Wall clock time and date at job start Mon Mar 30 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47239 * 2 1 4 4 C 1.53004 * 109.46797 * 119.99534 * 2 1 3 5 5 C 1.50701 * 109.47182 * 184.11765 * 4 2 1 6 6 H 1.07999 * 119.99826 * 5.51116 * 5 4 2 7 7 C 1.37874 * 120.00199 * 185.78682 * 5 4 2 8 8 N 1.31508 * 120.00130 * 179.72471 * 7 5 4 9 9 Si 1.86803 * 119.99700 * 359.72506 * 7 5 4 10 10 H 1.48496 * 109.47061 * 90.00309 * 9 7 5 11 11 H 1.48508 * 109.46852 * 210.00133 * 9 7 5 12 12 H 1.48499 * 109.47287 * 329.99669 * 9 7 5 13 13 O 1.42898 * 109.47394 * 239.99563 * 2 1 3 14 14 C 1.36039 * 116.99863 * 81.78416 * 13 2 1 15 15 C 1.39308 * 120.08182 * 87.31290 * 14 13 2 16 16 N 1.39965 * 120.08446 * 359.95540 * 15 14 13 17 17 C 1.38712 * 119.83161 * 179.97438 * 15 14 13 18 18 C 1.38252 * 120.00169 * 0.02562 * 17 15 14 19 19 C 1.38212 * 120.16952 * 359.97438 * 18 17 15 20 20 C 1.38422 * 120.16636 * 359.74523 * 19 18 17 21 21 Cl 1.73594 * 120.00155 * 180.25395 * 20 19 18 22 22 H 1.08995 * 109.47239 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47223 * 300.00623 * 1 2 3 24 24 H 1.09009 * 109.46834 * 60.00287 * 1 2 3 25 25 H 1.09006 * 109.46949 * 64.11967 * 4 2 1 26 26 H 1.09000 * 109.47112 * 304.11732 * 4 2 1 27 27 H 0.97003 * 120.00207 * 179.97438 * 8 7 5 28 28 H 0.97000 * 119.99767 * 10.99525 * 16 15 14 29 29 H 0.96998 * 120.00207 * 190.99957 * 16 15 14 30 30 H 1.08002 * 119.99647 * 179.97438 * 17 15 14 31 31 H 1.08007 * 119.91654 * 179.97438 * 18 17 15 32 32 H 1.08003 * 119.91820 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5435 -0.6335 1.3015 6 1 4.0754 -0.0409 0.5719 7 6 4.2403 -1.3143 2.2771 8 7 5.5528 -1.2421 2.3193 9 14 3.3202 -2.3392 3.5391 10 1 3.1648 -3.7262 3.0320 11 1 4.0846 -2.3602 4.8121 12 1 1.9798 -1.7457 3.7764 13 8 2.0064 -0.6737 -1.1667 14 6 2.0490 0.0452 -2.3208 15 6 3.1742 0.8070 -2.6279 16 7 4.2633 0.8354 -1.7493 17 6 3.2122 1.5376 -3.8064 18 6 2.1351 1.5090 -4.6726 19 6 1.0187 0.7532 -4.3680 20 6 0.9756 0.0169 -3.1967 21 17 -0.4260 -0.9361 -2.8216 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.7381 -1.7680 1.2133 26 1 1.6176 -0.2516 2.1377 27 1 6.0430 -1.7207 3.0060 28 1 4.3071 0.2082 -1.0106 29 1 4.9743 1.4824 -1.8789 30 1 4.0831 2.1294 -4.0469 31 1 2.1661 2.0787 -5.5896 32 1 0.1797 0.7335 -5.0478 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695904762.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:04 Heat of formation + Delta-G solvation = -44.292769 kcal Electronic energy + Delta-G solvation = -17034.116617 eV Core-core repulsion = 14212.761374 eV Total energy + Delta-G solvation = -2821.355242 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.04306 -38.54563 -37.44753 -35.31381 -35.14892 -33.48041 -30.66399 -29.73755 -29.20859 -25.02092 -23.59317 -23.02693 -21.81629 -19.07016 -18.87316 -17.91626 -17.75481 -16.68655 -15.99235 -15.81039 -15.57219 -15.22615 -14.79043 -14.49796 -14.06221 -13.88115 -13.56842 -13.48605 -12.99200 -12.89036 -12.61310 -12.59193 -12.31039 -11.87250 -11.60477 -11.42816 -11.28205 -11.19023 -10.72983 -10.57796 -9.48340 -8.43628 -8.24132 -6.24732 0.18885 0.54407 1.23944 1.36685 1.38227 1.48199 2.37907 2.56328 3.01314 3.08562 3.16520 4.05538 4.12242 4.23373 4.35923 4.41820 4.48550 4.52241 4.69155 4.86118 5.01464 5.16516 5.19667 5.27616 5.31374 5.40420 5.50858 5.67170 5.80819 6.27053 6.51410 6.71862 6.91933 6.99778 7.37358 8.90450 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.025858 B = 0.007375 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.558783 B = 3795.680980 C = 4648.872555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 H 0.040 0.960 4 C -0.011 4.011 5 C -0.518 4.518 6 H 0.063 0.937 7 C 0.011 3.989 8 N -0.944 5.944 9 Si 0.937 3.063 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.249 1.249 13 O -0.326 6.326 14 C -0.004 4.004 15 C 0.194 3.806 16 N -0.871 5.871 17 C -0.190 4.190 18 C -0.058 4.058 19 C -0.166 4.166 20 C -0.022 4.022 21 Cl -0.066 7.066 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.019 0.981 26 H 0.040 0.960 27 H 0.263 0.737 28 H 0.404 0.596 29 H 0.404 0.596 30 H 0.151 0.849 31 H 0.171 0.829 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.609 6.260 -12.880 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.054 3.946 3 H 0.058 0.942 4 C -0.048 4.048 5 C -0.556 4.556 6 H 0.081 0.919 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.762 3.238 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.172 1.172 13 O -0.243 6.243 14 C -0.054 4.054 15 C 0.087 3.913 16 N -0.413 5.413 17 C -0.213 4.213 18 C -0.076 4.076 19 C -0.187 4.187 20 C -0.050 4.050 21 Cl -0.037 7.037 22 H 0.077 0.923 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.238 0.762 29 H 0.234 0.766 30 H 0.169 0.831 31 H 0.189 0.811 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.554 5.917 -12.702 16.959 hybrid contribution 0.326 -0.631 1.266 1.452 sum -9.227 5.286 -11.436 15.616 Atomic orbital electron populations 1.22480 0.95015 1.02580 1.02607 1.22241 0.93226 0.94688 0.84420 0.94168 1.19685 0.95681 0.96400 0.93066 1.21455 0.91328 1.29386 1.13450 0.91909 1.25788 0.95460 0.97647 0.99718 1.70012 1.07670 1.44894 1.35983 0.85847 0.79850 0.79508 0.78563 1.20214 1.21201 1.17249 1.86233 1.85320 1.37741 1.15000 1.18325 0.93780 1.02834 0.90438 1.18443 0.87613 0.93922 0.91360 1.43061 1.22850 1.42041 1.33379 1.20994 1.02286 1.04907 0.93107 1.21236 0.90705 0.96317 0.99355 1.21031 1.01529 1.00007 0.96086 1.21300 0.88081 0.97903 0.97671 1.98330 1.39716 1.71170 1.94508 0.92256 0.90803 0.91745 0.96287 0.94210 0.92777 0.76228 0.76631 0.83141 0.81139 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.75 8.02 71.98 0.58 -5.17 16 2 C 0.11 4.55 2.73 30.60 0.08 4.63 16 3 H 0.04 1.72 8.00 -2.39 -0.02 1.70 16 4 C -0.01 -0.52 3.76 29.85 0.11 -0.41 16 5 C -0.52 -28.65 9.41 25.60 0.24 -28.41 16 6 H 0.06 3.58 5.05 -2.91 -0.01 3.57 16 7 C 0.01 0.62 5.47 84.65 0.46 1.08 16 8 N -0.94 -57.43 13.96 21.45 0.30 -57.13 16 9 Si 0.94 44.39 27.36 68.60 1.88 46.27 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.25 -10.95 6.71 99.48 0.67 -10.28 16 13 O -0.33 -14.06 8.26 -94.00 -0.78 -14.83 16 14 C 0.00 -0.16 5.49 22.61 0.12 -0.04 16 15 C 0.19 6.53 6.77 38.21 0.26 6.79 16 16 N -0.87 -31.19 9.05 -51.07 -0.46 -31.65 16 17 C -0.19 -4.70 9.90 22.39 0.22 -4.48 16 18 C -0.06 -1.17 10.04 22.27 0.22 -0.94 16 19 C -0.17 -3.91 9.82 22.31 0.22 -3.69 16 20 C -0.02 -0.68 5.92 22.39 0.13 -0.55 16 21 Cl -0.07 -1.97 25.28 -2.72 -0.07 -2.04 16 22 H 0.06 2.01 7.98 -2.39 -0.02 1.99 16 23 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.06 2.03 5.98 -2.38 -0.01 2.02 16 25 H 0.02 0.91 7.26 -2.38 -0.02 0.89 16 26 H 0.04 1.81 7.59 -2.39 -0.02 1.79 16 27 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.40 17.73 5.31 -92.71 -0.49 17.24 16 29 H 0.40 11.90 8.86 -92.71 -0.82 11.08 16 30 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 31 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -64.62 278.82 3.33 -61.29 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -0.19 Total: 29.28 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 2.66 Total: -31.19 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -0.16 Total: -88.78 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.78 Total: -14.83 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.07 Total: -2.04 kcal Total: -64.62 3.33 -61.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695904762.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.000 kcal (2) G-P(sol) polarization free energy of solvation -64.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds