Wall clock time and date at job start Mon Mar 30 2020 07:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47101 * 2 1 4 4 C 1.50695 * 109.47348 * 239.99457 * 2 1 3 5 5 H 1.08004 * 120.00329 * 240.00097 * 4 2 1 6 6 C 1.37878 * 120.00219 * 60.00001 * 4 2 1 7 7 N 1.31515 * 119.99591 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00241 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46840 * 180.02562 * 8 6 4 10 10 H 1.48494 * 109.47352 * 300.00204 * 8 6 4 11 11 H 1.48499 * 109.47079 * 60.00676 * 8 6 4 12 12 C 1.50707 * 109.46843 * 119.99678 * 2 1 3 13 13 O 1.21288 * 119.99904 * 120.00375 * 12 2 1 14 14 N 1.34776 * 119.99812 * 299.99704 * 12 2 1 15 15 C 1.40167 * 119.99712 * 174.92939 * 14 12 2 16 16 C 1.38976 * 120.08879 * 270.74854 * 15 14 12 17 17 F 1.35100 * 120.04419 * 0.02562 * 16 15 14 18 18 C 1.38346 * 119.91480 * 179.76725 * 16 15 14 19 19 C 1.38265 * 120.08371 * 0.51572 * 18 16 15 20 20 C 1.38261 * 120.17286 * 359.73664 * 19 18 16 21 21 C 1.38344 * 120.08769 * 0.02562 * 20 19 18 22 22 F 1.35097 * 120.04925 * 180.02562 * 21 20 19 23 23 H 1.09004 * 109.46730 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47566 * 300.00545 * 1 2 3 25 25 H 1.09000 * 109.47017 * 60.00841 * 1 2 3 26 26 H 0.97000 * 120.00185 * 179.97438 * 7 6 4 27 27 H 0.97000 * 119.99903 * 354.93869 * 14 12 2 28 28 H 1.08001 * 119.95630 * 180.25008 * 18 16 15 29 29 H 1.07998 * 119.91282 * 179.76490 * 19 18 16 30 30 H 1.08004 * 119.96048 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3227 -1.1199 -4.0078 9 1 1.8281 -0.4196 -5.2204 10 1 3.8076 -1.1193 -4.0076 11 1 1.8281 -2.5201 -4.0080 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.0838 -0.9689 3.5971 16 6 1.2443 -1.9498 4.1115 17 9 0.0632 -2.2125 3.5107 18 6 1.6223 -2.6608 5.2366 19 6 2.8285 -2.3891 5.8553 20 6 3.6640 -1.4104 5.3497 21 6 3.2954 -0.6985 4.2222 22 9 4.1126 0.2573 3.7284 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 0.7096 1.1615 -3.4845 27 1 1.2113 0.5793 2.5449 28 1 0.9723 -3.4260 5.6345 29 1 3.1191 -2.9432 6.7356 30 1 4.6053 -1.2007 5.8360 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596881442.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:25 Heat of formation + Delta-G solvation = -102.749947 kcal Electronic energy + Delta-G solvation = -18678.674006 eV Core-core repulsion = 15302.987190 eV Total energy + Delta-G solvation = -3375.686816 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.081 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.88375 -48.85602 -39.56629 -38.12337 -34.30093 -33.77085 -30.75171 -30.37433 -29.02675 -25.14518 -23.70329 -22.88097 -21.94541 -19.67093 -18.25653 -17.39968 -17.23458 -16.23531 -15.98581 -15.57974 -15.50584 -15.16929 -14.91353 -14.45532 -14.31375 -13.95983 -13.07661 -12.78089 -12.55068 -12.08470 -11.99812 -11.84665 -11.53422 -11.00896 -10.75762 -10.69942 -10.28496 -9.98619 -9.10491 -9.02273 -8.92382 -8.80108 -8.66035 -8.34860 -6.03778 -4.07350 0.88523 0.92278 3.24474 3.37040 3.39119 3.44187 3.52769 3.60656 3.88686 4.38797 4.46919 4.60520 4.83837 5.00462 5.29548 5.43092 5.77354 5.82652 5.93042 6.03770 6.08334 6.51384 6.61573 6.82290 6.89342 7.09728 7.44177 7.72200 7.90157 8.06821 8.33182 9.00314 9.07947 9.57921 11.03856 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.032674 B = 0.005871 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.751755 B = 4767.937178 C = 5014.219079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.034 3.966 3 H 0.056 0.944 4 C -0.504 4.504 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.526 3.474 13 O -0.530 6.530 14 N -0.701 5.701 15 C 0.081 3.919 16 C 0.133 3.867 17 F -0.122 7.122 18 C -0.164 4.164 19 C -0.065 4.065 20 C -0.164 4.164 21 C 0.133 3.867 22 F -0.123 7.123 23 H 0.032 0.968 24 H 0.013 0.987 25 H 0.095 0.905 26 H 0.262 0.738 27 H 0.409 0.591 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 -2.257 17.280 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.013 3.987 3 H 0.074 0.926 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.730 3.270 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.318 3.682 13 O -0.403 6.403 14 N -0.356 5.356 15 C -0.013 4.013 16 C 0.111 3.889 17 F -0.100 7.100 18 C -0.183 4.183 19 C -0.084 4.084 20 C -0.184 4.184 21 C 0.112 3.888 22 F -0.101 7.101 23 H 0.052 0.948 24 H 0.032 0.968 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.247 0.753 28 H 0.161 0.839 29 H 0.161 0.839 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.954 -2.837 16.927 17.189 hybrid contribution -0.020 0.111 -0.949 0.955 sum 0.934 -2.726 15.978 16.236 Atomic orbital electron populations 1.21751 0.96140 1.00051 1.01080 1.18886 0.94359 0.96919 0.88501 0.92638 1.21079 1.31276 1.12935 0.88902 0.90824 1.24940 0.95034 0.95052 0.99100 1.69859 1.36939 1.22972 1.23732 0.86476 0.79294 0.79706 0.81503 1.21304 1.20162 1.20164 1.22360 0.77750 0.84382 0.83742 1.90555 1.36599 1.26918 1.86202 1.43883 1.61018 1.27331 1.03360 1.17638 0.93823 0.97868 0.91989 1.17799 0.82607 0.95645 0.92802 1.91546 1.43226 1.92618 1.82656 1.21131 0.99089 1.02017 0.96099 1.20812 0.92419 0.95896 0.99232 1.21129 1.02218 0.98391 0.96617 1.17799 0.88127 0.89102 0.93762 1.91537 1.70718 1.60803 1.87082 0.94842 0.96790 0.88636 0.92831 0.75318 0.83894 0.83905 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.87 37.16 0.33 -2.78 16 2 C 0.03 0.88 2.64 -92.92 -0.24 0.63 16 3 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 4 C -0.50 -14.55 8.37 -34.44 -0.29 -14.84 16 5 H 0.07 2.24 6.75 -52.48 -0.35 1.89 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.90 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.53 12.57 7.11 -10.98 -0.08 12.49 16 13 O -0.53 -14.43 15.44 5.55 0.09 -14.35 16 14 N -0.70 -13.31 4.78 -9.75 -0.05 -13.36 16 15 C 0.08 1.39 5.30 -83.49 -0.44 0.94 16 16 C 0.13 2.04 7.31 -39.27 -0.29 1.75 16 17 F -0.12 -2.07 17.08 2.25 0.04 -2.04 16 18 C -0.16 -1.85 10.02 -39.53 -0.40 -2.25 16 19 C -0.07 -0.62 10.04 -39.56 -0.40 -1.02 16 20 C -0.16 -1.85 10.02 -39.53 -0.40 -2.24 16 21 C 0.13 2.04 7.31 -39.26 -0.29 1.76 16 22 F -0.12 -2.07 17.08 2.25 0.04 -2.03 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.01 0.26 7.69 -51.93 -0.40 -0.14 16 25 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.41 6.62 8.41 -40.82 -0.34 6.28 16 28 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 276.53 15.07 4.17 4.17 Total: -1.00 -32.70 276.53 -5.35 -38.05 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -2.66 Total: 1.12 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.58 Total: -3.96 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.58 Total: -38.04 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.09 Total: -14.35 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.08 Total: -4.07 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.70 -5.35 -38.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596881442.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.695 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds