Wall clock time and date at job start Mon Mar 30 2020 06:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47293 * 270.00011 * 3 2 1 5 5 H 1.48493 * 109.47148 * 30.00152 * 3 2 1 6 6 H 1.48502 * 109.47034 * 150.00087 * 3 2 1 7 7 C 1.38813 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99762 * 359.97438 * 7 2 1 9 9 N 1.36929 * 119.99898 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00077 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47392 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47449 * 179.97438 * 11 10 9 13 13 S 1.81398 * 109.47454 * 179.97438 * 12 11 10 14 14 C 1.76207 * 102.99973 * 180.02562 * 13 12 11 15 15 C 1.38937 * 120.05372 * 0.27382 * 14 13 12 16 16 C 1.38096 * 119.94358 * 180.21462 * 15 14 13 17 17 C 1.38485 * 120.05364 * 359.51114 * 16 15 14 18 18 F 1.35096 * 119.94411 * 180.27941 * 17 16 15 19 19 C 1.38481 * 120.10818 * 0.25806 * 17 16 15 20 20 C 1.38099 * 120.05711 * 359.97438 * 19 17 16 21 21 H 0.97005 * 119.99908 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00186 * 359.97438 * 9 7 2 23 23 H 1.09008 * 109.47081 * 59.99593 * 10 9 7 24 24 H 1.09000 * 109.46899 * 300.00179 * 10 9 7 25 25 H 1.09007 * 109.47423 * 60.00304 * 11 10 9 26 26 H 1.09000 * 109.47558 * 300.00160 * 11 10 9 27 27 H 1.09008 * 109.46898 * 60.00055 * 12 11 10 28 28 H 1.09000 * 109.47026 * 300.00675 * 12 11 10 29 29 H 1.07998 * 120.02672 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.97635 * 179.79606 * 16 15 14 31 31 H 1.08005 * 119.96937 * 179.97438 * 19 17 16 32 32 H 1.07997 * 120.02561 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6162 -2.1913 0.0000 12 6 6.3813 -3.5163 0.0006 13 16 8.1648 -3.1849 -0.0001 14 6 8.8681 -4.8005 0.0000 15 6 8.0433 -5.9185 -0.0052 16 6 8.5970 -7.1836 -0.0007 17 6 9.9732 -7.3384 -0.0012 18 9 10.5124 -8.5771 -0.0024 19 6 10.7974 -6.2256 -0.0008 20 6 10.2485 -4.9583 -0.0005 21 1 -0.4850 0.8401 -0.0004 22 1 3.8646 -0.3621 0.0004 23 1 3.8491 -3.0423 -0.8902 24 1 3.8484 -3.0426 0.8897 25 1 5.8797 -1.6198 0.8900 26 1 5.8797 -1.6197 -0.8900 27 1 6.1180 -4.0883 -0.8892 28 1 6.1178 -4.0876 0.8908 29 1 6.9700 -5.7983 -0.0089 30 1 7.9563 -8.0531 -0.0013 31 1 11.8703 -6.3489 -0.0008 32 1 10.8918 -4.0908 -0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389952959.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:40 Heat of formation + Delta-G solvation = -34.837069 kcal Electronic energy + Delta-G solvation = -15205.473227 eV Core-core repulsion = 12398.944511 eV Total energy + Delta-G solvation = -2806.528716 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.079 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.91509 -39.79172 -37.49911 -34.73692 -32.79504 -32.12150 -31.55885 -27.78282 -24.67423 -23.83753 -23.69054 -22.53671 -19.70003 -18.89636 -18.28340 -17.34093 -16.71461 -16.64699 -16.52420 -16.27589 -15.50212 -15.33558 -14.82343 -14.61293 -14.36242 -14.33939 -13.91158 -13.60799 -13.44294 -12.89552 -12.81549 -12.21279 -12.14563 -12.07212 -11.98938 -11.79288 -11.20158 -10.98954 -10.57926 -10.20144 -9.32938 -8.39442 -8.04432 -5.39017 -0.05305 0.16473 0.43377 1.38117 1.38669 1.42171 1.49594 2.44763 2.47963 3.23849 3.27157 3.48358 3.68265 3.84750 3.88905 4.14524 4.16357 4.23556 4.32122 4.53807 4.60921 4.66385 4.79896 4.85566 5.07283 5.09698 5.14543 5.22665 5.23111 5.73610 5.76769 6.19467 7.06055 7.81639 8.00333 9.16931 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.055625 B = 0.003218 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.252728 B = 8699.402617 C = 9176.905906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.250 1.250 7 C -0.239 4.239 8 H 0.057 0.943 9 N -0.762 5.762 10 C 0.159 3.841 11 C -0.103 4.103 12 C -0.095 4.095 13 S -0.119 6.119 14 C -0.103 4.103 15 C -0.113 4.113 16 C -0.135 4.135 17 C 0.073 3.927 18 F -0.146 7.146 19 C -0.132 4.132 20 C -0.079 4.079 21 H 0.259 0.741 22 H 0.367 0.633 23 H 0.031 0.969 24 H 0.030 0.970 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.145 0.855 30 H 0.153 0.847 31 H 0.161 0.839 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.711 -12.431 0.012 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.257 4.257 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.174 1.174 7 C -0.370 4.370 8 H 0.075 0.925 9 N -0.408 5.408 10 C 0.031 3.969 11 C -0.142 4.142 12 C -0.243 4.243 13 S 0.126 5.874 14 C -0.216 4.216 15 C -0.137 4.137 16 C -0.156 4.156 17 C 0.051 3.949 18 F -0.125 7.125 19 C -0.152 4.152 20 C -0.102 4.102 21 H 0.068 0.932 22 H 0.200 0.800 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.163 0.837 30 H 0.171 0.829 31 H 0.179 0.821 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 25.000 -11.418 0.015 27.484 hybrid contribution -0.724 -0.513 0.000 0.888 sum 24.276 -11.931 0.015 27.049 Atomic orbital electron populations 1.69890 1.07218 1.26842 1.59482 1.25568 0.96182 1.01506 1.02409 0.85370 0.78694 0.79279 0.78229 1.20263 1.22186 1.17406 1.19048 0.82697 0.93598 1.41699 0.92459 1.42721 1.02589 1.04344 1.91120 1.20743 0.89791 0.87523 0.98825 1.21333 0.93367 0.95915 1.03591 1.23579 0.92155 1.01600 1.07016 1.85625 1.04204 1.05585 1.91951 1.22008 0.97442 0.96984 1.05175 1.21285 1.00637 0.91011 1.00766 1.21272 0.93483 0.99011 1.01786 1.17919 0.92270 0.79845 1.04877 1.91486 1.86596 1.40285 1.94126 1.21310 1.01571 0.90649 1.01678 1.20856 0.92591 0.97829 0.98955 0.93236 0.79967 0.95111 0.95209 0.90766 0.90633 0.88005 0.88041 0.83707 0.82893 0.82130 0.82998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.17 13.97 21.65 0.30 -62.86 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.96 45.10 27.74 68.60 1.90 47.00 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.25 -10.52 6.52 99.48 0.65 -9.87 16 7 C -0.24 -13.67 10.47 84.03 0.88 -12.79 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 9 N -0.76 -35.08 5.41 -343.45 -1.86 -36.94 16 10 C 0.16 5.62 6.26 86.38 0.54 6.16 16 11 C -0.10 -2.70 5.34 30.59 0.16 -2.54 16 12 C -0.09 -1.93 4.33 71.98 0.31 -1.62 16 13 S -0.12 -2.43 21.92 -56.49 -1.24 -3.66 16 14 C -0.10 -1.93 6.11 22.60 0.14 -1.79 16 15 C -0.11 -1.97 9.36 22.40 0.21 -1.76 16 16 C -0.14 -2.23 10.02 22.29 0.22 -2.01 16 17 C 0.07 1.27 7.30 22.39 0.16 1.43 16 18 F -0.15 -2.76 17.26 44.97 0.78 -1.98 16 19 C -0.13 -1.96 10.02 22.29 0.22 -1.74 16 20 C -0.08 -1.26 9.79 22.40 0.22 -1.04 16 21 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 22 H 0.37 16.01 5.53 -92.71 -0.51 15.50 16 23 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.10 1.88 7.73 -2.39 -0.02 1.86 16 28 H 0.10 1.88 7.76 -2.39 -0.02 1.86 16 29 H 0.15 2.20 5.88 -2.91 -0.02 2.18 16 30 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -67.32 291.54 3.98 -63.34 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.55 Total: 16.17 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 3.54 Total: -21.08 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -1.55 Total: -99.80 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -1.24 Total: -3.66 kcal Total: -67.32 3.98 -63.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389952959.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.508 kcal (2) G-P(sol) polarization free energy of solvation -67.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds