Wall clock time and date at job start Mon Mar 30 2020 07:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47453 * 2 1 4 4 C 1.50705 * 109.46862 * 239.99978 * 2 1 3 5 5 H 1.07999 * 119.99923 * 240.00116 * 4 2 1 6 6 C 1.37873 * 119.99719 * 60.00439 * 4 2 1 7 7 N 1.31518 * 119.99710 * 179.72734 * 6 4 2 8 8 Si 1.86802 * 120.00418 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47143 * 269.72713 * 8 6 4 10 10 H 1.48499 * 109.46812 * 29.72791 * 8 6 4 11 11 H 1.48498 * 109.46887 * 149.72345 * 8 6 4 12 12 C 1.50698 * 109.46878 * 120.00532 * 2 1 3 13 13 O 1.21284 * 120.00215 * 120.00220 * 12 2 1 14 14 N 1.34783 * 119.99974 * 299.99219 * 12 2 1 15 15 C 1.39918 * 120.00018 * 175.37783 * 14 12 2 16 16 C 1.38843 * 120.04136 * 214.82385 * 15 14 12 17 17 C 1.38349 * 119.95318 * 179.77209 * 16 15 14 18 18 F 1.35106 * 119.98015 * 180.27440 * 17 16 15 19 19 C 1.38470 * 120.04637 * 0.49756 * 17 16 15 20 20 C 1.38474 * 120.08855 * 359.75312 * 19 17 16 21 21 F 1.35094 * 119.98233 * 179.97438 * 20 19 17 22 22 C 1.38355 * 120.04306 * 359.97438 * 20 19 17 23 23 H 1.08999 * 109.47008 * 59.99889 * 1 2 3 24 24 H 1.08995 * 109.47453 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46907 * 300.00197 * 1 2 3 26 26 H 0.96996 * 120.00146 * 180.27864 * 7 6 4 27 27 H 0.96993 * 119.99387 * 355.37727 * 14 12 2 28 28 H 1.08004 * 120.02571 * 0.02562 * 16 15 14 29 29 H 1.07999 * 119.96006 * 179.76805 * 19 17 16 30 30 H 1.07999 * 120.02137 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 2.1420 -0.8562 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8724 -2.7064 10 1 0.8423 2.1734 -1.4887 11 1 0.9806 1.9988 -3.9034 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.0913 -0.9632 3.5953 16 6 1.2630 -0.9918 4.7092 17 6 1.6428 -1.7014 5.8345 18 9 0.8347 -1.7341 6.9167 19 6 2.8528 -2.3743 5.8541 20 6 3.6828 -2.3427 4.7461 21 9 4.8631 -2.9996 4.7677 22 6 3.3040 -1.6389 3.6167 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.9110 -0.5224 -4.4375 27 1 1.2059 0.5757 2.5447 28 1 0.3208 -0.4638 4.6958 29 1 3.1497 -2.9247 6.7346 30 1 3.9514 -1.6149 2.7526 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596692992.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:18 Heat of formation + Delta-G solvation = -95.650857 kcal Electronic energy + Delta-G solvation = -18212.386442 eV Core-core repulsion = 14837.007465 eV Total energy + Delta-G solvation = -3375.378976 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.081 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.10833 -48.97254 -40.26035 -38.06198 -34.40815 -34.05192 -31.46761 -30.35652 -29.48413 -25.28067 -24.15911 -23.00617 -22.08069 -19.84499 -18.52789 -17.27174 -16.85397 -16.44303 -16.26802 -16.02744 -15.72190 -15.35126 -15.29708 -14.84928 -14.39900 -14.24272 -13.43613 -13.06618 -12.79216 -12.43853 -12.16873 -12.04960 -11.95842 -11.70681 -11.14749 -10.75792 -10.43778 -10.17502 -9.75326 -9.24966 -9.06798 -8.75737 -8.68750 -8.27821 -6.15591 -4.17895 0.90585 0.96615 3.03729 3.12333 3.16031 3.21769 3.29524 3.50158 3.92214 4.27686 4.33925 4.73495 4.81543 5.02887 5.12921 5.14086 5.53982 5.74754 5.84193 5.94409 5.97817 6.12402 6.15833 6.28849 6.43790 6.55504 6.89132 6.98911 7.34369 7.69653 8.38982 8.65898 9.02040 9.41443 10.97020 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.034990 B = 0.005230 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.032947 B = 5352.868328 C = 6007.001637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.000 4.000 3 H 0.058 0.942 4 C -0.513 4.513 5 H 0.095 0.905 6 C 0.073 3.927 7 N -0.891 5.891 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.267 1.267 11 H -0.294 1.294 12 C 0.528 3.472 13 O -0.501 6.501 14 N -0.686 5.686 15 C 0.222 3.778 16 C -0.202 4.202 17 C 0.147 3.853 18 F -0.133 7.133 19 C -0.220 4.220 20 C 0.150 3.850 21 F -0.129 7.129 22 C -0.173 4.173 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.034 0.966 26 H 0.266 0.734 27 H 0.413 0.587 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 2.853 17.324 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 H 0.076 0.924 4 C -0.551 4.551 5 H 0.113 0.887 6 C -0.129 4.129 7 N -0.529 5.529 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.192 1.192 11 H -0.221 1.221 12 C 0.318 3.682 13 O -0.373 6.373 14 N -0.332 5.332 15 C 0.124 3.876 16 C -0.224 4.224 17 C 0.127 3.873 18 F -0.111 7.111 19 C -0.240 4.240 20 C 0.130 3.870 21 F -0.108 7.108 22 C -0.194 4.194 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.249 0.751 28 H 0.162 0.838 29 H 0.163 0.837 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.040 2.110 16.938 17.190 hybrid contribution -0.892 1.054 0.029 1.381 sum -2.932 3.164 16.967 17.507 Atomic orbital electron populations 1.22156 0.96904 1.01849 0.99590 1.19351 0.93501 0.97696 0.91654 0.92403 1.20883 1.32678 1.14425 0.87085 0.88731 1.24968 0.95717 0.96559 0.95698 1.69870 1.44957 1.40066 0.97966 0.86920 0.80726 0.83662 0.77289 1.20403 1.19210 1.22134 1.21732 0.78633 0.84381 0.83453 1.90608 1.35168 1.25691 1.85791 1.44123 1.57927 1.26792 1.04355 1.17186 0.90889 0.92851 0.86633 1.20847 1.01867 1.06275 0.93365 1.16821 0.88690 0.98066 0.83714 1.91519 1.71959 1.94905 1.52752 1.20875 0.95378 1.07227 1.00542 1.17037 0.82141 0.93923 0.93891 1.91529 1.43968 1.78471 1.96821 1.21430 0.97509 1.01327 0.99121 0.92913 0.92119 0.94659 0.92366 0.75093 0.83833 0.83712 0.82075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.57 37.16 0.32 -2.46 16 2 C 0.00 -0.01 2.23 -92.92 -0.21 -0.22 16 3 H 0.06 1.18 7.20 -51.93 -0.37 0.81 16 4 C -0.51 -14.05 8.96 -34.44 -0.31 -14.36 16 5 H 0.09 2.97 7.00 -52.49 -0.37 2.60 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 8 Si 0.88 20.27 24.37 -169.99 -4.14 16.13 16 9 H -0.28 -6.16 6.88 56.52 0.39 -5.78 16 10 H -0.27 -5.60 6.52 56.52 0.37 -5.23 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.53 10.50 6.99 -10.98 -0.08 10.43 16 13 O -0.50 -11.80 12.89 5.55 0.07 -11.73 16 14 N -0.69 -10.13 5.19 -9.88 -0.05 -10.18 16 15 C 0.22 3.17 6.30 -83.72 -0.53 2.64 16 16 C -0.20 -2.39 9.94 -39.32 -0.39 -2.78 16 17 C 0.15 1.75 7.30 -39.46 -0.29 1.46 16 18 F -0.13 -1.54 17.27 2.25 0.04 -1.50 16 19 C -0.22 -2.62 10.00 -39.41 -0.39 -3.02 16 20 C 0.15 2.09 7.30 -39.45 -0.29 1.80 16 21 F -0.13 -1.86 17.27 2.25 0.04 -1.82 16 22 C -0.17 -2.69 8.67 -39.31 -0.34 -3.03 16 23 H 0.05 1.05 3.28 -51.93 -0.17 0.88 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.03 0.50 7.68 -51.93 -0.40 0.10 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.41 4.62 8.39 -40.82 -0.34 4.28 16 28 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 29 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.16 2.88 6.22 -52.49 -0.33 2.55 16 LS Contribution 265.46 15.07 4.00 4.00 Total: -1.00 -30.78 265.46 -4.30 -35.08 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -2.43 Total: 3.52 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.60 Total: -7.60 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.72 Total: -36.08 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.07 Total: -11.73 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.31 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.14 Total: 16.13 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.78 -4.30 -35.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596692992.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.572 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds