Wall clock time and date at job start Mon Mar 30 2020 06:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99761 * 2 1 4 4 H 1.48497 * 109.47230 * 240.00188 * 3 2 1 5 5 H 1.48498 * 109.47287 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47157 * 120.00389 * 3 2 1 7 7 C 1.37875 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00150 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99883 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00183 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47017 * 180.02562 * 11 10 9 13 13 S 1.81403 * 109.47028 * 180.02562 * 12 11 10 14 14 C 1.76201 * 102.99849 * 179.97438 * 13 12 11 15 15 C 1.38890 * 120.08725 * 359.95439 * 14 13 12 16 16 C 1.38129 * 119.94815 * 180.02562 * 15 14 13 17 17 C 1.38295 * 120.11144 * 0.02562 * 16 15 14 18 18 C 1.38298 * 120.17224 * 0.02562 * 17 16 15 19 19 C 1.38258 * 120.05674 * 359.97358 * 18 17 16 20 20 F 1.35106 * 120.05825 * 180.02562 * 19 18 17 21 21 H 0.96996 * 119.99999 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47319 * 60.00423 * 9 7 2 23 23 H 1.08999 * 109.47588 * 300.00806 * 9 7 2 24 24 H 1.00906 * 110.99871 * 56.04467 * 10 9 7 25 25 H 1.09000 * 109.46947 * 60.00338 * 11 10 9 26 26 H 1.08999 * 109.46950 * 300.00110 * 11 10 9 27 27 H 1.09000 * 109.47073 * 60.00309 * 12 11 10 28 28 H 1.08999 * 109.47263 * 299.99811 * 12 11 10 29 29 H 1.08004 * 120.02607 * 0.04536 * 15 14 13 30 30 H 1.07999 * 119.94866 * 180.27536 * 16 15 14 31 31 H 1.07997 * 119.90794 * 179.97438 * 17 16 15 32 32 H 1.08007 * 119.97156 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 6 2.5305 -6.0429 -0.0005 13 16 1.6658 -7.6376 -0.0020 14 6 2.9861 -8.8044 -0.0018 15 6 4.3036 -8.3650 -0.0016 16 6 5.3364 -9.2822 -0.0020 17 6 5.0608 -10.6374 -0.0031 18 6 3.7507 -11.0803 -0.0044 19 6 2.7115 -10.1684 -0.0040 20 9 1.4315 -10.6010 -0.0047 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.8407 -3.5486 0.7809 25 1 0.8810 -4.9812 -0.8914 26 1 0.8803 -4.9817 0.8886 27 1 3.1547 -5.9686 0.8900 28 1 3.1560 -5.9685 -0.8900 29 1 4.5205 -7.3069 -0.0009 30 1 6.3609 -8.9405 0.0026 31 1 5.8709 -11.3516 -0.0038 32 1 3.5391 -12.1394 -0.0056 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308867953.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:45 Heat of formation + Delta-G solvation = -26.654592 kcal Electronic energy + Delta-G solvation = -15316.779189 eV Core-core repulsion = 12510.605291 eV Total energy + Delta-G solvation = -2806.173898 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.079 amu Computer time = 4.39 seconds Orbital eigenvalues (eV) -49.03741 -39.00967 -35.85422 -32.79840 -31.63759 -30.68887 -30.03488 -26.13705 -23.40917 -23.24554 -21.99528 -21.34571 -18.21867 -17.16848 -16.56569 -16.42497 -15.84050 -15.50596 -15.33444 -14.70645 -14.35557 -14.32626 -13.56598 -13.45099 -12.90378 -12.79951 -12.52954 -12.25328 -11.91170 -11.37094 -11.23191 -11.13653 -10.71821 -10.70761 -10.27647 -10.05506 -9.95535 -9.27037 -9.12157 -8.52846 -7.54566 -7.43875 -6.07554 -4.10494 0.79033 0.89554 1.33137 2.32570 3.25499 3.31002 3.35150 3.37901 3.97921 4.39215 4.44781 4.62899 4.90321 4.98121 4.99831 5.00760 5.28243 5.33975 5.47504 5.61654 5.69961 5.73282 5.88012 6.06682 6.09112 6.19223 6.53258 7.14098 7.32547 7.69836 8.04678 8.25354 8.48957 8.97655 9.54559 11.03510 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.048186 B = 0.003322 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.945571 B = 8427.791844 C = 8980.957322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.685 5.685 11 C 0.074 3.926 12 C -0.104 4.104 13 S -0.092 6.092 14 C -0.118 4.118 15 C -0.108 4.108 16 C -0.109 4.109 17 C -0.103 4.103 18 C -0.137 4.137 19 C 0.110 3.890 20 F -0.130 7.130 21 H 0.263 0.737 22 H 0.030 0.970 23 H -0.011 1.011 24 H 0.330 0.670 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.096 -21.027 0.826 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.317 5.317 11 C -0.057 4.057 12 C -0.253 4.253 13 S 0.153 5.847 14 C -0.232 4.232 15 C -0.132 4.132 16 C -0.129 4.129 17 C -0.125 4.125 18 C -0.157 4.157 19 C 0.084 3.916 20 F -0.109 7.109 21 H 0.073 0.927 22 H 0.048 0.952 23 H 0.007 0.993 24 H 0.146 0.854 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.675 -20.947 0.133 22.309 hybrid contribution 1.204 0.976 0.903 1.794 sum 8.879 -19.971 1.036 21.880 Atomic orbital electron populations 1.69952 1.06111 1.27055 1.50487 1.24998 0.94901 0.99433 0.95202 0.86510 0.79404 0.82514 0.78672 1.20097 1.21283 1.20230 1.21115 0.93496 0.90121 1.50927 0.91928 1.19582 0.90525 0.87005 0.96084 1.60723 1.21370 1.00609 1.48961 1.21543 0.94065 0.88781 1.01310 1.23827 1.02179 0.93276 1.05987 1.85791 1.09340 0.98433 1.91132 1.22007 0.98635 0.95589 1.06948 1.21199 0.90442 1.00881 1.00680 1.21154 0.99318 0.92936 0.99509 1.21026 0.95742 0.95958 0.99729 1.21067 0.92068 0.99581 1.03027 1.17123 0.79305 0.90616 1.04569 1.91523 1.35667 1.89943 1.93744 0.92736 0.95175 0.99317 0.85390 0.90584 0.95120 0.89537 0.88418 0.84514 0.84973 0.84885 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.56 9.32 -34.44 -0.32 -14.88 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.19 5.07 5.44 -4.98 -0.03 5.04 16 10 N -0.69 -14.27 6.49 -115.06 -0.75 -15.02 16 11 C 0.07 1.29 5.69 -3.82 -0.02 1.27 16 12 C -0.10 -1.44 4.59 37.16 0.17 -1.27 16 13 S -0.09 -1.29 21.53 -107.50 -2.31 -3.61 16 14 C -0.12 -1.48 6.11 -39.01 -0.24 -1.72 16 15 C -0.11 -1.15 9.36 -39.38 -0.37 -1.52 16 16 C -0.11 -0.93 10.04 -39.60 -0.40 -1.33 16 17 C -0.10 -0.81 10.04 -39.54 -0.40 -1.21 16 18 C -0.14 -1.27 10.02 -39.55 -0.40 -1.66 16 19 C 0.11 1.33 7.28 -39.24 -0.29 1.04 16 20 F -0.13 -1.74 16.76 2.25 0.04 -1.70 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 23 H -0.01 -0.30 8.14 -51.93 -0.42 -0.73 16 24 H 0.33 6.41 8.72 -39.29 -0.34 6.07 16 25 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 1.09 7.75 -51.92 -0.40 0.68 16 28 H 0.10 1.31 7.75 -51.92 -0.40 0.91 16 29 H 0.14 1.35 5.88 -52.48 -0.31 1.05 16 30 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 32 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 295.24 15.07 4.45 4.45 Total: -1.00 -30.44 295.24 -9.20 -39.64 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.96 Total: 0.48 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -2.38 Total: -14.73 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: -0.01 Total: -41.02 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.31 Total: -3.61 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.44 -9.20 -39.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308867953.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.988 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.39 seconds