Wall clock time and date at job start Mon Mar 30 2020 06:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46955 * 2 1 4 4 C 1.52996 * 109.47615 * 120.00150 * 2 1 3 5 5 C 1.50693 * 109.47619 * 184.99840 * 4 2 1 6 6 H 1.08008 * 119.99929 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00357 * 179.72516 * 5 4 2 8 8 N 1.31518 * 120.00034 * 0.27784 * 7 5 4 9 9 Si 1.86799 * 120.00164 * 180.27562 * 7 5 4 10 10 H 1.48498 * 109.46967 * 90.00213 * 9 7 5 11 11 H 1.48496 * 109.47157 * 209.99976 * 9 7 5 12 12 H 1.48495 * 109.47438 * 330.00286 * 9 7 5 13 13 O 1.42895 * 109.46838 * 240.00789 * 2 1 3 14 14 C 1.35993 * 117.00687 * 85.09820 * 13 2 1 15 15 C 1.38713 * 119.97623 * 354.30426 * 14 13 2 16 16 C 1.38126 * 120.04100 * 179.76899 * 15 14 13 17 17 C 1.38831 * 119.98799 * 0.50682 * 16 15 14 18 18 N 1.40019 * 120.01864 * 179.72094 * 17 16 15 19 19 C 1.38932 * 119.95817 * 359.74505 * 17 16 15 20 20 Cl 1.73605 * 120.01912 * 179.97438 * 19 17 16 21 21 C 1.38220 * 119.96170 * 0.02562 * 19 17 16 22 22 H 1.08991 * 109.47086 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.47050 * 299.99623 * 1 2 3 24 24 H 1.08998 * 109.47385 * 59.99156 * 1 2 3 25 25 H 1.09006 * 109.46939 * 64.99597 * 4 2 1 26 26 H 1.09005 * 109.46996 * 305.00102 * 4 2 1 27 27 H 0.96996 * 120.00043 * 180.02562 * 8 7 5 28 28 H 1.08005 * 119.98025 * 359.97438 * 15 14 13 29 29 H 1.07997 * 120.00542 * 180.22913 * 16 15 14 30 30 H 0.97001 * 119.99838 * 180.02562 * 18 17 16 31 31 H 0.97001 * 120.00160 * 0.02620 * 18 17 16 32 32 H 1.07999 * 119.99497 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5420 -0.6149 1.3126 6 1 4.0790 -0.0855 0.5394 7 6 4.2300 -1.1882 2.3608 8 7 3.5761 -1.8326 3.3026 9 14 6.0911 -1.0498 2.4435 10 1 6.4634 0.1757 3.1949 11 1 6.6459 -2.2416 3.1341 12 1 6.6434 -0.9735 1.0672 13 8 2.0063 -0.6735 -1.1668 14 6 2.1145 0.0638 -2.3045 15 6 1.6588 1.3738 -2.3274 16 6 1.7724 2.1253 -3.4807 17 6 2.3333 1.5661 -4.6209 18 7 2.4435 2.3256 -5.7921 19 6 2.7849 0.2524 -4.5992 20 17 3.4860 -0.4486 -6.0243 21 6 2.6746 -0.4964 -3.4427 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.7517 -1.7715 1.2055 26 1 1.6055 -0.2617 2.1369 27 1 4.0602 -2.2356 4.0402 28 1 1.2180 1.8074 -1.4419 29 1 1.4208 3.1463 -3.4968 30 1 2.8351 1.9344 -6.5887 31 1 2.1281 3.2428 -5.8068 32 1 3.0258 -1.5176 -3.4251 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695908458.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:16 Heat of formation + Delta-G solvation = -51.728578 kcal Electronic energy + Delta-G solvation = -16380.179357 eV Core-core repulsion = 13558.501674 eV Total energy + Delta-G solvation = -2821.677683 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.13118 -39.14010 -37.29111 -35.66499 -34.66743 -33.20898 -31.67625 -29.34119 -28.64526 -25.26066 -24.27681 -23.17467 -21.48655 -19.22789 -18.50748 -18.00051 -17.75958 -16.61975 -16.25988 -15.87500 -15.72542 -14.87209 -14.68022 -14.58921 -14.27824 -13.77508 -13.55844 -13.36454 -13.28490 -12.96030 -12.62773 -12.53312 -12.36484 -12.15202 -11.97565 -11.79947 -11.25326 -11.19744 -10.57935 -10.54596 -9.82399 -8.19691 -8.11062 -6.27904 0.18599 0.61598 1.11872 1.38641 1.40337 1.51550 2.41454 2.58663 2.77685 2.99215 3.15496 3.82905 4.04150 4.18552 4.25058 4.34281 4.44448 4.52486 4.78738 4.89995 4.96822 5.08414 5.13364 5.24678 5.38020 5.44231 5.53464 5.65917 5.79146 6.21645 6.47683 6.78709 6.85268 7.00382 7.39520 8.92287 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023220 B = 0.005500 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.570442 B = 5090.003150 C = 5732.673803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 H 0.068 0.932 4 C 0.027 3.973 5 C -0.529 4.529 6 H 0.051 0.949 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.957 3.043 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.271 1.271 13 O -0.324 6.324 14 C 0.074 3.926 15 C -0.160 4.160 16 C -0.141 4.141 17 C 0.187 3.813 18 N -0.864 5.864 19 C -0.085 4.085 20 Cl -0.063 7.063 21 C -0.122 4.122 22 H 0.053 0.947 23 H 0.081 0.919 24 H 0.073 0.927 25 H -0.003 1.003 26 H 0.026 0.974 27 H 0.264 0.736 28 H 0.144 0.856 29 H 0.164 0.836 30 H 0.402 0.598 31 H 0.412 0.588 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 9.749 -17.550 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.040 3.960 3 H 0.086 0.914 4 C -0.010 4.010 5 C -0.567 4.567 6 H 0.069 0.931 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.782 3.218 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.196 1.196 13 O -0.238 6.238 14 C 0.027 3.973 15 C -0.179 4.179 16 C -0.163 4.163 17 C 0.081 3.919 18 N -0.408 5.408 19 C -0.117 4.117 20 Cl -0.035 7.035 21 C -0.142 4.142 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.015 0.985 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.162 0.838 29 H 0.181 0.819 30 H 0.232 0.768 31 H 0.243 0.757 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.268 9.372 -17.450 20.262 hybrid contribution 1.001 -0.238 0.153 1.041 sum -3.266 9.134 -17.297 19.832 Atomic orbital electron populations 1.22318 0.94180 1.02724 1.03243 1.22550 0.93900 0.96113 0.83457 0.91431 1.19127 0.95434 0.95118 0.91303 1.21468 0.93367 1.34322 1.07541 0.93089 1.25834 1.03301 0.94894 0.95355 1.70063 1.37465 1.36995 1.12642 0.85558 0.79938 0.77997 0.78270 1.19326 1.20631 1.19619 1.86184 1.81789 1.38898 1.16952 1.18970 0.99261 0.91837 0.87250 1.21419 1.03070 0.93095 1.00306 1.20631 1.03884 1.01419 0.90377 1.17412 0.96199 0.89022 0.89236 1.42384 1.71633 1.16228 1.10534 1.19967 1.08956 0.93567 0.89226 1.98314 1.83099 1.84110 1.37949 1.20053 1.02832 1.00985 0.90361 0.92760 0.90050 0.90782 0.98484 0.95616 0.92736 0.83804 0.81865 0.76766 0.75691 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.47 9.17 71.98 0.66 -4.81 16 2 C 0.10 3.96 2.17 30.59 0.07 4.03 16 3 H 0.07 2.66 6.31 -2.38 -0.02 2.65 16 4 C 0.03 1.43 4.68 29.84 0.14 1.57 16 5 C -0.53 -30.65 8.88 25.60 0.23 -30.43 16 6 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 7 C 0.00 0.23 5.46 84.65 0.46 0.69 16 8 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 9 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 O -0.32 -14.13 9.55 -93.48 -0.89 -15.03 16 14 C 0.07 2.68 6.60 22.49 0.15 2.83 16 15 C -0.16 -4.66 8.24 22.36 0.18 -4.48 16 16 C -0.14 -3.23 9.89 22.39 0.22 -3.01 16 17 C 0.19 4.39 6.76 38.14 0.26 4.64 16 18 N -0.86 -13.66 9.06 -51.19 -0.46 -14.12 16 19 C -0.09 -2.39 6.33 22.43 0.14 -2.25 16 20 Cl -0.06 -1.51 27.59 -2.72 -0.08 -1.59 16 21 C -0.12 -4.13 9.76 22.37 0.22 -3.91 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 24 H 0.07 2.03 6.91 -2.39 -0.02 2.02 16 25 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 26 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.14 3.88 5.41 -2.91 -0.02 3.87 16 29 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 30 H 0.40 5.90 7.50 -92.71 -0.70 5.20 16 31 H 0.41 4.19 8.84 -92.71 -0.82 3.37 16 32 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -67.20 288.00 3.25 -63.95 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -0.36 Total: 10.95 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 2.73 Total: -35.13 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -0.18 Total: -70.62 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.89 Total: -15.03 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -67.20 3.25 -63.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695908458.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.226 kcal (2) G-P(sol) polarization free energy of solvation -67.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds