Wall clock time and date at job start Mon Mar 30 2020 06:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47239 * 2 1 4 4 C 1.53004 * 109.46797 * 119.99534 * 2 1 3 5 5 C 1.50701 * 109.47182 * 184.11765 * 4 2 1 6 6 H 1.07999 * 119.99826 * 5.51116 * 5 4 2 7 7 C 1.37874 * 120.00199 * 185.78682 * 5 4 2 8 8 N 1.31508 * 120.00130 * 179.72471 * 7 5 4 9 9 Si 1.86803 * 119.99700 * 359.72506 * 7 5 4 10 10 H 1.48496 * 109.47061 * 90.00309 * 9 7 5 11 11 H 1.48508 * 109.46852 * 210.00133 * 9 7 5 12 12 H 1.48499 * 109.47287 * 329.99669 * 9 7 5 13 13 O 1.42898 * 109.47394 * 239.99563 * 2 1 3 14 14 C 1.36039 * 116.99863 * 81.78416 * 13 2 1 15 15 C 1.39308 * 120.08182 * 87.31290 * 14 13 2 16 16 N 1.39965 * 120.08446 * 359.95540 * 15 14 13 17 17 C 1.38712 * 119.83161 * 179.97438 * 15 14 13 18 18 C 1.38252 * 120.00169 * 0.02562 * 17 15 14 19 19 C 1.38212 * 120.16952 * 359.97438 * 18 17 15 20 20 C 1.38422 * 120.16636 * 359.74523 * 19 18 17 21 21 Cl 1.73594 * 120.00155 * 180.25395 * 20 19 18 22 22 H 1.08995 * 109.47239 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47223 * 300.00623 * 1 2 3 24 24 H 1.09009 * 109.46834 * 60.00287 * 1 2 3 25 25 H 1.09006 * 109.46949 * 64.11967 * 4 2 1 26 26 H 1.09000 * 109.47112 * 304.11732 * 4 2 1 27 27 H 0.97003 * 120.00207 * 179.97438 * 8 7 5 28 28 H 0.97000 * 119.99767 * 10.99525 * 16 15 14 29 29 H 0.96998 * 120.00207 * 190.99957 * 16 15 14 30 30 H 1.08002 * 119.99647 * 179.97438 * 17 15 14 31 31 H 1.08007 * 119.91654 * 179.97438 * 18 17 15 32 32 H 1.08003 * 119.91820 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5435 -0.6335 1.3015 6 1 4.0754 -0.0409 0.5719 7 6 4.2403 -1.3143 2.2771 8 7 5.5528 -1.2421 2.3193 9 14 3.3202 -2.3392 3.5391 10 1 3.1648 -3.7262 3.0320 11 1 4.0846 -2.3602 4.8121 12 1 1.9798 -1.7457 3.7764 13 8 2.0064 -0.6737 -1.1667 14 6 2.0490 0.0452 -2.3208 15 6 3.1742 0.8070 -2.6279 16 7 4.2633 0.8354 -1.7493 17 6 3.2122 1.5376 -3.8064 18 6 2.1351 1.5090 -4.6726 19 6 1.0187 0.7532 -4.3680 20 6 0.9756 0.0169 -3.1967 21 17 -0.4260 -0.9361 -2.8216 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.7381 -1.7680 1.2133 26 1 1.6176 -0.2516 2.1377 27 1 6.0430 -1.7207 3.0060 28 1 4.3071 0.2082 -1.0106 29 1 4.9743 1.4824 -1.8789 30 1 4.0831 2.1294 -4.0469 31 1 2.1661 2.0787 -5.5896 32 1 0.1797 0.7335 -5.0478 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695904762.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:05 Heat of formation + Delta-G solvation = -25.890877 kcal Electronic energy + Delta-G solvation = -17033.318651 eV Core-core repulsion = 14212.761374 eV Total energy + Delta-G solvation = -2820.557276 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.75883 -37.16706 -36.24841 -33.92865 -33.41195 -31.67415 -29.46455 -28.06943 -27.86150 -23.28440 -22.37826 -21.67315 -20.20315 -17.53319 -17.21604 -16.64809 -16.28867 -15.00531 -14.64774 -14.43971 -14.15912 -13.94221 -13.20406 -12.81792 -12.63314 -12.29050 -12.12875 -11.81614 -11.71968 -11.52236 -11.30976 -11.01585 -10.56958 -10.38192 -10.12490 -9.89902 -9.68247 -9.31429 -9.00931 -8.58507 -8.29668 -7.17902 -6.10097 -4.07348 1.36277 1.69485 2.43215 3.29923 3.37089 3.39883 3.76841 4.27851 4.39822 4.44998 5.07118 5.26126 5.37767 5.48015 5.65942 5.70460 5.80258 5.84169 6.02024 6.25211 6.32914 6.43510 6.58673 6.59759 6.71062 6.82488 7.12728 7.20444 7.67739 7.81729 8.21398 8.28967 8.50426 8.93891 9.52213 11.02481 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.025858 B = 0.007375 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.558783 B = 3795.680980 C = 4648.872555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.011 4.011 5 C -0.514 4.514 6 H 0.076 0.924 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.880 3.120 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.267 1.267 13 O -0.302 6.302 14 C 0.036 3.964 15 C 0.219 3.781 16 N -0.862 5.862 17 C -0.197 4.197 18 C -0.072 4.072 19 C -0.172 4.172 20 C -0.010 4.010 21 Cl -0.066 7.066 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.025 0.975 26 H 0.032 0.968 27 H 0.263 0.737 28 H 0.422 0.578 29 H 0.395 0.605 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 5.406 -11.292 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.050 3.950 3 H 0.070 0.930 4 C -0.048 4.048 5 C -0.552 4.552 6 H 0.094 0.906 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.708 3.292 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.191 1.191 13 O -0.219 6.219 14 C -0.014 4.014 15 C 0.109 3.891 16 N -0.405 5.405 17 C -0.220 4.220 18 C -0.091 4.091 19 C -0.194 4.194 20 C -0.038 4.038 21 Cl -0.037 7.037 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.260 0.740 29 H 0.222 0.778 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.854 5.035 -11.078 14.483 hybrid contribution -0.211 -0.447 0.950 1.071 sum -8.064 4.588 -10.127 13.735 Atomic orbital electron populations 1.22585 0.97501 1.02305 1.01334 1.22440 0.91442 0.96025 0.85111 0.93027 1.19716 0.97874 0.96316 0.90919 1.21005 0.89308 1.30585 1.14328 0.90599 1.24979 0.94751 0.96135 0.97474 1.69882 1.06111 1.43274 1.34812 0.86769 0.80257 0.81198 0.80994 1.20217 1.21480 1.19144 1.86294 1.84796 1.36691 1.14112 1.17990 0.92025 1.00729 0.90681 1.18110 0.88039 0.92771 0.90136 1.43135 1.21892 1.41901 1.33531 1.20603 1.00863 1.06108 0.94465 1.20708 0.92273 0.97554 0.98608 1.20605 1.00289 1.01413 0.97055 1.21102 0.88459 0.97269 0.96969 1.98338 1.39970 1.71002 1.94358 0.92105 0.92348 0.92779 0.95668 0.94960 0.92690 0.74026 0.77777 0.85739 0.85584 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.02 37.16 0.30 -2.85 16 2 C 0.11 2.17 2.73 -26.73 -0.07 2.10 16 3 H 0.05 1.08 8.00 -51.93 -0.42 0.66 16 4 C -0.01 -0.26 3.76 -27.88 -0.10 -0.37 16 5 C -0.51 -13.89 9.41 -34.44 -0.32 -14.21 16 6 H 0.08 2.08 5.05 -52.49 -0.26 1.81 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 9 Si 0.88 21.45 27.36 -169.99 -4.65 16.80 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.24 6.71 56.52 0.38 -5.86 16 13 O -0.30 -6.43 8.26 -19.87 -0.16 -6.59 16 14 C 0.04 0.67 5.49 -39.06 -0.21 0.45 16 15 C 0.22 3.72 6.77 -83.57 -0.57 3.16 16 16 N -0.86 -15.03 9.05 32.51 0.29 -14.73 16 17 C -0.20 -2.70 9.90 -39.40 -0.39 -3.09 16 18 C -0.07 -0.89 10.04 -39.59 -0.40 -1.29 16 19 C -0.17 -2.34 9.82 -39.52 -0.39 -2.72 16 20 C -0.01 -0.17 5.92 -39.39 -0.23 -0.40 16 21 Cl -0.07 -1.02 25.28 -51.86 -1.31 -2.33 16 22 H 0.06 1.07 7.98 -51.93 -0.41 0.65 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.89 5.98 -51.92 -0.31 0.58 16 25 H 0.02 0.61 7.26 -51.93 -0.38 0.23 16 26 H 0.03 0.75 7.59 -51.93 -0.39 0.35 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.42 8.81 5.31 -40.82 -0.22 8.60 16 29 H 0.39 5.67 8.86 -40.82 -0.36 5.31 16 30 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 32 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 278.82 15.07 4.20 4.20 Total: -1.00 -29.35 278.82 -6.95 -36.30 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -3.60 Total: 9.66 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -2.49 Total: -17.42 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 1.07 Total: -40.62 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.16 Total: -6.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.65 Total: 16.80 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.31 Total: -2.33 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.35 -6.95 -36.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695904762.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.412 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds