Wall clock time and date at job start Mon Mar 30 2020 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46890 * 2 1 4 4 C 1.53001 * 109.47125 * 240.00008 * 2 1 3 5 5 C 1.50699 * 109.46806 * 175.80636 * 4 2 1 6 6 H 1.07994 * 120.00233 * 4.47287 * 5 4 2 7 7 C 1.37878 * 119.99702 * 184.47142 * 5 4 2 8 8 N 1.31514 * 120.00386 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99957 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46977 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46965 * 120.00090 * 9 7 5 12 12 H 1.48497 * 109.47507 * 240.00399 * 9 7 5 13 13 O 1.42899 * 109.46971 * 120.00011 * 2 1 3 14 14 C 1.36041 * 117.00067 * 277.51082 * 13 2 1 15 15 C 1.39303 * 120.08631 * 94.78253 * 14 13 2 16 16 N 1.39973 * 120.08272 * 0.02562 * 15 14 13 17 17 C 1.38715 * 119.83742 * 179.74881 * 15 14 13 18 18 C 1.38260 * 119.99560 * 0.54826 * 17 15 14 19 19 C 1.38212 * 120.16678 * 359.45422 * 18 17 15 20 20 C 1.38416 * 120.16756 * 0.27366 * 19 18 17 21 21 Cl 1.73605 * 120.00137 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.47371 * 300.00444 * 1 2 3 23 23 H 1.09002 * 109.47362 * 60.00000 * 1 2 3 24 24 H 1.08998 * 109.47123 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47058 * 295.80405 * 4 2 1 26 26 H 1.09000 * 109.47013 * 55.81038 * 4 2 1 27 27 H 0.97000 * 120.00158 * 180.02562 * 8 7 5 28 28 H 0.97001 * 119.99927 * 7.01963 * 16 15 14 29 29 H 0.97001 * 119.99999 * 187.03455 * 16 15 14 30 30 H 1.07999 * 120.00075 * 180.28357 * 17 15 14 31 31 H 1.07995 * 119.91453 * 179.72136 * 18 17 15 32 32 H 1.07996 * 119.91638 * 180.29389 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5434 -0.6319 -1.3022 6 1 4.0863 -0.1762 -0.4874 7 6 4.2257 -1.1319 -2.3910 8 7 3.5646 -1.6864 -3.3835 9 14 6.0892 -1.0205 -2.4571 10 1 6.5894 -0.3570 -1.2262 11 1 6.6638 -2.3867 -2.5508 12 1 6.4961 -0.2297 -3.6463 13 8 2.0063 -0.6736 1.1668 14 6 2.0628 0.0495 2.3177 15 6 1.0045 0.0059 3.2225 16 7 -0.1195 -0.7825 2.9500 17 6 1.0698 0.7413 4.3968 18 6 2.1784 1.5239 4.6616 19 6 3.2284 1.5672 3.7639 20 6 3.1729 0.8318 2.5926 21 17 4.4939 0.8900 1.4677 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.7394 -1.7683 -1.2124 26 1 1.6166 -0.2526 -2.1376 27 1 4.0447 -2.0385 -4.1493 28 1 -0.1207 -1.3770 2.1835 29 1 -0.8974 -0.7342 3.5275 30 1 0.2528 0.7058 5.1023 31 1 2.2258 2.0994 5.5742 32 1 4.0944 2.1762 3.9770 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695904761.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:02 Heat of formation + Delta-G solvation = -48.849554 kcal Electronic energy + Delta-G solvation = -17029.725532 eV Core-core repulsion = 14208.172693 eV Total energy + Delta-G solvation = -2821.552839 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.02834 -38.50516 -37.38452 -35.32132 -35.13385 -33.28084 -30.59974 -29.35952 -29.07042 -25.31042 -23.60496 -23.07730 -21.78812 -18.97910 -18.50144 -18.01175 -17.57056 -16.73459 -16.08490 -15.76582 -15.53383 -15.24038 -14.76106 -14.32298 -13.89889 -13.75218 -13.32500 -13.26045 -12.93722 -12.84552 -12.75916 -12.63383 -12.41875 -12.38334 -11.81485 -11.31845 -11.18459 -10.79174 -10.54545 -10.46570 -9.45939 -8.40242 -8.13580 -6.16488 0.21081 0.54026 1.32258 1.33825 1.38130 1.47314 2.42699 2.58573 3.03072 3.09700 3.24028 4.05934 4.20218 4.25444 4.38150 4.44185 4.49702 4.58440 4.71629 4.87413 5.13803 5.18378 5.20574 5.34676 5.51642 5.52426 5.61260 5.81814 5.91145 6.35843 6.44810 6.89415 7.01340 7.03228 7.49588 8.99733 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.008006 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.797913 B = 3496.475001 C = 4405.695960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 H 0.037 0.963 4 C 0.030 3.970 5 C -0.522 4.522 6 H 0.089 0.911 7 C -0.001 4.001 8 N -0.938 5.938 9 Si 0.940 3.060 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.278 1.278 13 O -0.325 6.325 14 C -0.002 4.002 15 C 0.206 3.794 16 N -0.860 5.860 17 C -0.183 4.183 18 C -0.060 4.060 19 C -0.170 4.170 20 C -0.039 4.039 21 Cl -0.072 7.072 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.063 0.937 25 H -0.005 1.005 26 H 0.015 0.985 27 H 0.258 0.742 28 H 0.401 0.599 29 H 0.413 0.587 30 H 0.162 0.838 31 H 0.170 0.830 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.062 6.817 17.602 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.052 3.948 3 H 0.055 0.945 4 C -0.007 4.007 5 C -0.560 4.560 6 H 0.107 0.893 7 C -0.197 4.197 8 N -0.581 5.581 9 Si 0.766 3.234 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.203 1.203 13 O -0.242 6.242 14 C -0.051 4.051 15 C 0.099 3.901 16 N -0.401 5.401 17 C -0.206 4.206 18 C -0.079 4.079 19 C -0.191 4.191 20 C -0.067 4.067 21 Cl -0.043 7.043 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.014 0.986 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.231 0.769 29 H 0.244 0.756 30 H 0.180 0.820 31 H 0.187 0.813 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.860 6.565 17.312 19.745 hybrid contribution 0.925 -0.330 -1.077 1.457 sum -5.935 6.235 16.235 18.376 Atomic orbital electron populations 1.22376 0.94885 1.02567 1.02537 1.22367 0.93132 0.94745 0.84585 0.94513 1.19093 0.96036 0.94653 0.90933 1.22196 0.93276 1.36349 1.04192 0.89278 1.25774 1.02250 0.95826 0.95837 1.70087 1.36745 1.42085 1.09156 0.85761 0.81639 0.77879 0.78149 1.19164 1.20668 1.20343 1.86224 1.85577 1.37286 1.15116 1.18359 0.94765 1.01545 0.90417 1.18103 0.86636 0.92014 0.93364 1.42511 1.15591 1.47083 1.34962 1.20986 1.01853 1.01629 0.96102 1.21235 0.91071 0.96627 0.98941 1.21019 1.02237 1.02613 0.93231 1.21645 0.90573 1.00360 0.94103 1.98399 1.47143 1.97404 1.61356 0.91083 0.91530 0.91820 0.98633 0.96690 0.93275 0.76909 0.75613 0.82040 0.81306 0.83947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.56 8.15 71.98 0.59 -4.97 16 2 C 0.11 4.63 2.64 30.59 0.08 4.71 16 3 H 0.04 1.66 7.99 -2.38 -0.02 1.64 16 4 C 0.03 1.61 4.69 29.85 0.14 1.75 16 5 C -0.52 -30.51 8.86 25.60 0.23 -30.29 16 6 H 0.09 4.96 4.53 -2.91 -0.01 4.94 16 7 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 8 N -0.94 -58.77 13.29 21.45 0.28 -58.49 16 9 Si 0.94 47.06 29.54 68.60 2.03 49.09 16 10 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 13 O -0.32 -13.87 8.21 -94.01 -0.77 -14.64 16 14 C 0.00 -0.06 5.47 22.60 0.12 0.07 16 15 C 0.21 5.49 6.32 38.21 0.24 5.73 16 16 N -0.86 -18.43 7.87 -51.06 -0.40 -18.83 16 17 C -0.18 -3.61 9.90 22.39 0.22 -3.38 16 18 C -0.06 -1.15 10.04 22.27 0.22 -0.93 16 19 C -0.17 -4.41 9.82 22.31 0.22 -4.19 16 20 C -0.04 -1.36 6.33 22.39 0.14 -1.22 16 21 Cl -0.07 -2.92 25.56 -2.72 -0.07 -2.99 16 22 H 0.07 2.04 6.65 -2.39 -0.02 2.02 16 23 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.06 2.03 7.80 -2.39 -0.02 2.01 16 25 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.01 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.40 9.86 6.81 -92.71 -0.63 9.23 16 29 H 0.41 5.71 8.85 -92.71 -0.82 4.88 16 30 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 31 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -70.94 283.00 3.44 -67.50 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -0.30 Total: 10.68 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 2.67 Total: -32.31 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -0.12 Total: -77.32 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.77 Total: -14.64 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 17 Polarization: -2.92 SS G_CDS: -0.07 Total: -2.99 kcal Total: -70.94 3.44 -67.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695904761.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.648 kcal (2) G-P(sol) polarization free energy of solvation -70.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds