Wall clock time and date at job start Mon Mar 30 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99782 * 2 1 4 4 H 1.48508 * 109.47223 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47357 * 299.99420 * 3 2 1 6 6 H 1.48496 * 109.47340 * 59.99943 * 3 2 1 7 7 C 1.37878 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00424 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99838 * 0.02562 * 7 2 1 10 10 N 1.46892 * 109.47418 * 179.97438 * 9 7 2 11 11 C 1.46895 * 111.00331 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47570 * 179.97438 * 11 10 9 13 13 S 1.81398 * 109.47454 * 179.97438 * 12 11 10 14 14 C 1.76207 * 102.99973 * 180.02562 * 13 12 11 15 15 C 1.38937 * 120.05372 * 0.27382 * 14 13 12 16 16 C 1.38096 * 119.94358 * 180.21462 * 15 14 13 17 17 C 1.38485 * 120.05364 * 359.51114 * 16 15 14 18 18 F 1.35096 * 119.94411 * 180.27941 * 17 16 15 19 19 C 1.38481 * 120.10818 * 0.25806 * 17 16 15 20 20 C 1.38099 * 120.05711 * 359.97438 * 19 17 16 21 21 H 0.97006 * 120.00483 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.47487 * 59.99673 * 9 7 2 23 23 H 1.09005 * 109.47210 * 300.00157 * 9 7 2 24 24 H 1.00904 * 111.00343 * 303.95417 * 10 9 7 25 25 H 1.09007 * 109.47461 * 60.00254 * 11 10 9 26 26 H 1.09000 * 109.47399 * 300.00185 * 11 10 9 27 27 H 1.09008 * 109.46898 * 59.99935 * 12 11 10 28 28 H 1.09000 * 109.47026 * 300.00555 * 12 11 10 29 29 H 1.07998 * 120.02672 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.97635 * 179.79606 * 16 15 14 31 31 H 1.08005 * 119.96937 * 179.97438 * 19 17 16 32 32 H 1.07997 * 120.02561 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2056 -3.6156 0.0005 11 6 1.5054 -4.9070 0.0011 12 6 2.5303 -6.0430 0.0005 13 16 1.6655 -7.6376 0.0020 14 6 2.9859 -8.8045 0.0018 15 6 4.3036 -8.3642 0.0064 16 6 5.3366 -9.2807 0.0018 17 6 5.0599 -10.6376 0.0027 18 9 6.0722 -11.5322 0.0039 19 6 3.7473 -11.0789 0.0030 20 6 2.7108 -10.1664 0.0028 21 1 -0.4851 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8405 -3.5487 -0.7808 25 1 0.8802 -4.9818 -0.8887 26 1 0.8808 -4.9812 0.8913 27 1 3.1558 -5.9685 0.8901 28 1 3.1546 -5.9686 -0.8899 29 1 4.5199 -7.3061 0.0097 30 1 6.3612 -8.9390 0.0020 31 1 3.5341 -12.1377 0.0034 32 1 1.6873 -10.5111 0.0034 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389961297.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:53 Heat of formation + Delta-G solvation = -29.661324 kcal Electronic energy + Delta-G solvation = -15148.674013 eV Core-core repulsion = 12342.369734 eV Total energy + Delta-G solvation = -2806.304279 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.079 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.11508 -39.03192 -35.87342 -32.81714 -31.59381 -30.84049 -30.02176 -26.15295 -23.54485 -23.03735 -22.09027 -21.37136 -18.16698 -17.45270 -16.57912 -16.41324 -15.82917 -15.43099 -15.27133 -14.71255 -14.57628 -13.94253 -13.72970 -13.56139 -13.24287 -12.99861 -12.57228 -12.12344 -11.83943 -11.40694 -11.26580 -11.15044 -10.75106 -10.66983 -10.31952 -9.97817 -9.74939 -9.46115 -9.25318 -8.54887 -7.53151 -7.44152 -6.09097 -4.11754 0.74080 0.90670 1.35866 2.32185 3.21335 3.27711 3.35112 3.39802 3.99835 4.38314 4.40305 4.54972 4.89097 4.94376 4.98856 5.04387 5.27065 5.40473 5.45910 5.54550 5.61853 5.81625 5.86058 5.90530 6.04980 6.17127 6.51445 7.12462 7.30943 7.69299 8.03152 8.23823 8.47722 8.97005 9.53527 11.02035 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.048750 B = 0.003083 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.222563 B = 9078.553704 C = 9624.991223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.686 5.686 11 C 0.074 3.926 12 C -0.102 4.102 13 S -0.106 6.106 14 C -0.089 4.089 15 C -0.106 4.106 16 C -0.131 4.131 17 C 0.084 3.916 18 F -0.141 7.141 19 C -0.135 4.135 20 C -0.076 4.076 21 H 0.262 0.738 22 H -0.011 1.011 23 H 0.030 0.970 24 H 0.330 0.670 25 H 0.030 0.970 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 -20.643 -0.821 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.317 5.317 11 C -0.057 4.057 12 C -0.251 4.251 13 S 0.139 5.861 14 C -0.203 4.203 15 C -0.130 4.130 16 C -0.152 4.152 17 C 0.062 3.938 18 F -0.120 7.120 19 C -0.156 4.156 20 C -0.100 4.100 21 H 0.071 0.929 22 H 0.007 0.993 23 H 0.048 0.952 24 H 0.146 0.854 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.690 -20.585 -0.128 21.357 hybrid contribution 1.620 0.916 -0.901 2.068 sum 7.310 -19.668 -1.028 21.008 Atomic orbital electron populations 1.69966 1.06113 1.26835 1.50683 1.24998 0.94898 0.99459 0.95219 0.86407 0.80031 0.83196 0.77568 1.19621 1.21042 1.20922 1.21190 0.93572 0.90091 1.50645 0.91826 1.19592 0.90530 0.87051 0.96076 1.60717 1.21371 1.00640 1.48992 1.21552 0.94071 0.88824 1.01266 1.23810 1.02087 0.93209 1.05993 1.85582 1.10315 0.98789 1.91390 1.21928 0.96904 0.97392 1.04053 1.21166 0.90860 1.00384 1.00586 1.21069 1.00656 0.91161 1.02305 1.17682 0.84688 0.86827 1.04574 1.91494 1.59048 1.67413 1.94056 1.21055 0.90765 1.00877 1.02863 1.20631 0.99484 0.90361 0.99502 0.92851 0.99319 0.95172 0.85371 0.95147 0.90607 0.88447 0.89564 0.84431 0.84396 0.84338 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.40 9.32 -34.44 -0.32 -14.72 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.19 4.99 5.44 -4.98 -0.03 4.96 16 10 N -0.69 -14.06 6.49 -115.06 -0.75 -14.80 16 11 C 0.07 1.24 5.69 -3.83 -0.02 1.22 16 12 C -0.10 -1.34 4.59 37.16 0.17 -1.17 16 13 S -0.11 -1.30 21.92 -107.50 -2.36 -3.66 16 14 C -0.09 -1.00 6.11 -39.06 -0.24 -1.24 16 15 C -0.11 -1.12 9.36 -39.37 -0.37 -1.48 16 16 C -0.13 -1.29 10.02 -39.54 -0.40 -1.69 16 17 C 0.08 0.86 7.30 -39.40 -0.29 0.57 16 18 F -0.14 -1.50 17.26 2.25 0.04 -1.47 16 19 C -0.14 -1.23 10.02 -39.54 -0.40 -1.63 16 20 C -0.08 -0.74 9.79 -39.37 -0.39 -1.12 16 21 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 22 H -0.01 -0.30 8.14 -51.93 -0.42 -0.72 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.33 6.33 8.72 -39.29 -0.34 5.99 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.10 1.26 7.73 -51.92 -0.40 0.86 16 28 H 0.09 1.04 7.76 -51.92 -0.40 0.64 16 29 H 0.14 1.35 5.88 -52.49 -0.31 1.04 16 30 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 295.88 15.07 4.46 4.46 Total: -1.00 -29.60 295.88 -9.22 -38.82 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -3.96 Total: 0.90 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -2.37 Total: -14.82 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.01 Total: -40.60 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -2.36 Total: -3.66 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.60 -9.22 -38.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389961297.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.156 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds