Wall clock time and date at job start Mon Mar 30 2020 07:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46878 * 2 1 4 4 C 1.50692 * 109.47419 * 239.99689 * 2 1 3 5 5 H 1.07997 * 120.00153 * 240.00297 * 4 2 1 6 6 C 1.37882 * 119.99782 * 60.00092 * 4 2 1 7 7 N 1.31510 * 120.00011 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99728 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47572 * 60.00021 * 8 6 4 10 10 H 1.48508 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47184 * 299.99527 * 8 6 4 12 12 C 1.50704 * 109.46983 * 119.99573 * 2 1 3 13 13 O 1.21288 * 119.99840 * 120.00167 * 12 2 1 14 14 N 1.34773 * 120.00308 * 300.00339 * 12 2 1 15 15 C 1.40047 * 120.00239 * 185.52993 * 14 12 2 16 16 C 1.38843 * 120.06389 * 24.80428 * 15 14 12 17 17 C 1.38136 * 119.99805 * 180.02562 * 16 15 14 18 18 C 1.38271 * 120.13334 * 0.02562 * 17 16 15 19 19 C 1.38470 * 120.12793 * 359.97438 * 18 17 16 20 20 F 1.35097 * 120.00130 * 179.97438 * 19 18 17 21 21 C 1.38522 * 119.99851 * 0.02562 * 19 18 17 22 22 F 1.35091 * 120.06146 * 179.70292 * 21 19 18 23 23 H 1.09005 * 109.47279 * 300.00049 * 1 2 3 24 24 H 1.08996 * 109.46846 * 59.99856 * 1 2 3 25 25 H 1.08997 * 109.46878 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00114 * 180.02562 * 7 6 4 27 27 H 0.97003 * 120.00035 * 5.52182 * 14 12 2 28 28 H 1.08002 * 120.00551 * 0.02562 * 16 15 14 29 29 H 1.08004 * 119.93732 * 180.02562 * 17 16 15 30 30 H 1.07998 * 119.93800 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5203 -4.0076 10 1 1.8271 -0.4200 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 6 2.0323 -0.7103 1.2306 13 8 2.7296 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.2660 -0.8383 3.5958 16 6 3.4838 -1.4998 3.5115 17 6 4.0339 -2.0802 4.6378 18 6 3.3739 -2.0045 5.8505 19 6 2.1591 -1.3461 5.9407 20 9 1.5162 -1.2742 7.1267 21 6 1.6025 -0.7622 4.8146 22 9 0.4145 -0.1247 4.8999 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7082 1.1607 -3.4843 27 1 1.0850 0.4892 2.5452 28 1 4.0010 -1.5607 2.5653 29 1 4.9815 -2.5942 4.5712 30 1 3.8067 -2.4598 6.7290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596971721.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:32 Heat of formation + Delta-G solvation = -119.761249 kcal Electronic energy + Delta-G solvation = -18382.555920 eV Core-core repulsion = 15006.131439 eV Total energy + Delta-G solvation = -3376.424481 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.54184 -49.62653 -41.54754 -39.32730 -35.87837 -35.82959 -32.73485 -31.33395 -30.38923 -27.24904 -25.41376 -24.05159 -23.48981 -21.25313 -19.59745 -18.71893 -18.56189 -18.13537 -17.51945 -17.16313 -16.78819 -16.37781 -16.16753 -15.96646 -15.72046 -15.37849 -15.00277 -14.58165 -13.94877 -13.62414 -13.48335 -13.06483 -12.93149 -12.81829 -12.66143 -12.53921 -12.27763 -12.02378 -11.61815 -11.10232 -10.66280 -10.40043 -9.80559 -9.26966 -8.16988 -6.28275 -0.13606 -0.06395 1.43820 1.44674 1.52801 1.65320 1.89852 2.43900 2.45258 2.76742 3.13686 3.30466 3.63145 3.75380 3.99702 4.23224 4.41939 4.66361 4.73575 4.85669 4.92187 4.96997 5.05576 5.24857 5.32621 5.42050 5.70116 5.79416 5.87019 6.11036 6.40536 6.79655 7.14995 7.40880 8.88873 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.041939 B = 0.005097 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.481476 B = 5491.715587 C = 6053.368281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.028 3.972 3 H 0.050 0.950 4 C -0.530 4.530 5 H 0.056 0.944 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.278 1.278 11 H -0.274 1.274 12 C 0.529 3.471 13 O -0.544 6.544 14 N -0.670 5.670 15 C 0.141 3.859 16 C -0.137 4.137 17 C -0.060 4.060 18 C -0.136 4.136 19 C 0.081 3.919 20 F -0.132 7.132 21 C 0.008 3.992 22 F -0.137 7.137 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.026 0.974 26 H 0.266 0.734 27 H 0.421 0.579 28 H 0.143 0.857 29 H 0.179 0.821 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.716 -2.442 15.547 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.784 3.216 9 H -0.202 1.202 10 H -0.203 1.203 11 H -0.199 1.199 12 C 0.320 3.680 13 O -0.420 6.420 14 N -0.315 5.315 15 C 0.043 3.957 16 C -0.158 4.158 17 C -0.079 4.079 18 C -0.155 4.155 19 C 0.061 3.939 20 F -0.110 7.110 21 C -0.015 4.015 22 F -0.116 7.116 23 H 0.067 0.933 24 H 0.094 0.906 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.259 0.741 28 H 0.160 0.840 29 H 0.196 0.804 30 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.032 -2.953 15.270 16.067 hybrid contribution -0.725 0.358 -0.780 1.124 sum 3.307 -2.594 14.489 15.086 Atomic orbital electron populations 1.21628 0.95085 0.99738 1.01914 1.18853 0.95347 0.96303 0.88831 0.93231 1.21221 1.32028 1.13009 0.90614 0.92538 1.25603 0.95072 0.95668 1.01527 1.69935 1.36950 1.23565 1.24530 0.85608 0.78772 0.78633 0.78620 1.20152 1.20282 1.19888 1.21852 0.78228 0.83490 0.84451 1.90485 1.38170 1.26607 1.86707 1.43772 1.47198 1.36575 1.03911 1.17962 0.93766 0.98668 0.85262 1.21580 0.93170 0.99225 1.01789 1.21369 1.00750 0.96223 0.89520 1.21413 0.92447 1.00567 1.01122 1.17579 0.94286 1.02503 0.79575 1.91508 1.81388 1.94780 1.43371 1.17445 0.84901 1.05133 0.94047 1.91458 1.43238 1.80051 1.96829 0.93313 0.90607 0.95528 0.92520 0.74101 0.83986 0.80399 0.80029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 8.86 71.98 0.64 -4.97 16 2 C 0.03 1.34 2.65 -12.29 -0.03 1.31 16 3 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 4 C -0.53 -29.27 8.37 25.60 0.21 -29.05 16 5 H 0.06 3.28 6.75 -2.91 -0.02 3.26 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -49.79 11.32 21.45 0.24 -49.55 16 8 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 C 0.53 23.03 6.96 87.66 0.61 23.64 16 13 O -0.54 -26.15 12.62 -3.05 -0.04 -26.19 16 14 N -0.67 -23.59 5.24 -303.35 -1.59 -25.18 16 15 C 0.14 4.50 6.44 38.15 0.25 4.74 16 16 C -0.14 -4.03 8.72 22.39 0.20 -3.83 16 17 C -0.06 -1.20 10.04 22.25 0.22 -0.98 16 18 C -0.14 -2.50 10.02 22.33 0.22 -2.27 16 19 C 0.08 1.99 7.30 22.39 0.16 2.16 16 20 F -0.13 -3.29 17.18 44.97 0.77 -2.52 16 21 C 0.01 0.23 7.31 22.51 0.16 0.39 16 22 F -0.14 -4.19 16.73 44.97 0.75 -3.44 16 23 H 0.05 1.78 7.45 -2.38 -0.02 1.76 16 24 H 0.08 3.74 6.07 -2.39 -0.01 3.73 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 27 H 0.42 13.06 7.73 -92.71 -0.72 12.34 16 28 H 0.14 4.88 5.79 -2.91 -0.02 4.87 16 29 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 30 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -62.33 270.41 5.74 -56.59 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.48 Total: 12.14 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 3.09 Total: -7.28 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -1.35 Total: -74.73 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.04 Total: -26.19 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 1.52 Total: -5.95 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -62.33 5.74 -56.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596971721.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.170 kcal (2) G-P(sol) polarization free energy of solvation -62.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds