7.3034 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 3.2360 3.5449 -2.1327 26 1 3.7928 4.6389 0.0009 27 1 3.2346 3.5433 2.1324 28 1 2.7491 2.6912 3.6737 29 1 1.1174 2.7928 3.3682 30 1 3.3007 -0.5189 2.0588 31 1 4.0608 0.7347 3.0684 32 1 5.3628 -2.4243 4.4420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261260066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:28 Heat of formation + Delta-G solvation = -43.497361 kcal Electronic energy + Delta-G solvation = -16843.125581 eV Core-core repulsion = 14021.804830 eV Total energy + Delta-G solvation = -2821.320751 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.29454 -38.41932 -37.75411 -36.70453 -34.54001 -31.28590 -31.03375 -30.17632 -27.87862 -26.30099 -23.93464 -23.26416 -21.34147 -19.01909 -18.42184 -17.64015 -17.06050 -16.76244 -16.54193 -16.22060 -15.53739 -15.15453 -14.86678 -14.55318 -14.25700 -14.03700 -13.36008 -13.17772 -12.85066 -12.75503 -12.64289 -12.48812 -12.36291 -12.16257 -11.87533 -11.51624 -11.22403 -10.96931 -10.50214 -9.72053 -9.60166 -9.45647 -8.10602 -6.17464 0.03520 0.15888 1.08376 1.42441 1.45947 1.53489 2.39827 2.48382 2.82207 3.22310 3.68448 3.83852 3.95552 4.21972 4.29435 4.35912 4.40190 4.41513 4.52295 4.68864 4.75929 4.99446 5.11058 5.24780 5.36527 5.49974 5.64472 5.70554 5.87128 6.29000 6.44180 6.49275 6.80374 6.96221 7.48814 9.01308 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026970 B = 0.006105 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.942446 B = 4585.453447 C = 4963.903522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.348 6.348 3 C 0.090 3.910 4 C -0.068 4.068 5 Cl -0.063 7.063 6 C -0.106 4.106 7 C -0.100 4.100 8 C -0.113 4.113 9 C -0.131 4.131 10 C 0.155 3.845 11 H 0.069 0.931 12 N -0.827 5.827 13 C 0.053 3.947 14 C -0.506 4.506 15 H 0.061 0.939 16 C -0.006 4.006 17 N -0.940 5.940 18 Si 0.963 3.037 19 H -0.270 1.270 20 H -0.287 1.287 21 H -0.268 1.268 22 H 0.107 0.893 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.163 0.837 26 H 0.172 0.828 27 H 0.144 0.856 28 H 0.341 0.659 29 H 0.343 0.657 30 H -0.014 1.014 31 H -0.012 1.012 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 12.223 -10.957 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.265 6.265 3 C 0.045 3.955 4 C -0.095 4.095 5 Cl -0.034 7.034 6 C -0.125 4.125 7 C -0.118 4.118 8 C -0.131 4.131 9 C -0.134 4.134 10 C 0.043 3.957 11 H 0.087 0.913 12 N -0.357 5.357 13 C 0.016 3.984 14 C -0.544 4.544 15 H 0.079 0.921 16 C -0.203 4.203 17 N -0.581 5.581 18 Si 0.788 3.212 19 H -0.195 1.195 20 H -0.213 1.213 21 H -0.193 1.193 22 H 0.125 0.875 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.181 0.819 26 H 0.189 0.811 27 H 0.161 0.839 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.004 0.996 31 H 0.007 0.993 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.989 11.252 -10.557 16.938 hybrid contribution 0.131 -0.230 -0.223 0.346 sum -6.858 11.023 -10.780 16.874 Atomic orbital electron populations 1.23131 0.77474 1.04498 1.00893 1.86093 1.21463 1.24643 1.94271 1.18521 0.99037 0.86800 0.91139 1.21565 1.05615 0.96089 0.86233 1.98338 1.92877 1.81567 1.30595 1.21308 0.97947 0.92375 1.00835 1.21481 0.98739 1.01304 0.90301 1.21281 0.97533 0.93961 1.00343 1.21558 0.99912 0.95793 0.96167 1.20150 0.99158 0.92323 0.84085 0.91287 1.58685 1.09771 1.19849 1.47408 1.18830 0.92200 0.92527 0.94839 1.21443 1.03341 1.19168 1.10479 0.92077 1.25933 0.95081 0.98471 1.00772 1.70118 1.10584 1.35200 1.42243 0.85541 0.77672 0.78295 0.79713 1.19514 1.21269 1.19272 0.87511 0.93418 0.92393 0.81906 0.81059 0.83860 0.84374 0.84366 0.99585 0.99350 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 10.80 113.37 1.22 2.18 16 2 O -0.35 -13.09 9.15 -92.78 -0.85 -13.94 16 3 C 0.09 3.18 5.69 22.52 0.13 3.30 16 4 C -0.07 -2.01 6.33 22.41 0.14 -1.87 16 5 Cl -0.06 -1.70 28.51 -2.72 -0.08 -1.78 16 6 C -0.11 -2.46 9.83 22.28 0.22 -2.24 16 7 C -0.10 -2.18 10.04 22.28 0.22 -1.95 16 8 C -0.11 -3.11 9.27 22.26 0.21 -2.91 16 9 C -0.13 -4.61 5.06 -19.77 -0.10 -4.71 16 10 C 0.15 6.37 2.65 44.17 0.12 6.49 16 11 H 0.07 2.97 6.44 -2.39 -0.02 2.95 16 12 N -0.83 -29.00 8.54 -171.81 -1.47 -30.47 16 13 C 0.05 2.89 4.60 29.85 0.14 3.02 16 14 C -0.51 -29.43 8.84 25.60 0.23 -29.20 16 15 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 16 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 17 N -0.94 -59.17 13.29 21.45 0.28 -58.89 16 18 Si 0.96 46.05 29.54 68.60 2.03 48.07 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 23 H 0.05 1.32 7.19 -2.39 -0.02 1.30 16 24 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 26 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 27 H 0.14 3.44 6.29 -2.91 -0.02 3.42 16 28 H 0.34 11.19 7.21 -89.70 -0.65 10.54 16 29 H 0.34 9.57 9.06 -89.69 -0.81 8.76 16 30 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 31 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 32 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -70.96 289.84 2.60 -68.36 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -0.31 Total: 16.45 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 2.99 Total: -27.81 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -1.18 Total: -89.36 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.85 Total: -13.94 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.08 Total: -1.78 kcal Total: -70.96 2.60 -68.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261260066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.865 kcal (2) G-P(sol) polarization free energy of solvation -70.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds