Wall clock time and date at job start Mon Mar 30 2020 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46890 * 2 1 4 4 C 1.53001 * 109.47125 * 240.00008 * 2 1 3 5 5 C 1.50699 * 109.46806 * 175.80636 * 4 2 1 6 6 H 1.07994 * 120.00233 * 4.47287 * 5 4 2 7 7 C 1.37878 * 119.99702 * 184.47142 * 5 4 2 8 8 N 1.31514 * 120.00386 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99957 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46977 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46965 * 120.00090 * 9 7 5 12 12 H 1.48497 * 109.47507 * 240.00399 * 9 7 5 13 13 O 1.42899 * 109.46971 * 120.00011 * 2 1 3 14 14 C 1.36041 * 117.00067 * 277.51082 * 13 2 1 15 15 C 1.39303 * 120.08631 * 94.78253 * 14 13 2 16 16 N 1.39973 * 120.08272 * 0.02562 * 15 14 13 17 17 C 1.38715 * 119.83742 * 179.74881 * 15 14 13 18 18 C 1.38260 * 119.99560 * 0.54826 * 17 15 14 19 19 C 1.38212 * 120.16678 * 359.45422 * 18 17 15 20 20 C 1.38416 * 120.16756 * 0.27366 * 19 18 17 21 21 Cl 1.73605 * 120.00137 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.47371 * 300.00444 * 1 2 3 23 23 H 1.09002 * 109.47362 * 60.00000 * 1 2 3 24 24 H 1.08998 * 109.47123 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47058 * 295.80405 * 4 2 1 26 26 H 1.09000 * 109.47013 * 55.81038 * 4 2 1 27 27 H 0.97000 * 120.00158 * 180.02562 * 8 7 5 28 28 H 0.97001 * 119.99927 * 7.01963 * 16 15 14 29 29 H 0.97001 * 119.99999 * 187.03455 * 16 15 14 30 30 H 1.07999 * 120.00075 * 180.28357 * 17 15 14 31 31 H 1.07995 * 119.91453 * 179.72136 * 18 17 15 32 32 H 1.07996 * 119.91638 * 180.29389 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5434 -0.6319 -1.3022 6 1 4.0863 -0.1762 -0.4874 7 6 4.2257 -1.1319 -2.3910 8 7 3.5646 -1.6864 -3.3835 9 14 6.0892 -1.0205 -2.4571 10 1 6.5894 -0.3570 -1.2262 11 1 6.6638 -2.3867 -2.5508 12 1 6.4961 -0.2297 -3.6463 13 8 2.0063 -0.6736 1.1668 14 6 2.0628 0.0495 2.3177 15 6 1.0045 0.0059 3.2225 16 7 -0.1195 -0.7825 2.9500 17 6 1.0698 0.7413 4.3968 18 6 2.1784 1.5239 4.6616 19 6 3.2284 1.5672 3.7639 20 6 3.1729 0.8318 2.5926 21 17 4.4939 0.8900 1.4677 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.7394 -1.7683 -1.2124 26 1 1.6166 -0.2526 -2.1376 27 1 4.0447 -2.0385 -4.1493 28 1 -0.1207 -1.3770 2.1835 29 1 -0.8974 -0.7342 3.5275 30 1 0.2528 0.7058 5.1023 31 1 2.2258 2.0994 5.5742 32 1 4.0944 2.1762 3.9770 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695904761.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:02 Heat of formation + Delta-G solvation = -28.602230 kcal Electronic energy + Delta-G solvation = -17028.847543 eV Core-core repulsion = 14208.172693 eV Total energy + Delta-G solvation = -2820.674849 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.78637 -37.12452 -36.02375 -34.10360 -33.29174 -31.47568 -29.44669 -28.06624 -27.33687 -23.45843 -22.28817 -21.89150 -20.16130 -17.69023 -16.99373 -16.44823 -16.23479 -15.00323 -14.62619 -14.51565 -14.15873 -13.98528 -13.26034 -12.81866 -12.45765 -11.89557 -11.84066 -11.70936 -11.54755 -11.46932 -11.25730 -10.81602 -10.67214 -10.54763 -10.17590 -10.07207 -9.45593 -8.96931 -8.67789 -8.30489 -8.21059 -7.33844 -5.89923 -3.87494 1.36695 1.63220 2.65887 3.37300 3.45003 3.49825 3.74799 4.01809 4.42131 4.55952 5.02158 5.33819 5.44417 5.47942 5.63408 5.73374 5.76117 5.89006 6.02673 6.19580 6.35508 6.43426 6.56066 6.66419 6.77652 6.87653 7.45714 7.65016 7.72521 7.89512 8.12625 8.31754 8.55740 9.21013 9.75021 11.22577 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.008006 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.797913 B = 3496.475001 C = 4405.695960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.097 3.903 3 H 0.051 0.949 4 C 0.027 3.973 5 C -0.508 4.508 6 H 0.079 0.921 7 C 0.054 3.946 8 N -0.903 5.903 9 Si 0.882 3.118 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 O -0.305 6.305 14 C 0.044 3.956 15 C 0.207 3.793 16 N -0.870 5.870 17 C -0.194 4.194 18 C -0.078 4.078 19 C -0.165 4.165 20 C -0.019 4.019 21 Cl -0.035 7.035 22 H 0.048 0.952 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.022 0.978 26 H 0.036 0.964 27 H 0.257 0.743 28 H 0.406 0.594 29 H 0.395 0.605 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.244 5.747 14.646 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.042 3.958 3 H 0.069 0.931 4 C -0.010 4.010 5 C -0.546 4.546 6 H 0.096 0.904 7 C -0.146 4.146 8 N -0.544 5.544 9 Si 0.711 3.289 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 O -0.221 6.221 14 C -0.006 4.006 15 C 0.101 3.899 16 N -0.411 5.411 17 C -0.217 4.217 18 C -0.097 4.097 19 C -0.185 4.185 20 C -0.047 4.047 21 Cl -0.006 7.006 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.237 0.763 29 H 0.223 0.777 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.015 5.491 14.326 16.479 hybrid contribution 0.750 -0.028 -0.329 0.820 sum -5.265 5.463 13.997 15.921 Atomic orbital electron populations 1.22524 0.98127 1.01727 1.01315 1.22765 0.90758 0.96675 0.85628 0.93108 1.19243 0.96956 0.95941 0.88860 1.21633 0.91667 1.37223 1.04060 0.90355 1.24975 0.97874 0.95816 0.95925 1.69968 1.35064 1.40832 1.08487 0.86670 0.86702 0.77715 0.77845 1.19707 1.21111 1.21232 1.86288 1.85017 1.36487 1.14351 1.18037 0.92781 0.99197 0.90572 1.17961 0.87009 0.91678 0.93273 1.42524 1.15574 1.48020 1.34949 1.20501 1.00842 1.03474 0.96891 1.20716 0.92631 0.97764 0.98545 1.20734 1.00680 1.03059 0.94070 1.21385 0.91426 0.98543 0.93356 1.98430 1.45414 1.97181 1.59528 0.93312 0.91883 0.92465 0.95986 0.94610 0.93340 0.76287 0.77717 0.85932 0.85618 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 8.15 37.16 0.30 -2.74 16 2 C 0.10 2.04 2.64 -26.73 -0.07 1.97 16 3 H 0.05 1.11 7.99 -51.93 -0.42 0.70 16 4 C 0.03 0.69 4.69 -27.88 -0.13 0.56 16 5 C -0.51 -14.36 8.86 -34.44 -0.31 -14.66 16 6 H 0.08 2.12 4.53 -52.49 -0.24 1.88 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 9 Si 0.88 22.49 29.54 -169.99 -5.02 17.47 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 O -0.30 -6.41 8.21 -19.87 -0.16 -6.58 16 14 C 0.04 0.80 5.47 -39.07 -0.21 0.58 16 15 C 0.21 3.04 6.32 -83.57 -0.53 2.51 16 16 N -0.87 -10.52 7.87 32.51 0.26 -10.27 16 17 C -0.19 -2.38 9.90 -39.40 -0.39 -2.77 16 18 C -0.08 -0.93 10.04 -39.58 -0.40 -1.33 16 19 C -0.16 -2.34 9.82 -39.53 -0.39 -2.73 16 20 C -0.02 -0.34 6.33 -39.40 -0.25 -0.59 16 21 Cl -0.03 -0.70 25.56 -51.86 -1.33 -2.02 16 22 H 0.05 0.74 6.65 -51.93 -0.35 0.39 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.06 0.92 7.80 -51.93 -0.41 0.52 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.41 5.34 6.81 -40.82 -0.28 5.07 16 29 H 0.39 3.47 8.85 -40.82 -0.36 3.11 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 283.00 15.07 4.26 4.26 Total: -1.00 -31.51 283.00 -7.43 -38.95 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.71 Total: 2.60 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.47 Total: -17.72 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.99 Total: -36.97 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.16 Total: -6.58 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.33 Total: -2.02 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.51 -7.43 -38.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695904761.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.343 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds