Wall clock time and date at job start Mon Mar 30 2020 07:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46878 * 2 1 4 4 C 1.50692 * 109.47419 * 239.99689 * 2 1 3 5 5 H 1.07997 * 120.00153 * 240.00297 * 4 2 1 6 6 C 1.37882 * 119.99782 * 60.00092 * 4 2 1 7 7 N 1.31510 * 120.00011 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99728 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47572 * 60.00021 * 8 6 4 10 10 H 1.48508 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47184 * 299.99527 * 8 6 4 12 12 C 1.50704 * 109.46983 * 119.99573 * 2 1 3 13 13 O 1.21288 * 119.99840 * 120.00167 * 12 2 1 14 14 N 1.34773 * 120.00308 * 300.00339 * 12 2 1 15 15 C 1.40047 * 120.00239 * 185.52993 * 14 12 2 16 16 C 1.38843 * 120.06389 * 24.80428 * 15 14 12 17 17 C 1.38136 * 119.99805 * 180.02562 * 16 15 14 18 18 C 1.38271 * 120.13334 * 0.02562 * 17 16 15 19 19 C 1.38470 * 120.12793 * 359.97438 * 18 17 16 20 20 F 1.35097 * 120.00130 * 179.97438 * 19 18 17 21 21 C 1.38522 * 119.99851 * 0.02562 * 19 18 17 22 22 F 1.35091 * 120.06146 * 179.70292 * 21 19 18 23 23 H 1.09005 * 109.47279 * 300.00049 * 1 2 3 24 24 H 1.08996 * 109.46846 * 59.99856 * 1 2 3 25 25 H 1.08997 * 109.46878 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00114 * 180.02562 * 7 6 4 27 27 H 0.97003 * 120.00035 * 5.52182 * 14 12 2 28 28 H 1.08002 * 120.00551 * 0.02562 * 16 15 14 29 29 H 1.08004 * 119.93732 * 180.02562 * 17 16 15 30 30 H 1.07998 * 119.93800 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5203 -4.0076 10 1 1.8271 -0.4200 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 6 2.0323 -0.7103 1.2306 13 8 2.7296 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.2660 -0.8383 3.5958 16 6 3.4838 -1.4998 3.5115 17 6 4.0339 -2.0802 4.6378 18 6 3.3739 -2.0045 5.8505 19 6 2.1591 -1.3461 5.9407 20 9 1.5162 -1.2742 7.1267 21 6 1.6025 -0.7622 4.8146 22 9 0.4145 -0.1247 4.8999 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7082 1.1607 -3.4843 27 1 1.0850 0.4892 2.5452 28 1 4.0010 -1.5607 2.5653 29 1 4.9815 -2.5942 4.5712 30 1 3.8067 -2.4598 6.7290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596971721.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:33 Heat of formation + Delta-G solvation = -103.055419 kcal Electronic energy + Delta-G solvation = -18381.831501 eV Core-core repulsion = 15006.131439 eV Total energy + Delta-G solvation = -3375.700062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.41413 -48.49113 -40.10200 -38.02252 -34.40248 -33.95258 -30.90153 -30.24272 -29.08344 -25.26739 -23.93381 -22.88924 -22.05087 -19.68971 -18.31997 -17.50576 -17.21822 -16.33754 -16.29617 -15.74446 -15.37925 -14.94585 -14.80754 -14.57742 -14.33300 -14.19549 -13.32204 -12.88075 -12.65573 -12.28166 -12.04747 -11.69281 -11.58365 -11.08799 -10.86651 -10.78016 -10.46196 -10.27017 -10.07926 -9.13238 -8.92594 -8.67812 -8.45454 -8.01948 -6.13690 -4.18524 0.96206 1.04683 3.16494 3.24361 3.30539 3.33729 3.40059 3.65217 3.90497 4.37738 4.38849 4.70967 4.77358 5.19729 5.22534 5.32190 5.75211 5.82719 6.00933 6.17195 6.33196 6.47531 6.52035 6.67749 6.76601 6.97559 7.29891 7.59157 7.73587 7.93793 8.16780 8.77060 8.89916 9.47568 10.93810 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.041939 B = 0.005097 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.481476 B = 5491.715587 C = 6053.368281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.033 3.967 3 H 0.060 0.940 4 C -0.508 4.508 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.522 3.478 13 O -0.516 6.516 14 N -0.680 5.680 15 C 0.169 3.831 16 C -0.123 4.123 17 C -0.076 4.076 18 C -0.162 4.162 19 C 0.087 3.913 20 F -0.132 7.132 21 C 0.016 3.984 22 F -0.130 7.130 23 H 0.013 0.987 24 H 0.098 0.902 25 H 0.034 0.966 26 H 0.263 0.737 27 H 0.414 0.586 28 H 0.165 0.835 29 H 0.141 0.859 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 -1.667 13.936 14.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 H 0.078 0.922 4 C -0.546 4.546 5 H 0.094 0.906 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.314 3.686 13 O -0.389 6.389 14 N -0.324 5.324 15 C 0.070 3.930 16 C -0.144 4.144 17 C -0.095 4.095 18 C -0.182 4.182 19 C 0.066 3.934 20 F -0.110 7.110 21 C -0.007 4.007 22 F -0.109 7.109 23 H 0.032 0.968 24 H 0.116 0.884 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.250 0.750 28 H 0.182 0.818 29 H 0.159 0.841 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.227 -2.197 13.614 14.162 hybrid contribution -0.514 0.127 -0.418 0.675 sum 2.713 -2.069 13.195 13.629 Atomic orbital electron populations 1.21803 0.96129 1.00211 1.01349 1.18949 0.94485 0.97007 0.88369 0.92238 1.21042 1.31692 1.13101 0.88767 0.90642 1.24947 0.94917 0.94993 0.99197 1.69846 1.36594 1.22908 1.23940 0.86458 0.79283 0.79703 0.81430 1.20122 1.21295 1.20104 1.22460 0.78405 0.83922 0.83782 1.90500 1.36862 1.25488 1.86073 1.44208 1.47317 1.36498 1.04406 1.17845 0.92731 0.96883 0.85563 1.21590 0.93238 0.98323 1.01212 1.20995 0.99845 0.97840 0.90824 1.20965 0.94164 1.02979 1.00049 1.17365 0.93526 1.02353 0.80131 1.91503 1.81197 1.94767 1.43568 1.17328 0.84959 1.04626 0.93788 1.91481 1.42804 1.79808 1.96789 0.96763 0.88395 0.94676 0.92689 0.74985 0.81805 0.84120 0.84088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.86 37.16 0.33 -2.69 16 2 C 0.03 0.77 2.65 -92.92 -0.25 0.53 16 3 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 4 C -0.51 -13.67 8.37 -34.44 -0.29 -13.95 16 5 H 0.08 2.12 6.75 -52.49 -0.35 1.76 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -24.20 11.32 55.43 0.63 -23.57 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.52 11.15 6.96 -10.99 -0.08 11.07 16 13 O -0.52 -12.08 12.62 5.55 0.07 -12.01 16 14 N -0.68 -11.91 5.24 -9.81 -0.05 -11.96 16 15 C 0.17 2.74 6.44 -83.61 -0.54 2.20 16 16 C -0.12 -1.87 8.72 -39.40 -0.34 -2.22 16 17 C -0.08 -0.89 10.04 -39.61 -0.40 -1.29 16 18 C -0.16 -1.83 10.02 -39.48 -0.40 -2.22 16 19 C 0.09 1.19 7.30 -39.39 -0.29 0.90 16 20 F -0.13 -1.82 17.18 2.25 0.04 -1.78 16 21 C 0.02 0.25 7.31 -39.20 -0.29 -0.04 16 22 F -0.13 -2.04 16.73 2.25 0.04 -2.00 16 23 H 0.01 0.25 7.45 -51.93 -0.39 -0.13 16 24 H 0.10 2.38 6.07 -51.93 -0.32 2.07 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.41 6.42 7.73 -40.82 -0.32 6.10 16 28 H 0.16 2.79 5.79 -52.49 -0.30 2.49 16 29 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 30 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 270.41 15.07 4.08 4.08 Total: -1.00 -28.53 270.41 -5.35 -33.88 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -2.50 Total: 3.54 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.63 Total: -6.18 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.58 Total: -35.53 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.07 Total: -12.01 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.08 Total: -3.78 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.53 -5.35 -33.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596971721.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.173 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds