Wall clock time and date at job start Mon Mar 30 2020 06:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35921 * 116.99745 * 2 1 4 4 C 1.38707 * 120.06194 * 359.97438 * 3 2 1 5 5 C 1.38153 * 119.96080 * 180.02562 * 4 3 2 6 6 C 1.38272 * 120.07351 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94300 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47664 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47060 * 299.98397 * 7 6 5 10 10 H 1.08002 * 120.00248 * 35.03389 * 9 7 6 11 11 C 1.37879 * 119.99582 * 215.03914 * 9 7 6 12 12 N 1.31515 * 119.99774 * 184.78586 * 11 9 7 13 13 Si 1.86797 * 120.00024 * 4.78240 * 11 9 7 14 14 H 1.48494 * 109.47347 * 84.85949 * 13 11 9 15 15 H 1.48504 * 109.47081 * 204.85836 * 13 11 9 16 16 H 1.48497 * 109.47534 * 324.85611 * 13 11 9 17 17 C 1.53006 * 109.46448 * 59.98100 * 7 6 5 18 18 N 1.46894 * 109.47322 * 65.27261 * 17 7 6 19 19 C 1.38254 * 120.12148 * 359.95459 * 6 5 4 20 20 C 1.38254 * 120.03770 * 0.04460 * 19 6 5 21 21 Cl 1.73599 * 120.03261 * 179.97438 * 20 19 6 22 22 H 1.08996 * 109.47693 * 300.00101 * 1 2 3 23 23 H 1.09003 * 109.47282 * 60.00259 * 1 2 3 24 24 H 1.09004 * 109.47340 * 180.02562 * 1 2 3 25 25 H 1.08007 * 120.02292 * 359.74927 * 4 3 2 26 26 H 1.07996 * 119.96274 * 179.97438 * 5 4 3 27 27 H 0.97001 * 119.99841 * 179.97438 * 12 11 9 28 28 H 1.09004 * 109.46490 * 185.27239 * 17 7 6 29 29 H 1.09004 * 109.47201 * 305.26613 * 17 7 6 30 30 H 1.00901 * 111.00259 * 56.04363 * 18 17 7 31 31 H 1.00904 * 110.99962 * 179.97438 * 18 17 7 32 32 H 1.07999 * 119.97540 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2918 2.3752 -0.0005 5 6 1.9211 3.6050 -0.0011 6 6 3.3020 3.6768 -0.0016 7 6 3.9854 5.0200 -0.0028 8 1 5.0661 4.8779 -0.0026 9 6 3.5799 5.7888 -1.2338 10 1 2.5790 5.6896 -1.6272 11 6 4.4869 6.6189 -1.8580 12 7 4.1072 7.3612 -2.8750 13 14 6.2548 6.6890 -1.2590 14 1 7.0348 5.5937 -1.8890 15 1 6.8513 7.9977 -1.6291 16 1 6.2839 6.5316 0.2173 17 6 3.5738 5.8025 1.2459 18 7 4.0793 5.1166 2.4425 19 6 4.0569 2.5186 -0.0007 20 6 3.4321 1.2853 -0.0001 21 17 4.3802 -0.1690 0.0004 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.2131 2.3202 -0.0050 26 1 1.3339 4.5114 -0.0019 27 1 4.7451 7.9454 -3.3139 28 1 3.9927 6.8078 1.1991 29 1 2.4866 5.8639 1.2943 30 1 5.0790 4.9898 2.3914 31 1 3.8207 5.6145 3.2811 32 1 5.1353 2.5774 -0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261285628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:49 Heat of formation + Delta-G solvation = -27.390809 kcal Electronic energy + Delta-G solvation = -16704.381421 eV Core-core repulsion = 13883.759102 eV Total energy + Delta-G solvation = -2820.622318 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.77367 -37.61084 -36.09107 -34.76282 -32.46810 -30.63502 -30.35623 -28.14817 -26.57129 -23.75941 -22.56042 -21.81206 -19.56415 -17.87402 -17.18213 -15.90156 -15.54202 -15.43859 -15.02687 -14.32132 -13.74659 -13.64649 -13.55318 -13.39373 -12.88716 -12.52585 -12.36495 -11.74037 -11.46738 -11.21703 -11.20117 -10.90242 -10.72370 -10.52886 -10.28138 -9.92119 -9.83446 -9.35360 -8.66986 -8.31411 -8.04709 -7.42882 -6.20918 -4.21738 1.74176 1.96697 2.63213 3.18901 3.25967 3.28547 3.50619 4.26287 4.29711 5.04658 5.10073 5.21097 5.25248 5.39792 5.50764 5.53584 5.73577 5.89643 5.99423 6.10695 6.31911 6.41280 6.62551 6.68170 6.84478 7.02132 7.19315 7.41133 7.50264 7.66913 7.80691 7.99251 8.37803 8.84397 9.40139 10.91572 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023497 B = 0.006711 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.359015 B = 4171.315785 C = 4394.715718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.104 3.896 4 C -0.196 4.196 5 C -0.065 4.065 6 C -0.026 4.026 7 C 0.053 3.947 8 H 0.039 0.961 9 C -0.511 4.511 10 H 0.079 0.921 11 C 0.075 3.925 12 N -0.892 5.892 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.288 1.288 16 H -0.268 1.268 17 C 0.068 3.932 18 N -0.854 5.854 19 C -0.083 4.083 20 C -0.061 4.061 21 Cl -0.081 7.081 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.266 0.734 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.331 0.669 31 H 0.326 0.674 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 -9.776 7.633 12.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.059 3.941 4 C -0.215 4.215 5 C -0.084 4.084 6 C -0.027 4.027 7 C 0.033 3.967 8 H 0.057 0.943 9 C -0.549 4.549 10 H 0.097 0.903 11 C -0.128 4.128 12 N -0.529 5.529 13 Si 0.704 3.296 14 H -0.199 1.199 15 H -0.214 1.214 16 H -0.193 1.193 17 C -0.063 4.063 18 N -0.382 5.382 19 C -0.102 4.102 20 C -0.088 4.088 21 Cl -0.053 7.053 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.113 0.887 25 H 0.144 0.856 26 H 0.145 0.855 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.843 -10.554 7.234 13.359 hybrid contribution 1.325 1.077 0.278 1.730 sum -2.518 -9.477 7.512 12.352 Atomic orbital electron populations 1.22974 0.79049 1.03294 1.01236 1.86082 1.20730 1.26593 1.89372 1.18462 0.90309 0.84661 1.00678 1.21079 0.99376 0.91922 1.09098 1.20854 0.94666 0.96484 0.96353 1.19993 0.93140 0.95319 0.94239 1.18287 0.95383 0.88870 0.94115 0.94317 1.20905 1.00656 1.24506 1.08828 0.90286 1.25057 0.98508 0.94690 0.94569 1.69884 1.35257 1.25658 1.22133 0.86880 0.85596 0.77651 0.79493 1.19858 1.21448 1.19310 1.22278 0.99550 0.95030 0.89422 1.58942 1.18164 1.56326 1.04760 1.20762 1.00049 0.89382 0.99968 1.20047 0.88283 0.87817 1.12675 1.98308 1.72207 1.37397 1.97363 0.92911 0.92818 0.88742 0.85613 0.85483 0.92411 0.95879 0.91747 0.85785 0.86352 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.32 16 2 O -0.31 -4.90 9.96 -19.49 -0.19 -5.09 16 3 C 0.10 1.81 6.68 -39.20 -0.26 1.55 16 4 C -0.20 -3.27 9.04 -39.44 -0.36 -3.63 16 5 C -0.07 -1.23 8.53 -39.60 -0.34 -1.57 16 6 C -0.03 -0.53 4.51 -104.60 -0.47 -1.00 16 7 C 0.05 1.16 1.75 -92.92 -0.16 1.00 16 8 H 0.04 0.86 5.03 -51.93 -0.26 0.60 16 9 C -0.51 -13.35 8.64 -34.44 -0.30 -13.65 16 10 H 0.08 2.24 7.64 -52.49 -0.40 1.84 16 11 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 12 N -0.89 -26.04 13.96 55.43 0.77 -25.26 16 13 Si 0.88 20.48 26.99 -169.99 -4.59 15.89 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -5.88 6.82 56.52 0.39 -5.50 16 17 C 0.07 1.32 6.05 -3.82 -0.02 1.30 16 18 N -0.85 -14.18 9.35 -10.37 -0.10 -14.27 16 19 C -0.08 -1.60 9.45 -39.57 -0.37 -1.97 16 20 C -0.06 -1.12 6.33 -39.36 -0.25 -1.37 16 21 Cl -0.08 -1.35 28.50 -51.86 -1.48 -2.83 16 22 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 23 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 24 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.13 1.72 6.30 -52.48 -0.33 1.39 16 26 H 0.13 2.34 7.45 -52.49 -0.39 1.95 16 27 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 1.25 7.21 -51.93 -0.37 0.87 16 30 H 0.33 5.30 8.99 -39.29 -0.35 4.95 16 31 H 0.33 4.57 9.08 -39.29 -0.36 4.22 16 32 H 0.13 2.34 7.94 -52.49 -0.42 1.92 16 LS Contribution 285.61 15.07 4.30 4.30 Total: -1.00 -29.19 285.61 -6.60 -35.78 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -3.68 Total: 7.57 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -1.64 Total: -16.09 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.68 Total: -39.54 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.19 Total: -5.09 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.59 Total: 15.89 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -1.48 Total: -2.83 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.19 -6.60 -35.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261285628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.392 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds