Wall clock time and date at job start Mon Mar 30 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35924 * 116.99925 * 2 1 4 4 C 1.38860 * 120.05631 * 270.02145 * 3 2 1 5 5 Cl 1.73601 * 120.04059 * 359.97438 * 4 3 2 6 6 C 1.38213 * 119.92134 * 179.97438 * 4 3 2 7 7 C 1.38286 * 120.04594 * 359.97062 * 6 4 3 8 8 C 1.38241 * 120.11299 * 359.77429 * 7 6 4 9 9 C 1.38188 * 120.07951 * 0.50292 * 8 7 6 10 10 C 1.50704 * 120.02299 * 179.74144 * 9 8 7 11 11 H 1.08997 * 109.46902 * 179.72927 * 10 9 8 12 12 C 1.50702 * 109.46652 * 59.72935 * 10 9 8 13 13 H 1.08000 * 120.00227 * 326.48154 * 12 10 9 14 14 C 1.37878 * 119.99586 * 146.47814 * 12 10 9 15 15 N 1.31510 * 120.00420 * 359.93283 * 14 12 10 16 16 Si 1.86802 * 119.99877 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47068 * 269.99876 * 16 14 12 18 18 H 1.48504 * 109.47202 * 30.00167 * 16 14 12 19 19 H 1.48508 * 109.47203 * 149.99538 * 16 14 12 20 20 C 1.53000 * 109.47307 * 299.73386 * 10 9 8 21 21 N 1.46892 * 109.46906 * 185.25678 * 20 10 9 22 22 H 1.09003 * 109.46830 * 60.00474 * 1 2 3 23 23 H 1.09002 * 109.47156 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47190 * 300.00270 * 1 2 3 25 25 H 1.07998 * 119.97635 * 179.97438 * 6 4 3 26 26 H 1.07995 * 119.94304 * 180.02562 * 7 6 4 27 27 H 1.08008 * 119.95636 * 180.27536 * 8 7 6 28 28 H 0.97003 * 120.00163 * 357.06447 * 15 14 12 29 29 H 1.09000 * 109.46912 * 305.25345 * 20 10 9 30 30 H 1.09004 * 109.47004 * 65.25419 * 20 10 9 31 31 H 1.00898 * 111.00355 * 63.71456 * 21 20 10 32 32 H 1.00908 * 110.99912 * 187.66950 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3614 1.8310 -1.2019 5 17 1.9686 1.0598 -2.7068 6 6 2.9884 3.0627 -1.1986 7 6 3.3008 3.6775 0.0000 8 6 2.9829 3.0642 1.1975 9 6 2.3612 1.8301 1.2001 10 6 2.0204 1.1601 2.5063 11 1 1.5343 0.2049 2.3086 12 6 1.0896 2.0437 3.2961 13 1 1.1787 3.1180 3.2298 14 6 0.1240 1.4806 4.1033 15 7 0.0145 0.1725 4.1830 16 14 -1.0294 2.5758 5.0829 17 1 -0.4339 2.8567 6.4140 18 1 -1.2375 3.8529 4.3542 19 1 -2.3340 1.8884 5.2593 20 6 3.3020 0.9240 3.3079 21 7 2.9863 0.1597 4.5220 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 3.2344 3.5455 -2.1329 26 1 3.7903 4.6401 0.0006 27 1 3.2241 3.5487 2.1323 28 1 0.5845 -0.3958 3.6417 29 1 4.0126 0.3636 2.7003 30 1 3.7388 1.8833 3.5857 31 1 2.6362 -0.7579 4.2908 32 1 3.7897 0.0978 5.1295 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279788.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:41 Heat of formation + Delta-G solvation = -23.949807 kcal Electronic energy + Delta-G solvation = -17251.907177 eV Core-core repulsion = 14431.434071 eV Total energy + Delta-G solvation = -2820.473105 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.67017 -36.82220 -36.29382 -35.19963 -31.90447 -31.01581 -29.70587 -27.20378 -26.08112 -23.77628 -22.58679 -21.63132 -20.03870 -17.39266 -16.72955 -15.98520 -15.57740 -15.02769 -14.68040 -14.03894 -13.82315 -13.57018 -13.34844 -13.08551 -12.71060 -12.19540 -11.95362 -11.69479 -11.27898 -11.20787 -10.92909 -10.76519 -10.69573 -10.42523 -10.09997 -9.68705 -9.31477 -8.68618 -8.25666 -8.19450 -7.97716 -7.46954 -6.22640 -3.90600 1.50963 1.72412 2.45192 3.49214 3.52024 3.65679 3.85443 4.43974 4.61663 5.15631 5.36580 5.53555 5.58276 5.70037 5.79809 5.85422 5.90274 5.98481 6.23113 6.28036 6.33488 6.44234 6.59816 6.78678 6.87239 6.95795 7.18148 7.50863 7.97713 8.08337 8.30587 8.41693 8.55518 8.98966 9.80692 11.17328 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.007595 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.587996 B = 3685.592924 C = 3860.396592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.327 6.327 3 C 0.091 3.909 4 C -0.054 4.054 5 Cl -0.080 7.080 6 C -0.130 4.130 7 C -0.118 4.118 8 C -0.100 4.100 9 C -0.032 4.032 10 C 0.060 3.940 11 H 0.056 0.944 12 C -0.581 4.581 13 H 0.045 0.955 14 C 0.041 3.959 15 N -0.894 5.894 16 Si 1.065 2.935 17 H -0.289 1.289 18 H -0.293 1.293 19 H -0.288 1.288 20 C 0.082 3.918 21 N -0.818 5.818 22 H 0.037 0.963 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.126 0.874 26 H 0.125 0.875 27 H 0.130 0.870 28 H 0.270 0.730 29 H -0.015 1.015 30 H 0.053 0.947 31 H 0.333 0.667 32 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.613 2.755 -8.523 10.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.244 6.244 3 C 0.046 3.954 4 C -0.081 4.081 5 Cl -0.051 7.051 6 C -0.149 4.149 7 C -0.136 4.136 8 C -0.118 4.118 9 C -0.033 4.033 10 C 0.041 3.959 11 H 0.074 0.926 12 C -0.618 4.618 13 H 0.063 0.937 14 C -0.166 4.166 15 N -0.529 5.529 16 Si 0.895 3.105 17 H -0.216 1.216 18 H -0.220 1.220 19 H -0.214 1.214 20 C -0.049 4.049 21 N -0.346 5.346 22 H 0.056 0.944 23 H 0.106 0.894 24 H 0.082 0.918 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.082 0.918 29 H 0.003 0.997 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.857 3.039 -7.419 8.511 hybrid contribution 1.869 -0.385 -1.616 2.500 sum 4.726 2.654 -9.035 10.536 Atomic orbital electron populations 1.22969 0.78714 1.02801 1.01140 1.85957 1.20090 1.24217 1.94131 1.18366 0.99365 0.87322 0.90341 1.21343 1.05486 0.95270 0.85976 1.98317 1.93075 1.81587 1.32158 1.20713 1.01526 0.93783 0.98841 1.21060 1.00784 0.99897 0.91882 1.21090 0.98029 0.94736 0.97993 1.20879 0.92914 0.93668 0.95861 1.18063 0.93568 0.97566 0.86695 0.92553 1.21563 1.18138 0.92726 1.29407 0.93666 1.25483 0.97158 0.97850 0.96109 1.70710 1.40436 1.03582 1.38185 0.83611 0.76139 0.74559 0.76206 1.21570 1.21958 1.21380 1.22005 0.96665 0.95898 0.90364 1.58378 1.36596 1.21620 1.18012 0.94412 0.89415 0.91822 0.85621 0.85742 0.85238 0.91794 0.99683 0.92838 0.85461 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 10.88 101.05 1.10 1.80 16 2 O -0.33 -6.73 8.72 -19.50 -0.17 -6.90 16 3 C 0.09 1.84 5.69 -39.20 -0.22 1.62 16 4 C -0.05 -0.96 6.33 -39.36 -0.25 -1.21 16 5 Cl -0.08 -1.27 28.51 -51.86 -1.48 -2.75 16 6 C -0.13 -2.04 9.83 -39.57 -0.39 -2.42 16 7 C -0.12 -1.84 10.04 -39.56 -0.40 -2.24 16 8 C -0.10 -1.87 8.64 -39.60 -0.34 -2.21 16 9 C -0.03 -0.67 4.78 -104.48 -0.50 -1.17 16 10 C 0.06 1.42 2.07 -92.92 -0.19 1.23 16 11 H 0.06 1.45 4.90 -51.93 -0.25 1.20 16 12 C -0.58 -15.23 7.87 -34.44 -0.27 -15.50 16 13 H 0.05 1.21 7.38 -52.49 -0.39 0.82 16 14 C 0.04 1.10 5.26 -17.82 -0.09 1.01 16 15 N -0.89 -25.08 13.21 55.43 0.73 -24.35 16 16 Si 1.07 24.86 29.90 -169.99 -5.08 19.78 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.08 1.78 5.88 -3.83 -0.02 1.75 16 21 N -0.82 -17.44 8.43 -10.37 -0.09 -17.53 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 24 H 0.06 1.35 8.11 -51.93 -0.42 0.92 16 25 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.13 2.37 7.57 -52.48 -0.40 1.97 16 28 H 0.27 7.50 5.47 -40.82 -0.22 7.28 16 29 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 16 30 H 0.05 1.14 7.60 -51.93 -0.39 0.75 16 31 H 0.33 7.11 8.35 -39.29 -0.33 6.78 16 32 H 0.32 5.75 9.08 -39.29 -0.36 5.39 16 LS Contribution 286.36 15.07 4.32 4.32 Total: -1.00 -28.66 286.36 -7.02 -35.69 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -3.67 Total: 9.09 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -1.58 Total: -17.35 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.64 Total: -41.87 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.17 Total: -6.90 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.48 Total: -2.75 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.66 -7.02 -35.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279788.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.737 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds