Wall clock time and date at job start Mon Mar 30 2020 07:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47101 * 2 1 4 4 C 1.50695 * 109.47348 * 239.99457 * 2 1 3 5 5 H 1.08004 * 120.00329 * 240.00097 * 4 2 1 6 6 C 1.37878 * 120.00219 * 60.00001 * 4 2 1 7 7 N 1.31515 * 119.99591 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00241 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46840 * 180.02562 * 8 6 4 10 10 H 1.48494 * 109.47352 * 300.00204 * 8 6 4 11 11 H 1.48499 * 109.47079 * 60.00676 * 8 6 4 12 12 C 1.50707 * 109.46843 * 119.99678 * 2 1 3 13 13 O 1.21288 * 119.99904 * 120.00375 * 12 2 1 14 14 N 1.34776 * 119.99812 * 299.99704 * 12 2 1 15 15 C 1.40167 * 119.99712 * 174.92939 * 14 12 2 16 16 C 1.38976 * 120.08879 * 270.74854 * 15 14 12 17 17 F 1.35100 * 120.04419 * 0.02562 * 16 15 14 18 18 C 1.38346 * 119.91480 * 179.76725 * 16 15 14 19 19 C 1.38265 * 120.08371 * 0.51572 * 18 16 15 20 20 C 1.38261 * 120.17286 * 359.73664 * 19 18 16 21 21 C 1.38344 * 120.08769 * 0.02562 * 20 19 18 22 22 F 1.35097 * 120.04925 * 180.02562 * 21 20 19 23 23 H 1.09004 * 109.46730 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47566 * 300.00545 * 1 2 3 25 25 H 1.09000 * 109.47017 * 60.00841 * 1 2 3 26 26 H 0.97000 * 120.00185 * 179.97438 * 7 6 4 27 27 H 0.97000 * 119.99903 * 354.93869 * 14 12 2 28 28 H 1.08001 * 119.95630 * 180.25008 * 18 16 15 29 29 H 1.07998 * 119.91282 * 179.76490 * 19 18 16 30 30 H 1.08004 * 119.96048 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3227 -1.1199 -4.0078 9 1 1.8281 -0.4196 -5.2204 10 1 3.8076 -1.1193 -4.0076 11 1 1.8281 -2.5201 -4.0080 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.0838 -0.9689 3.5971 16 6 1.2443 -1.9498 4.1115 17 9 0.0632 -2.2125 3.5107 18 6 1.6223 -2.6608 5.2366 19 6 2.8285 -2.3891 5.8553 20 6 3.6640 -1.4104 5.3497 21 6 3.2954 -0.6985 4.2222 22 9 4.1126 0.2573 3.7284 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 0.7096 1.1615 -3.4845 27 1 1.2113 0.5793 2.5449 28 1 0.9723 -3.4260 5.6345 29 1 3.1191 -2.9432 6.7356 30 1 4.6053 -1.2007 5.8360 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596881442.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:24 Heat of formation + Delta-G solvation = -124.117503 kcal Electronic energy + Delta-G solvation = -18679.600573 eV Core-core repulsion = 15302.987190 eV Total energy + Delta-G solvation = -3376.613383 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.08140 -50.05242 -41.10981 -39.42937 -35.88477 -35.80729 -32.71071 -31.35834 -30.35012 -27.26369 -25.27646 -23.92087 -23.41546 -21.43569 -19.47565 -18.78410 -18.39508 -18.19728 -17.69748 -16.89611 -16.70429 -16.49993 -16.38665 -15.94870 -15.81294 -15.37683 -14.92184 -14.52122 -13.85411 -13.58998 -13.08896 -13.03816 -13.00256 -12.86640 -12.71009 -12.65546 -12.28738 -12.04974 -11.13634 -10.79858 -10.56527 -10.48501 -9.95714 -9.81393 -8.19228 -6.30736 -0.15725 -0.07564 1.39284 1.41279 1.49799 1.67739 2.07364 2.34445 2.43961 2.79101 3.10137 3.37699 3.77504 3.86684 4.12596 4.17931 4.48390 4.66247 4.77589 4.86711 4.92468 4.95694 5.00780 5.14472 5.38970 5.40688 5.67490 5.78376 5.87171 6.10585 6.46401 6.76394 7.26061 7.39280 8.86779 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.032674 B = 0.005871 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.751755 B = 4767.937178 C = 5014.219079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.029 3.971 3 H 0.045 0.955 4 C -0.535 4.535 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.959 3.041 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.530 3.470 13 O -0.572 6.572 14 N -0.685 5.685 15 C 0.038 3.962 16 C 0.104 3.896 17 F -0.140 7.140 18 C -0.150 4.150 19 C -0.041 4.041 20 C -0.150 4.150 21 C 0.105 3.895 22 F -0.141 7.141 23 H 0.021 0.979 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.267 0.733 27 H 0.419 0.581 28 H 0.176 0.824 29 H 0.198 0.802 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.864 -3.239 19.488 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.008 3.992 3 H 0.063 0.937 4 C -0.573 4.573 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.784 3.216 9 H -0.196 1.196 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.321 3.679 13 O -0.449 6.449 14 N -0.338 5.338 15 C -0.055 4.055 16 C 0.083 3.917 17 F -0.119 7.119 18 C -0.169 4.169 19 C -0.058 4.058 20 C -0.169 4.169 21 C 0.084 3.916 22 F -0.120 7.120 23 H 0.041 0.959 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.258 0.742 28 H 0.194 0.806 29 H 0.215 0.785 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.238 -3.780 19.179 19.587 hybrid contribution -0.100 0.406 -1.475 1.533 sum 1.138 -3.374 17.705 18.059 Atomic orbital electron populations 1.21552 0.94700 0.99468 1.01844 1.18814 0.95507 0.96047 0.88843 0.93705 1.21209 1.32116 1.12953 0.90999 0.93359 1.25617 0.95031 0.95727 1.01453 1.69935 1.36884 1.23390 1.24589 0.85598 0.78661 0.78702 0.78604 1.19582 1.20147 1.20122 1.21916 0.77381 0.83698 0.84941 1.90512 1.38635 1.28707 1.87082 1.43406 1.59867 1.27478 1.03035 1.17989 0.95766 0.99758 0.92026 1.18185 0.82319 0.96567 0.94580 1.91495 1.44208 1.92834 1.83336 1.21615 1.00029 1.01185 0.94028 1.21473 0.90500 0.94279 0.99583 1.21613 1.03504 0.97142 0.94599 1.18192 0.87719 0.90149 0.95561 1.91486 1.71106 1.61723 1.87658 0.95944 0.93191 0.90551 0.92385 0.74175 0.80615 0.78492 0.80625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.87 71.98 0.64 -5.00 16 2 C 0.03 1.54 2.64 -12.29 -0.03 1.50 16 3 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 4 C -0.53 -32.02 8.37 25.60 0.21 -31.81 16 5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -51.88 11.32 21.45 0.24 -51.63 16 8 Si 0.96 45.78 29.54 68.60 2.03 47.80 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 C 0.53 26.29 7.11 87.66 0.62 26.92 16 13 O -0.57 -32.56 15.44 -3.05 -0.05 -32.61 16 14 N -0.68 -26.74 4.78 -303.14 -1.45 -28.19 16 15 C 0.04 1.30 5.30 38.17 0.20 1.51 16 16 C 0.10 3.11 7.31 22.47 0.16 3.28 16 17 F -0.14 -4.77 17.08 44.97 0.77 -4.00 16 18 C -0.15 -2.83 10.02 22.30 0.22 -2.61 16 19 C -0.04 -0.56 10.04 22.28 0.22 -0.34 16 20 C -0.15 -2.83 10.02 22.30 0.22 -2.61 16 21 C 0.10 3.12 7.31 22.48 0.16 3.29 16 22 F -0.14 -4.81 17.08 44.97 0.77 -4.04 16 23 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.05 1.97 7.69 -2.39 -0.02 1.95 16 25 H 0.08 3.97 6.07 -2.39 -0.01 3.95 16 26 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 27 H 0.42 13.95 8.41 -92.71 -0.78 13.17 16 28 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.20 0.69 8.06 -2.91 -0.02 0.66 16 30 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -74.75 276.53 5.81 -68.94 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.41 Total: 7.93 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 3.09 Total: -4.20 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -1.21 Total: -79.82 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.05 Total: -32.61 kcal Atomic # 9 Polarization: -9.58 SS G_CDS: 1.54 Total: -8.04 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -74.75 5.81 -68.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596881442.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.182 kcal (2) G-P(sol) polarization free energy of solvation -74.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds