Wall clock time and date at job start Mon Mar 30 2020 07:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47434 * 2 1 4 4 C 1.52997 * 109.47230 * 120.00281 * 2 1 3 5 5 C 1.50700 * 109.47291 * 185.00102 * 4 2 1 6 6 H 1.07999 * 119.99600 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00242 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00079 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00289 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47249 * 59.99335 * 9 7 5 11 11 H 1.48493 * 109.47219 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46703 * 299.99477 * 9 7 5 13 13 S 1.81400 * 109.46891 * 240.00085 * 2 1 3 14 14 C 1.76196 * 103.00277 * 70.17447 * 13 2 1 15 15 C 1.38690 * 120.07648 * 6.04150 * 14 13 2 16 16 C 1.38263 * 120.02019 * 180.02562 * 15 14 13 17 17 C 1.38457 * 120.16776 * 359.97438 * 16 15 14 18 18 F 1.35106 * 119.92014 * 180.02562 * 17 16 15 19 19 C 1.38455 * 120.15583 * 0.04308 * 17 16 15 20 20 C 1.38652 * 119.97786 * 359.68576 * 19 17 16 21 21 N 1.39997 * 120.08556 * 180.32129 * 20 19 17 22 22 H 1.09000 * 109.47381 * 185.72707 * 1 2 3 23 23 H 1.09003 * 109.47093 * 305.72650 * 1 2 3 24 24 H 1.09001 * 109.47190 * 65.72367 * 1 2 3 25 25 H 1.09001 * 109.47353 * 64.99280 * 4 2 1 26 26 H 1.09002 * 109.47169 * 304.99448 * 4 2 1 27 27 H 0.97002 * 120.00569 * 180.02562 * 8 7 5 28 28 H 1.08000 * 119.99132 * 0.02567 * 15 14 13 29 29 H 1.07998 * 119.91675 * 180.02562 * 16 15 14 30 30 H 1.08001 * 120.00880 * 179.97438 * 19 17 16 31 31 H 0.96994 * 120.00087 * 180.25172 * 21 20 19 32 32 H 0.97003 * 119.99559 * 0.24261 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0861 0.5391 7 6 4.2304 -1.1936 2.3577 8 7 3.5765 -1.8379 3.2993 9 14 6.0922 -1.0624 2.4360 10 1 6.4855 0.3683 2.4957 11 1 6.5871 -1.7623 3.6485 12 1 6.6838 -1.6884 1.2263 13 16 2.1346 -0.8551 -1.4812 14 6 1.7177 0.2596 -2.7804 15 6 1.1919 1.5081 -2.4831 16 6 0.8647 2.3817 -3.5036 17 6 1.0611 2.0141 -4.8240 18 9 0.7401 2.8720 -5.8172 19 6 1.5852 0.7694 -5.1289 20 6 1.9208 -0.1094 -4.1103 21 7 2.4572 -1.3659 -4.4158 22 1 -0.3634 -1.0225 0.1025 23 1 -0.3633 0.6001 0.8343 24 1 -0.3634 0.4225 -0.9368 25 1 1.7515 -1.7715 1.2056 26 1 1.6055 -0.2618 2.1369 27 1 4.0609 -2.2448 4.0348 28 1 1.0379 1.7979 -1.4542 29 1 0.4557 3.3536 -3.2702 30 1 1.7370 0.4850 -6.1596 31 1 2.6881 -1.9811 -3.7024 32 1 2.5978 -1.6212 -5.3410 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695838884.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:09 Heat of formation + Delta-G solvation = -38.145628 kcal Electronic energy + Delta-G solvation = -16148.580534 eV Core-core repulsion = 13341.908347 eV Total energy + Delta-G solvation = -2806.672186 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.75881 -38.95285 -34.97205 -34.12327 -32.18448 -30.45941 -28.58172 -27.48500 -23.37266 -22.89819 -22.40274 -20.52754 -17.77597 -17.20291 -16.92407 -16.38582 -15.47201 -15.32787 -15.12231 -14.87717 -14.53953 -13.89761 -13.23437 -13.05310 -12.86888 -12.69638 -12.39001 -11.85136 -11.61749 -11.27881 -10.92914 -10.88087 -10.61202 -10.46393 -10.40043 -9.56783 -9.43057 -9.23325 -9.12573 -8.41222 -7.94018 -6.58975 -6.06244 -4.08091 1.25670 1.55408 2.14252 3.12774 3.32339 3.36319 3.39853 3.73893 3.83264 4.42720 4.54689 4.84867 5.15399 5.31127 5.42549 5.57487 5.66059 5.66446 5.90885 5.92686 6.03979 6.25227 6.28945 6.38478 6.53450 6.63625 6.89102 7.42996 7.44981 7.52277 7.78301 7.90675 8.27214 8.96369 9.56124 11.04920 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.029604 B = 0.005344 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.590086 B = 5238.631891 C = 5489.877620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.059 4.059 3 H 0.082 0.918 4 C 0.040 3.960 5 C -0.519 4.519 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.275 1.275 13 S -0.096 6.096 14 C -0.164 4.164 15 C -0.066 4.066 16 C -0.192 4.192 17 C 0.124 3.876 18 F -0.146 7.146 19 C -0.224 4.224 20 C 0.256 3.744 21 N -0.866 5.866 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.027 0.973 26 H 0.036 0.964 27 H 0.262 0.738 28 H 0.137 0.863 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.407 0.593 32 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.347 3.871 -13.758 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 H 0.100 0.900 4 C 0.001 3.999 5 C -0.558 4.558 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.201 1.201 13 S 0.150 5.850 14 C -0.281 4.281 15 C -0.091 4.091 16 C -0.215 4.215 17 C 0.101 3.899 18 F -0.124 7.124 19 C -0.250 4.250 20 C 0.144 3.856 21 N -0.406 5.406 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.237 0.763 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.761 2.668 -13.535 14.594 hybrid contribution 0.530 1.127 -0.100 1.250 sum -4.231 3.795 -13.635 14.772 Atomic orbital electron populations 1.22189 0.94740 1.02752 1.01191 1.23693 0.96643 1.02140 0.96258 0.89952 1.19032 0.96561 0.95601 0.88675 1.21192 0.91433 1.34832 1.08313 0.91922 1.24972 0.98465 0.95142 0.95563 1.69939 1.35750 1.35740 1.12054 0.86643 0.85650 0.78290 0.77406 1.20224 1.21350 1.20085 1.85456 1.74842 1.27345 0.97365 1.21694 1.09866 1.00298 0.96247 1.20927 0.96998 0.91637 0.99544 1.20754 1.08336 1.01672 0.90724 1.17257 1.00051 0.87865 0.84683 1.91456 1.90679 1.69438 1.60854 1.20249 1.11426 0.94437 0.98887 1.16924 0.91971 0.86004 0.90673 1.42579 1.71906 1.15404 1.10730 0.91830 0.91962 0.93095 0.95501 0.94554 0.92855 0.84572 0.85263 0.85127 0.76252 0.77419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.71 37.16 0.32 -2.09 16 2 C -0.06 -1.14 1.98 -26.73 -0.05 -1.19 16 3 H 0.08 1.58 6.83 -51.93 -0.35 1.23 16 4 C 0.04 0.96 4.45 -27.88 -0.12 0.83 16 5 C -0.52 -13.97 8.53 -34.44 -0.29 -14.26 16 6 H 0.06 1.67 7.60 -52.49 -0.40 1.27 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.04 13.29 55.43 0.74 -25.31 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 S -0.10 -1.77 19.13 -107.50 -2.06 -3.83 16 14 C -0.16 -2.65 5.98 -38.95 -0.23 -2.89 16 15 C -0.07 -0.99 8.04 -39.41 -0.32 -1.31 16 16 C -0.19 -2.65 10.02 -39.49 -0.40 -3.05 16 17 C 0.12 1.73 7.29 -39.42 -0.29 1.44 16 18 F -0.15 -1.99 17.26 2.25 0.04 -1.95 16 19 C -0.22 -2.97 9.87 -39.35 -0.39 -3.36 16 20 C 0.26 3.67 6.76 -83.51 -0.56 3.11 16 21 N -0.87 -10.37 9.04 32.54 0.29 -10.08 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.74 6.14 -51.93 -0.32 0.42 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.14 2.00 4.99 -52.49 -0.26 1.73 16 29 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.41 5.15 7.37 -40.82 -0.30 4.85 16 32 H 0.40 3.52 8.85 -40.82 -0.36 3.16 16 LS Contribution 285.45 15.07 4.30 4.30 Total: -1.00 -29.01 285.45 -7.80 -36.82 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.67 Total: 4.90 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -2.43 Total: -21.19 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 1.03 Total: -35.38 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.06 Total: -3.83 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.01 -7.80 -36.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838884.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.330 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds