Wall clock time and date at job start Mon Mar 30 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35924 * 116.99925 * 2 1 4 4 C 1.38860 * 120.05631 * 270.02145 * 3 2 1 5 5 Cl 1.73601 * 120.04059 * 359.97438 * 4 3 2 6 6 C 1.38213 * 119.92134 * 179.97438 * 4 3 2 7 7 C 1.38286 * 120.04594 * 359.97062 * 6 4 3 8 8 C 1.38241 * 120.11299 * 359.77429 * 7 6 4 9 9 C 1.38188 * 120.07951 * 0.50292 * 8 7 6 10 10 C 1.50704 * 120.02299 * 179.74144 * 9 8 7 11 11 H 1.08997 * 109.46902 * 179.72927 * 10 9 8 12 12 C 1.50702 * 109.46652 * 59.72935 * 10 9 8 13 13 H 1.08000 * 120.00227 * 326.48154 * 12 10 9 14 14 C 1.37878 * 119.99586 * 146.47814 * 12 10 9 15 15 N 1.31510 * 120.00420 * 359.93283 * 14 12 10 16 16 Si 1.86802 * 119.99877 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47068 * 269.99876 * 16 14 12 18 18 H 1.48504 * 109.47202 * 30.00167 * 16 14 12 19 19 H 1.48508 * 109.47203 * 149.99538 * 16 14 12 20 20 C 1.53000 * 109.47307 * 299.73386 * 10 9 8 21 21 N 1.46892 * 109.46906 * 185.25678 * 20 10 9 22 22 H 1.09003 * 109.46830 * 60.00474 * 1 2 3 23 23 H 1.09002 * 109.47156 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47190 * 300.00270 * 1 2 3 25 25 H 1.07998 * 119.97635 * 179.97438 * 6 4 3 26 26 H 1.07995 * 119.94304 * 180.02562 * 7 6 4 27 27 H 1.08008 * 119.95636 * 180.27536 * 8 7 6 28 28 H 0.97003 * 120.00163 * 357.06447 * 15 14 12 29 29 H 1.09000 * 109.46912 * 305.25345 * 20 10 9 30 30 H 1.09004 * 109.47004 * 65.25419 * 20 10 9 31 31 H 1.00898 * 111.00355 * 63.71456 * 21 20 10 32 32 H 1.00908 * 110.99912 * 187.66950 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3614 1.8310 -1.2019 5 17 1.9686 1.0598 -2.7068 6 6 2.9884 3.0627 -1.1986 7 6 3.3008 3.6775 0.0000 8 6 2.9829 3.0642 1.1975 9 6 2.3612 1.8301 1.2001 10 6 2.0204 1.1601 2.5063 11 1 1.5343 0.2049 2.3086 12 6 1.0896 2.0437 3.2961 13 1 1.1787 3.1180 3.2298 14 6 0.1240 1.4806 4.1033 15 7 0.0145 0.1725 4.1830 16 14 -1.0294 2.5758 5.0829 17 1 -0.4339 2.8567 6.4140 18 1 -1.2375 3.8529 4.3542 19 1 -2.3340 1.8884 5.2593 20 6 3.3020 0.9240 3.3079 21 7 2.9863 0.1597 4.5220 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 3.2344 3.5455 -2.1329 26 1 3.7903 4.6401 0.0006 27 1 3.2241 3.5487 2.1323 28 1 0.5845 -0.3958 3.6417 29 1 4.0126 0.3636 2.7003 30 1 3.7388 1.8833 3.5857 31 1 2.6362 -0.7579 4.2908 32 1 3.7897 0.0978 5.1295 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279788.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:41 Heat of formation + Delta-G solvation = -41.871582 kcal Electronic energy + Delta-G solvation = -17252.684323 eV Core-core repulsion = 14431.434071 eV Total energy + Delta-G solvation = -2821.250252 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.13210 -38.29325 -37.70056 -36.83749 -33.82265 -32.59415 -31.09930 -28.84231 -27.60743 -25.73907 -24.10799 -23.06625 -21.74605 -18.87648 -18.55431 -17.51415 -17.07676 -16.53558 -16.30118 -15.63590 -15.39771 -15.32600 -14.91599 -14.74223 -14.13413 -13.77005 -13.57494 -13.25409 -12.92920 -12.67146 -12.58357 -12.36948 -12.13231 -11.94829 -11.92466 -11.43515 -10.86073 -10.56090 -10.29543 -9.57291 -9.50477 -9.17437 -8.31852 -5.99126 0.11679 0.33260 1.11780 1.59112 1.66884 1.81269 2.45232 2.69790 3.00486 3.48344 3.76279 4.01781 4.16063 4.33324 4.37362 4.43781 4.44980 4.50564 4.57001 4.61259 4.74702 5.00779 5.08141 5.24739 5.27560 5.47679 5.75172 5.78420 6.21547 6.36515 6.48803 6.61064 6.83322 6.91827 7.77448 9.08226 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.007595 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.587996 B = 3685.592924 C = 3860.396592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.342 6.342 3 C 0.067 3.933 4 C -0.062 4.062 5 Cl -0.064 7.064 6 C -0.117 4.117 7 C -0.102 4.102 8 C -0.110 4.110 9 C -0.064 4.064 10 C 0.064 3.936 11 H 0.027 0.973 12 C -0.582 4.582 13 H 0.035 0.965 14 C -0.004 4.004 15 N -0.917 5.917 16 Si 1.103 2.897 17 H -0.284 1.284 18 H -0.281 1.281 19 H -0.290 1.290 20 C 0.090 3.910 21 N -0.831 5.831 22 H 0.054 0.946 23 H 0.106 0.894 24 H 0.027 0.973 25 H 0.163 0.837 26 H 0.167 0.833 27 H 0.127 0.873 28 H 0.261 0.739 29 H -0.008 1.008 30 H 0.055 0.945 31 H 0.330 0.670 32 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.461 4.414 -9.918 12.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.259 6.259 3 C 0.023 3.977 4 C -0.089 4.089 5 Cl -0.035 7.035 6 C -0.135 4.135 7 C -0.120 4.120 8 C -0.129 4.129 9 C -0.066 4.066 10 C 0.045 3.955 11 H 0.045 0.955 12 C -0.620 4.620 13 H 0.054 0.946 14 C -0.206 4.206 15 N -0.554 5.554 16 Si 0.929 3.071 17 H -0.210 1.210 18 H -0.206 1.206 19 H -0.216 1.216 20 C -0.041 4.041 21 N -0.360 5.360 22 H 0.072 0.928 23 H 0.124 0.876 24 H 0.046 0.954 25 H 0.181 0.819 26 H 0.185 0.815 27 H 0.145 0.855 28 H 0.073 0.927 29 H 0.010 0.990 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.729 4.706 -8.820 10.669 hybrid contribution 1.671 -0.875 -1.293 2.287 sum 5.400 3.831 -10.112 12.087 Atomic orbital electron populations 1.22942 0.78210 1.03742 1.00057 1.85927 1.20739 1.25035 1.94224 1.18553 1.00279 0.87653 0.91212 1.21477 1.05520 0.95997 0.85900 1.98320 1.92994 1.81540 1.30680 1.21187 0.99294 0.92572 1.00444 1.21465 0.99139 1.00944 0.90434 1.21186 0.98267 0.93980 0.99439 1.20767 0.95577 0.95152 0.95089 1.17881 0.93596 0.95922 0.88133 0.95459 1.21761 1.18349 0.92521 1.29379 0.94628 1.26513 0.98623 0.98296 0.97130 1.70788 1.41147 1.04145 1.39272 0.83097 0.74658 0.73812 0.75548 1.20999 1.20624 1.21624 1.21830 0.95881 0.96075 0.90304 1.58348 1.37748 1.21536 1.18344 0.92775 0.87560 0.95392 0.81944 0.81509 0.85472 0.92742 0.98977 0.92618 0.85735 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.67 10.88 113.37 1.23 2.91 16 2 O -0.34 -14.24 8.72 -92.70 -0.81 -15.05 16 3 C 0.07 2.71 5.69 22.52 0.13 2.84 16 4 C -0.06 -2.07 6.33 22.41 0.14 -1.93 16 5 Cl -0.06 -1.89 28.51 -2.72 -0.08 -1.97 16 6 C -0.12 -3.20 9.83 22.28 0.22 -2.98 16 7 C -0.10 -2.81 10.04 22.28 0.22 -2.58 16 8 C -0.11 -3.95 8.64 22.26 0.19 -3.76 16 9 C -0.06 -2.73 4.78 -19.77 -0.09 -2.82 16 10 C 0.06 3.08 2.07 -12.28 -0.03 3.05 16 11 H 0.03 1.47 4.90 -2.39 -0.01 1.45 16 12 C -0.58 -31.04 7.87 25.60 0.20 -30.84 16 13 H 0.04 1.92 7.38 -2.91 -0.02 1.89 16 14 C 0.00 -0.21 5.26 84.66 0.45 0.24 16 15 N -0.92 -52.79 13.21 21.45 0.28 -52.50 16 16 Si 1.10 50.51 29.90 68.60 2.05 52.56 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 20 C 0.09 3.95 5.88 86.30 0.51 4.46 16 21 N -0.83 -35.81 8.43 -186.73 -1.57 -37.39 16 22 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.11 3.47 8.14 -2.39 -0.02 3.46 16 24 H 0.03 1.23 8.11 -2.39 -0.02 1.21 16 25 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 26 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 27 H 0.13 4.52 7.57 -2.91 -0.02 4.50 16 28 H 0.26 15.11 5.47 -92.71 -0.51 14.60 16 29 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.06 2.37 7.60 -2.38 -0.02 2.35 16 31 H 0.33 14.50 8.35 -89.70 -0.75 13.76 16 32 H 0.33 12.06 9.08 -89.69 -0.81 11.25 16 Total: -1.00 -62.29 286.36 2.90 -59.39 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -0.15 Total: 26.40 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 3.17 Total: -31.44 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -1.29 Total: -89.89 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.81 Total: -15.05 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.05 Total: 52.56 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.08 Total: -1.97 kcal Total: -62.29 2.90 -59.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279788.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.518 kcal (2) G-P(sol) polarization free energy of solvation -62.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds