Wall clock time and date at job start Mon Mar 30 2020 07:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 N 1.46497 * 109.47108 * 239.99600 * 2 1 3 5 5 C 1.46501 * 120.00000 * 54.59370 * 4 2 1 6 6 C 1.50701 * 109.47223 * 89.99818 * 5 4 2 7 7 H 1.07995 * 119.99676 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99855 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00031 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99635 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47405 * 59.99524 * 10 8 6 12 12 H 1.48496 * 109.46800 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47024 * 299.99308 * 10 8 6 14 14 C 1.39070 * 120.00514 * 234.59185 * 4 2 1 15 15 C 1.39280 * 120.07409 * 349.61964 * 14 4 2 16 16 N 1.31967 * 119.91058 * 179.73310 * 15 14 4 17 17 C 1.32343 * 120.06914 * 0.56403 * 16 15 14 18 18 Cl 1.73600 * 119.92231 * 179.70920 * 17 16 15 19 19 C 1.38321 * 120.15649 * 359.68741 * 17 16 15 20 20 N 1.32228 * 120.08872 * 0.02562 * 19 17 16 21 21 H 1.08994 * 109.47020 * 56.45807 * 1 2 3 22 22 H 1.09004 * 109.46995 * 176.45668 * 1 2 3 23 23 H 1.09005 * 109.47029 * 296.45245 * 1 2 3 24 24 H 1.09002 * 109.46974 * 119.99697 * 2 1 3 25 25 H 1.08997 * 109.47346 * 63.52035 * 3 2 1 26 26 H 1.08998 * 109.47282 * 183.52241 * 3 2 1 27 27 H 1.09006 * 109.46602 * 303.52671 * 3 2 1 28 28 H 1.08995 * 109.47476 * 210.00355 * 5 4 2 29 29 H 1.09005 * 109.46738 * 329.99647 * 5 4 2 30 30 H 0.97003 * 119.99577 * 179.97438 * 9 8 6 31 31 H 1.07998 * 120.04323 * 0.02562 * 15 14 4 32 32 H 1.07997 * 119.95339 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.5695 -0.2630 -2.5235 6 6 2.5074 0.7895 -3.0560 7 1 3.3529 1.1083 -2.4646 8 6 2.2853 1.3462 -4.2977 9 7 1.2553 0.9583 -5.0176 10 14 3.4483 2.6504 -4.9580 11 1 4.8187 2.0872 -5.0571 12 1 2.9932 3.0839 -6.3034 13 1 3.4576 3.8165 -4.0386 14 6 2.9080 -1.7523 -1.0716 15 6 3.5031 -2.0238 0.1580 16 7 4.3428 -3.0352 0.2737 17 6 4.6281 -3.7840 -0.7795 18 17 5.7391 -5.1089 -0.6248 19 6 4.0428 -3.5137 -2.0033 20 7 3.1962 -2.5053 -2.1250 21 1 -0.3633 0.5678 -0.8565 22 1 -0.3633 -1.0257 -0.0635 23 1 -0.3633 0.4578 0.9201 24 1 1.8933 -0.5138 0.8900 25 1 1.7292 1.9378 0.9198 26 1 3.1282 1.4431 -0.0631 27 1 1.6260 1.9742 -0.8568 28 1 1.5632 -1.1190 -3.1982 29 1 0.5633 0.1499 -2.4511 30 1 1.0989 1.3503 -5.8910 31 1 3.2739 -1.4103 1.0168 32 1 4.2776 -4.1272 -2.8606 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396760498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:20 Heat of formation + Delta-G solvation = 29.437673 kcal Electronic energy + Delta-G solvation = -16861.004434 eV Core-core repulsion = 14075.139135 eV Total energy + Delta-G solvation = -2785.865299 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.083 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.00537 -38.89519 -37.49702 -35.26815 -34.86050 -33.17493 -31.17191 -28.68952 -28.03909 -26.05583 -24.94350 -23.78739 -21.10523 -18.80784 -18.78292 -18.39643 -17.75134 -16.60646 -16.25548 -15.96299 -15.35130 -14.82736 -14.60208 -14.43103 -14.07267 -13.38791 -13.25027 -13.08126 -12.87363 -12.78827 -12.60537 -12.39554 -12.30286 -12.25122 -12.10658 -12.03519 -11.67167 -11.49706 -10.72611 -10.57390 -10.02218 -8.57371 -8.08794 -6.28297 -0.07112 0.23229 0.87437 1.37731 1.39624 1.46640 2.05856 2.40580 2.75181 3.13334 3.40624 3.42823 3.53376 3.97108 4.09036 4.24641 4.31005 4.57757 4.75712 4.85537 4.87851 5.02943 5.07077 5.17321 5.30914 5.43902 5.55203 5.72342 6.01199 6.13546 6.24788 6.55670 6.80432 7.02424 7.39755 8.89129 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.019959 B = 0.006811 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.508212 B = 4109.970599 C = 4948.244775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.136 3.864 3 C -0.152 4.152 4 N -0.574 5.574 5 C 0.268 3.732 6 C -0.524 4.524 7 H 0.051 0.949 8 C 0.014 3.986 9 N -0.926 5.926 10 Si 0.953 3.047 11 H -0.280 1.280 12 H -0.283 1.283 13 H -0.266 1.266 14 C 0.360 3.640 15 C -0.003 4.003 16 N -0.408 5.408 17 C 0.021 3.979 18 Cl -0.023 7.023 19 C 0.133 3.867 20 N -0.517 5.517 21 H 0.043 0.957 22 H 0.051 0.949 23 H 0.099 0.901 24 H 0.110 0.890 25 H 0.091 0.909 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.015 0.985 29 H 0.024 0.976 30 H 0.264 0.736 31 H 0.197 0.803 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 -5.028 11.066 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.033 3.967 3 C -0.210 4.210 4 N -0.281 5.281 5 C 0.147 3.853 6 C -0.563 4.563 7 H 0.069 0.931 8 C -0.185 4.185 9 N -0.566 5.566 10 Si 0.778 3.222 11 H -0.205 1.205 12 H -0.208 1.208 13 H -0.191 1.191 14 C 0.119 3.881 15 C -0.174 4.174 16 N -0.123 5.123 17 C -0.146 4.146 18 Cl 0.005 6.995 19 C -0.031 4.031 20 N -0.239 5.239 21 H 0.062 0.938 22 H 0.071 0.929 23 H 0.118 0.882 24 H 0.128 0.872 25 H 0.110 0.890 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.213 0.787 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.382 -4.921 10.883 12.179 hybrid contribution 0.591 0.522 -1.002 1.275 sum 2.974 -4.399 9.882 11.218 Atomic orbital electron populations 1.22113 0.93923 1.01981 1.03207 1.21426 0.95184 0.93650 0.86418 1.22113 1.00660 0.95554 1.02658 1.47357 1.43220 1.28762 1.08756 1.18811 0.94175 0.93966 0.78359 1.21617 1.11256 1.21474 1.01990 0.93118 1.25650 0.96847 0.99036 0.96963 1.70026 1.29781 1.44298 1.12523 0.85695 0.79029 0.79709 0.77739 1.20538 1.20782 1.19093 1.19802 0.89320 0.88118 0.90838 1.23295 0.98062 0.98353 0.97733 1.67511 1.10878 1.02878 1.31016 1.22275 1.02299 0.97768 0.92294 1.98348 1.60117 1.42827 1.98214 1.23621 0.89874 0.92590 0.96967 1.68288 1.17592 1.06687 1.31376 0.93783 0.92947 0.88236 0.87187 0.88987 0.93767 0.93556 0.96738 0.95851 0.92659 0.78691 0.79198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 8.97 71.98 0.65 -3.49 16 2 C 0.14 3.98 3.12 44.99 0.14 4.12 16 3 C -0.15 -4.48 8.50 71.98 0.61 -3.87 16 4 N -0.57 -22.51 2.50 -683.78 -1.71 -24.23 16 5 C 0.27 13.24 4.86 85.63 0.42 13.66 16 6 C -0.52 -28.00 7.97 25.60 0.20 -27.80 16 7 H 0.05 2.72 7.59 -2.91 -0.02 2.69 16 8 C 0.01 0.77 5.46 84.66 0.46 1.23 16 9 N -0.93 -53.58 13.29 21.45 0.28 -53.30 16 10 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 13 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 14 C 0.36 13.84 7.34 133.00 0.98 14.82 16 15 C 0.00 -0.11 10.40 84.92 0.88 0.77 16 16 N -0.41 -13.42 10.48 -185.57 -1.94 -15.36 16 17 C 0.02 0.67 7.28 84.64 0.62 1.29 16 18 Cl -0.02 -0.60 29.12 -2.72 -0.08 -0.68 16 19 C 0.13 4.47 11.00 84.65 0.93 5.40 16 20 N -0.52 -21.27 9.25 -192.52 -1.78 -23.05 16 21 H 0.04 1.42 6.68 -2.39 -0.02 1.40 16 22 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 24 H 0.11 2.50 5.51 -2.39 -0.01 2.49 16 25 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.68 7.18 -2.38 -0.02 1.66 16 28 H 0.01 0.82 7.27 -2.39 -0.02 0.80 16 29 H 0.02 1.21 6.24 -2.38 -0.01 1.20 16 30 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.20 4.85 5.97 -2.91 -0.02 4.84 16 32 H 0.19 5.18 8.06 -2.91 -0.02 5.16 16 Total: -1.00 -63.02 285.76 3.81 -59.21 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.13 Total: 5.77 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.89 Total: 6.14 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -5.15 Total: -115.93 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -63.02 3.81 -59.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396760498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.643 kcal (2) G-P(sol) polarization free energy of solvation -63.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds