Wall clock time and date at job start Mon Mar 30 2020 06:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46498 * 120.00064 * 2 1 4 4 C 1.53005 * 109.46824 * 269.99957 * 3 2 1 5 5 H 1.08993 * 109.47327 * 59.99684 * 4 3 2 6 6 O 1.42906 * 109.46664 * 299.99632 * 4 3 2 7 7 C 1.50697 * 109.46932 * 180.02562 * 4 3 2 8 8 H 1.08003 * 120.00156 * 359.97438 * 7 4 3 9 9 C 1.37877 * 120.00188 * 179.97438 * 7 4 3 10 10 N 1.31514 * 120.00001 * 179.97438 * 9 7 4 11 11 Si 1.86800 * 119.99706 * 0.02562 * 9 7 4 12 12 H 1.48494 * 109.47294 * 89.99845 * 11 9 7 13 13 H 1.48509 * 109.46949 * 210.00006 * 11 9 7 14 14 H 1.48505 * 109.47287 * 329.99448 * 11 9 7 15 15 C 1.39745 * 119.99365 * 179.97438 * 2 1 3 16 16 C 1.38894 * 120.06735 * 0.02562 * 15 2 1 17 17 C 1.38107 * 119.93648 * 180.27867 * 16 15 2 18 18 C 1.38379 * 120.06384 * 359.49049 * 17 16 15 19 19 Cl 1.73595 * 119.94051 * 180.26033 * 18 17 16 20 20 C 1.38388 * 120.12286 * 0.50832 * 18 17 16 21 21 C 1.38112 * 120.05864 * 359.74632 * 20 18 17 22 22 H 1.08997 * 109.46876 * 270.00228 * 1 2 3 23 23 H 1.08994 * 109.46564 * 30.00473 * 1 2 3 24 24 H 1.08999 * 109.46671 * 149.99701 * 1 2 3 25 25 H 1.08995 * 109.46980 * 29.99653 * 3 2 1 26 26 H 1.08994 * 109.46923 * 149.99841 * 3 2 1 27 27 H 0.96692 * 114.00618 * 300.00284 * 6 4 3 28 28 H 0.97005 * 119.99814 * 180.02562 * 10 9 7 29 29 H 1.08002 * 120.02733 * 359.97438 * 16 15 2 30 30 H 1.08004 * 119.96550 * 179.74818 * 17 16 15 31 31 H 1.07997 * 119.96708 * 179.72984 * 20 18 17 32 32 H 1.07996 * 120.02586 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 1 1.5002 1.8406 -1.9564 6 8 3.2250 0.7143 -2.1161 7 6 3.2066 3.0151 -1.4426 8 1 3.4766 3.4828 -0.5073 9 6 3.5519 3.6118 -2.6366 10 7 4.2095 4.7507 -2.6366 11 14 3.0843 2.8032 -4.2543 12 1 1.7485 3.2898 -4.6831 13 1 4.0923 3.1473 -5.2893 14 1 3.0407 1.3294 -4.0767 15 6 2.1637 -1.2103 0.0005 16 6 1.4705 -2.4139 0.0005 17 6 2.1636 -3.6084 0.0069 18 6 3.5474 -3.6070 0.0026 19 17 4.4154 -5.1104 0.0038 20 6 4.2407 -2.4093 0.0026 21 6 3.5527 -1.2118 0.0015 22 1 -0.3633 0.0000 1.0277 23 1 -0.3632 0.8899 -0.5139 24 1 -0.3632 -0.8900 -0.5139 25 1 1.6085 2.0283 0.5138 26 1 3.1499 1.1383 0.5138 27 1 4.0874 0.5458 -1.7126 28 1 4.4521 5.1707 -3.4767 29 1 0.3905 -2.4156 0.0005 30 1 1.6251 -4.5446 0.0110 31 1 5.3206 -2.4111 0.0036 32 1 4.0942 -0.2774 0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261360786.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:19 Heat of formation + Delta-G solvation = -38.082790 kcal Electronic energy + Delta-G solvation = -16800.467286 eV Core-core repulsion = 13979.381329 eV Total energy + Delta-G solvation = -2821.085957 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 5.77 seconds Orbital eigenvalues (eV) -40.65671 -38.46820 -37.25916 -36.15169 -34.42745 -32.09571 -31.29104 -30.08050 -27.98631 -25.66034 -23.63948 -22.68431 -21.41483 -19.53428 -18.51290 -17.02156 -16.75333 -16.70099 -16.47355 -15.87820 -15.23963 -15.07518 -14.86475 -14.49819 -14.34406 -14.01602 -13.64617 -13.04073 -12.96462 -12.85309 -12.67028 -12.47184 -12.40161 -12.13213 -11.97786 -11.47703 -11.13332 -10.83921 -10.58540 -10.11285 -9.86378 -8.36725 -8.03384 -6.50872 0.50654 0.57380 1.36879 1.42279 1.44218 1.73664 2.28898 2.41888 2.91192 3.02404 3.88562 4.00314 4.03503 4.21993 4.37515 4.44629 4.49625 4.58948 4.72484 4.76859 4.92411 4.94289 5.10907 5.24803 5.33659 5.43168 5.47829 5.51361 5.83645 6.06180 6.37101 6.62668 6.64048 7.17171 7.32768 8.77193 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.027283 B = 0.005875 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.016612 B = 4764.943246 C = 5257.863055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.625 5.625 3 C 0.114 3.886 4 C 0.188 3.812 5 H 0.047 0.953 6 O -0.576 6.576 7 C -0.563 4.563 8 H 0.044 0.956 9 C 0.034 3.966 10 N -0.937 5.937 11 Si 0.934 3.066 12 H -0.287 1.287 13 H -0.300 1.300 14 H -0.209 1.209 15 C 0.225 3.775 16 C -0.199 4.199 17 C -0.063 4.063 18 C -0.112 4.112 19 Cl -0.087 7.087 20 C -0.066 4.066 21 C -0.191 4.191 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.361 0.639 28 H 0.266 0.734 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.137 0.863 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.802 -16.611 6.155 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.333 5.333 3 C -0.010 4.010 4 C 0.129 3.871 5 H 0.065 0.935 6 O -0.383 6.383 7 C -0.601 4.601 8 H 0.062 0.938 9 C -0.166 4.166 10 N -0.576 5.576 11 Si 0.759 3.241 12 H -0.214 1.214 13 H -0.228 1.228 14 H -0.131 1.131 15 C 0.120 3.880 16 C -0.221 4.221 17 C -0.082 4.082 18 C -0.141 4.141 19 Cl -0.059 7.059 20 C -0.086 4.086 21 C -0.214 4.214 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.209 0.791 28 H 0.075 0.925 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.315 -16.446 5.699 18.516 hybrid contribution 0.706 0.550 -0.477 1.014 sum -5.609 -15.896 5.222 17.647 Atomic orbital electron populations 1.21803 0.78468 1.03255 1.01990 1.46683 1.05768 1.02674 1.78172 1.21955 0.97070 0.84445 0.97502 1.20000 0.91368 0.85225 0.90527 0.93493 1.86672 1.32817 1.60948 1.57864 1.21789 1.37790 1.07084 0.93481 0.93757 1.25751 0.93302 0.94306 1.03276 1.70072 1.40277 1.18971 1.28312 0.86061 0.76802 0.83262 0.77983 1.21355 1.22755 1.13104 1.18129 0.91580 0.86399 0.91853 1.20788 1.00679 0.89926 1.10724 1.20928 0.91704 0.98774 0.96765 1.20657 0.92677 0.86462 1.14267 1.98316 1.77126 1.32884 1.97561 1.20889 1.00461 0.90188 0.97023 1.20738 0.92709 0.98267 1.09689 0.91795 0.91650 0.90259 0.90205 0.90902 0.79078 0.92498 0.83579 0.83525 0.84470 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.98 10.19 127.77 1.30 3.29 16 2 N -0.63 -18.48 2.95 -722.15 -2.13 -20.61 16 3 C 0.11 3.94 4.94 86.38 0.43 4.37 16 4 C 0.19 8.03 2.58 29.85 0.08 8.11 16 5 H 0.05 2.10 7.57 -2.39 -0.02 2.08 16 6 O -0.58 -24.30 8.77 -148.98 -1.31 -25.60 16 7 C -0.56 -29.85 9.34 25.60 0.24 -29.62 16 8 H 0.04 2.56 7.99 -2.91 -0.02 2.53 16 9 C 0.03 1.90 5.47 84.65 0.46 2.36 16 10 N -0.94 -56.81 13.96 21.45 0.30 -56.51 16 11 Si 0.93 44.54 26.99 68.60 1.85 46.39 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 13 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 14 H -0.21 -9.64 5.31 99.48 0.53 -9.11 16 15 C 0.22 6.55 6.20 38.20 0.24 6.78 16 16 C -0.20 -4.89 9.21 22.40 0.21 -4.69 16 17 C -0.06 -1.46 9.82 22.27 0.22 -1.25 16 18 C -0.11 -2.86 6.32 22.34 0.14 -2.72 16 19 Cl -0.09 -2.02 28.95 -2.72 -0.08 -2.10 16 20 C -0.07 -1.78 9.82 22.28 0.22 -1.56 16 21 C -0.19 -5.64 7.78 22.40 0.17 -5.47 16 22 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.06 1.53 8.07 -2.39 -0.02 1.51 16 24 H 0.08 1.55 6.20 -2.39 -0.01 1.54 16 25 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 26 H 0.07 2.51 6.19 -2.39 -0.01 2.50 16 27 H 0.36 14.00 7.02 -74.06 -0.52 13.48 16 28 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 29 H 0.15 2.90 6.14 -2.91 -0.02 2.89 16 30 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.13 3.82 4.77 -2.91 -0.01 3.80 16 Total: -1.00 -62.70 277.40 2.78 -59.91 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.44 Total: 18.90 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 3.70 Total: -20.38 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -1.83 Total: -77.12 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -1.31 Total: -25.60 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.85 Total: 46.39 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.08 Total: -2.10 kcal Total: -62.70 2.78 -59.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360786.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.831 kcal (2) G-P(sol) polarization free energy of solvation -62.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.77 seconds