Wall clock time and date at job start Mon Mar 30 2020 06:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35918 * 116.99725 * 2 1 4 4 C 1.38856 * 120.06045 * 270.01652 * 3 2 1 5 5 Cl 1.73608 * 120.03489 * 359.95863 * 4 3 2 6 6 C 1.38214 * 119.92596 * 179.97438 * 4 3 2 7 7 C 1.38284 * 120.04206 * 359.97438 * 6 4 3 8 8 C 1.38239 * 120.12021 * 0.02562 * 7 6 4 9 9 C 1.38195 * 120.07397 * 359.97438 * 8 7 6 10 10 C 1.50696 * 120.01680 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.46861 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47379 * 299.99678 * 10 9 8 13 13 H 1.08000 * 119.99970 * 0.02562 * 12 10 9 14 14 C 1.37880 * 120.00079 * 180.02562 * 12 10 9 15 15 N 1.31512 * 119.99727 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99954 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47233 * 59.99728 * 16 14 12 18 18 H 1.48504 * 109.47073 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46853 * 299.99593 * 16 14 12 20 20 C 1.52995 * 109.47339 * 60.00213 * 10 9 8 21 21 N 1.46895 * 109.47432 * 64.99715 * 20 10 9 22 22 H 1.08996 * 109.47348 * 300.00341 * 1 2 3 23 23 H 1.09004 * 109.46934 * 60.00637 * 1 2 3 24 24 H 1.09003 * 109.47011 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.97763 * 180.02562 * 6 4 3 26 26 H 1.08005 * 119.93880 * 180.02562 * 7 6 4 27 27 H 1.08001 * 119.96185 * 180.27516 * 8 7 6 28 28 H 0.97005 * 119.99618 * 179.97438 * 15 14 12 29 29 H 1.09001 * 109.47622 * 184.99647 * 20 10 9 30 30 H 1.09002 * 109.47189 * 304.99912 * 20 10 9 31 31 H 1.00902 * 111.00283 * 180.02562 * 21 20 10 32 32 H 1.00898 * 110.99851 * 303.95644 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 2.3615 1.8310 -1.2018 5 17 1.9691 1.0595 -2.7067 6 6 2.9884 3.0627 -1.1985 7 6 3.3007 3.6774 0.0001 8 6 2.9876 3.0619 1.1977 9 6 2.3607 1.8303 1.2001 10 6 2.0204 1.1602 2.5063 11 1 1.5344 0.2047 2.3086 12 6 3.2830 0.9273 3.2954 13 1 4.2365 1.2342 2.8916 14 6 3.2209 0.3224 4.5328 15 7 2.0599 -0.0518 5.0243 16 14 4.7859 0.0343 5.5112 17 1 5.4477 1.3360 5.7810 18 1 4.4506 -0.6273 6.7978 19 1 5.7035 -0.8355 4.7323 20 6 1.0756 2.0571 3.3087 21 7 -0.2013 2.1867 2.5941 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 3.2338 3.5459 -2.1328 26 1 3.7903 4.6402 0.0007 27 1 3.2287 3.5463 2.1323 28 1 2.0162 -0.4777 5.8947 29 1 0.8999 1.6147 4.2892 30 1 1.5256 3.0424 3.4300 31 1 -0.8429 2.7752 3.1040 32 1 -0.0580 2.5346 1.6579 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279790.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:44 Heat of formation + Delta-G solvation = -41.802943 kcal Electronic energy + Delta-G solvation = -17251.814081 eV Core-core repulsion = 14430.566806 eV Total energy + Delta-G solvation = -2821.247275 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09371 -38.18944 -37.62179 -36.64743 -34.16003 -32.35261 -31.01718 -29.17497 -27.59056 -25.88078 -24.13920 -23.04162 -21.26750 -18.69811 -18.49128 -17.34706 -16.98107 -16.63176 -16.45207 -16.04330 -15.38116 -15.18553 -14.77912 -14.54273 -14.06637 -13.79764 -13.41641 -12.95348 -12.88589 -12.76027 -12.50132 -12.35645 -12.21184 -12.03933 -11.90107 -11.52545 -11.20889 -10.67216 -10.48299 -9.50830 -9.45752 -9.31086 -8.09149 -6.23482 0.18799 0.38669 1.18674 1.42103 1.43961 1.51022 2.41961 2.59359 3.04144 3.17151 3.94005 4.03273 4.18681 4.42081 4.43361 4.54170 4.55182 4.66338 4.71311 4.95868 5.02155 5.07402 5.26952 5.39389 5.48048 5.61992 5.82264 5.95412 6.02409 6.27626 6.53733 6.64690 6.74985 6.90360 7.43793 8.94185 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.024321 B = 0.007363 C = 0.006979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.006577 B = 3801.656367 C = 4010.933701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.346 6.346 3 C 0.080 3.920 4 C -0.065 4.065 5 Cl -0.066 7.066 6 C -0.114 4.114 7 C -0.105 4.105 8 C -0.112 4.112 9 C -0.067 4.067 10 C 0.090 3.910 11 H 0.016 0.984 12 C -0.527 4.527 13 H 0.051 0.949 14 C 0.019 3.981 15 N -0.909 5.909 16 Si 0.952 3.048 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.278 1.278 20 C 0.082 3.918 21 N -0.847 5.847 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.097 0.903 25 H 0.162 0.838 26 H 0.165 0.835 27 H 0.125 0.875 28 H 0.262 0.738 29 H 0.075 0.925 30 H 0.002 0.998 31 H 0.338 0.662 32 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 7.760 -10.787 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.036 3.964 4 C -0.092 4.092 5 Cl -0.037 7.037 6 C -0.132 4.132 7 C -0.123 4.123 8 C -0.130 4.130 9 C -0.068 4.068 10 C 0.071 3.929 11 H 0.034 0.966 12 C -0.565 4.565 13 H 0.069 0.931 14 C -0.181 4.181 15 N -0.548 5.548 16 Si 0.777 3.223 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.204 1.204 20 C -0.049 4.049 21 N -0.376 5.376 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.116 0.884 25 H 0.179 0.821 26 H 0.182 0.818 27 H 0.143 0.857 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.020 0.980 31 H 0.151 0.849 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.555 6.628 -10.651 12.641 hybrid contribution 0.721 0.458 0.671 1.086 sum -0.834 7.087 -9.981 12.269 Atomic orbital electron populations 1.23193 0.77813 1.03930 1.01565 1.85977 1.21277 1.24877 1.94223 1.18521 0.99670 0.87240 0.90986 1.21489 1.05777 0.95972 0.85922 1.98320 1.92976 1.81608 1.30786 1.21165 0.99104 0.92638 1.00322 1.21423 0.99322 1.01086 0.90436 1.21204 0.97950 0.94526 0.99312 1.20752 0.96468 0.94418 0.95166 1.17569 0.93994 0.93723 0.87566 0.96617 1.21323 0.93040 1.39664 1.02502 0.93071 1.25676 0.98840 0.95040 0.98543 1.70006 1.25143 1.40944 1.18681 0.85711 0.80142 0.78610 0.77806 1.19172 1.20872 1.20364 1.21754 0.88080 0.95682 0.99362 1.58833 1.14082 1.58546 1.06125 0.92028 0.92920 0.88430 0.82083 0.81757 0.85710 0.92903 0.90644 0.97982 0.84949 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 10.88 113.37 1.23 2.22 16 2 O -0.35 -14.41 8.72 -92.63 -0.81 -15.21 16 3 C 0.08 3.17 5.69 22.52 0.13 3.30 16 4 C -0.06 -2.12 6.33 22.41 0.14 -1.97 16 5 Cl -0.07 -1.91 28.51 -2.72 -0.08 -1.99 16 6 C -0.11 -3.05 9.83 22.28 0.22 -2.83 16 7 C -0.10 -2.83 10.04 22.28 0.22 -2.61 16 8 C -0.11 -3.95 8.65 22.26 0.19 -3.76 16 9 C -0.07 -2.81 3.78 -19.77 -0.07 -2.88 16 10 C 0.09 4.48 2.12 -12.29 -0.03 4.45 16 11 H 0.02 0.90 6.75 -2.38 -0.02 0.88 16 12 C -0.53 -28.67 8.24 25.60 0.21 -28.46 16 13 H 0.05 2.77 7.60 -2.91 -0.02 2.75 16 14 C 0.02 1.01 5.29 84.66 0.45 1.46 16 15 N -0.91 -51.76 11.30 21.45 0.24 -51.52 16 16 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 20 C 0.08 3.74 5.98 86.30 0.52 4.26 16 21 N -0.85 -31.82 8.34 -186.73 -1.56 -33.37 16 22 H 0.06 2.26 6.29 -2.39 -0.02 2.24 16 23 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.10 2.98 8.14 -2.39 -0.02 2.97 16 25 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 26 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 27 H 0.12 4.48 7.54 -2.91 -0.02 4.45 16 28 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 29 H 0.08 4.00 5.96 -2.39 -0.01 3.98 16 30 H 0.00 0.09 7.22 -2.39 -0.02 0.07 16 31 H 0.34 10.88 9.08 -89.69 -0.81 10.06 16 32 H 0.33 11.46 7.65 -89.70 -0.69 10.77 16 Total: -1.00 -61.60 283.34 2.70 -58.91 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -0.34 Total: 24.70 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 3.21 Total: -26.83 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -1.31 Total: -84.89 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.81 Total: -15.21 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -61.60 2.70 -58.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279790.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.102 kcal (2) G-P(sol) polarization free energy of solvation -61.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds