Wall clock time and date at job start Mon Mar 30 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46755 * 2 1 4 4 C 1.53004 * 109.46994 * 119.99496 * 2 1 3 5 5 C 1.50701 * 109.46640 * 185.00276 * 4 2 1 6 6 H 1.07995 * 120.00402 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99400 * 179.72433 * 5 4 2 8 8 N 1.31506 * 120.00010 * 0.28027 * 7 5 4 9 9 Si 1.86798 * 119.99668 * 180.27291 * 7 5 4 10 10 H 1.48506 * 109.47143 * 60.00237 * 9 7 5 11 11 H 1.48502 * 109.47092 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47301 * 300.00181 * 9 7 5 13 13 O 1.42891 * 109.46941 * 239.99923 * 2 1 3 14 14 C 1.36025 * 117.00572 * 84.93168 * 13 2 1 15 15 C 1.38682 * 119.98037 * 354.51500 * 14 13 2 16 16 C 1.38116 * 120.02786 * 180.02562 * 15 14 13 17 17 C 1.38876 * 120.00486 * 0.02562 * 16 15 14 18 18 N 1.39934 * 120.01357 * 180.02562 * 17 16 15 19 19 C 1.38839 * 119.96950 * 0.02562 * 17 16 15 20 20 C 1.38220 * 119.96652 * 359.71947 * 19 17 16 21 21 Cl 1.73603 * 120.00172 * 180.29853 * 20 19 17 22 22 H 1.09002 * 109.47351 * 300.00050 * 1 2 3 23 23 H 1.09003 * 109.47187 * 60.00394 * 1 2 3 24 24 H 1.08996 * 109.47027 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46666 * 65.00349 * 4 2 1 26 26 H 1.08996 * 109.46844 * 305.00297 * 4 2 1 27 27 H 0.97000 * 119.99958 * 180.02562 * 8 7 5 28 28 H 1.08000 * 119.98262 * 0.02578 * 15 14 13 29 29 H 1.08006 * 119.99475 * 180.02562 * 16 15 14 30 30 H 0.96996 * 120.00137 * 0.02562 * 18 17 16 31 31 H 0.96997 * 119.99779 * 180.02562 * 18 17 16 32 32 H 1.07997 * 120.01595 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5420 -0.6147 1.3128 6 1 4.0790 -0.0860 0.5392 7 6 4.2299 -1.1879 2.3612 8 7 3.5760 -1.8322 3.3028 9 14 6.0909 -1.0495 2.4439 10 1 6.4787 0.3829 2.5008 11 1 6.5856 -1.7453 3.6590 12 1 6.6881 -1.6764 1.2374 13 8 2.0063 -0.6736 -1.1667 14 6 2.1113 0.0628 -2.3055 15 6 1.6566 1.3728 -2.3281 16 6 1.7621 2.1212 -3.4840 17 6 2.3233 1.5620 -4.6247 18 7 2.4308 2.3203 -5.7958 19 6 2.7776 0.2502 -4.6025 20 6 2.6761 -0.4960 -3.4434 21 17 3.2509 -2.1338 -3.4124 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.7517 -1.7714 1.2057 26 1 1.6054 -0.2616 2.1369 27 1 4.0599 -2.2352 4.0406 28 1 1.2197 1.8078 -1.4413 29 1 1.4082 3.1415 -3.5009 30 1 2.1138 3.2369 -5.8109 31 1 2.8225 1.9294 -6.5924 32 1 3.2145 -0.1853 -5.4889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695910529.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:22 Heat of formation + Delta-G solvation = -30.004630 kcal Electronic energy + Delta-G solvation = -16542.508525 eV Core-core repulsion = 13721.772863 eV Total energy + Delta-G solvation = -2820.735662 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.82993 -37.69324 -36.07754 -33.97908 -33.00767 -31.49769 -30.47414 -27.63779 -27.31206 -23.42439 -22.96653 -21.79502 -19.95051 -17.86943 -16.91826 -16.66667 -16.28918 -14.96866 -14.62711 -14.49355 -14.32546 -13.75024 -13.45383 -13.09917 -12.57762 -12.20525 -11.87451 -11.75996 -11.67436 -11.36995 -11.25695 -10.85071 -10.68385 -10.49697 -10.42638 -10.03033 -9.56744 -9.26942 -8.99596 -8.60806 -8.32802 -6.97423 -5.96132 -3.96710 1.35844 1.81081 2.57209 3.38630 3.42157 3.46677 3.82459 3.93797 4.05954 4.51427 4.99905 5.13506 5.39733 5.41641 5.62517 5.70017 5.80325 5.87528 5.97583 6.07814 6.23654 6.31356 6.48751 6.63454 6.72591 6.83292 7.43950 7.54854 7.65091 7.75134 8.00661 8.19371 8.42671 9.06515 9.66228 11.15390 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021729 B = 0.006365 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.295780 B = 4398.082058 C = 4754.485915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.061 0.939 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 O -0.281 6.281 14 C 0.109 3.891 15 C -0.158 4.158 16 C -0.152 4.152 17 C 0.173 3.827 18 N -0.884 5.884 19 C -0.153 4.153 20 C -0.031 4.031 21 Cl -0.059 7.059 22 H 0.066 0.934 23 H 0.047 0.953 24 H 0.062 0.938 25 H 0.029 0.971 26 H 0.037 0.963 27 H 0.261 0.739 28 H 0.139 0.861 29 H 0.122 0.878 30 H 0.395 0.605 31 H 0.395 0.605 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.576 7.377 -15.764 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.079 0.921 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.201 1.201 13 O -0.193 6.193 14 C 0.060 3.940 15 C -0.177 4.177 16 C -0.174 4.174 17 C 0.071 3.929 18 N -0.426 5.426 19 C -0.177 4.177 20 C -0.059 4.059 21 Cl -0.030 7.030 22 H 0.085 0.915 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.156 0.844 29 H 0.140 0.860 30 H 0.223 0.777 31 H 0.222 0.778 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.464 6.872 -15.467 17.503 hybrid contribution 1.057 0.331 -0.147 1.117 sum -3.407 7.203 -15.614 17.530 Atomic orbital electron populations 1.22420 0.97135 1.02647 1.01294 1.22860 0.91716 0.97044 0.85318 0.92114 1.19247 0.96549 0.96531 0.88672 1.21076 0.91695 1.34507 1.07610 0.92650 1.24952 0.98305 0.95289 0.95707 1.69936 1.35592 1.36179 1.12026 0.86676 0.85933 0.78177 0.77383 1.20316 1.21326 1.20124 1.86374 1.80246 1.37100 1.15620 1.18682 0.96826 0.90731 0.87752 1.21112 1.04007 0.93366 0.99247 1.20421 1.04865 1.00161 0.91992 1.17384 0.97402 0.90602 0.87538 1.42265 1.73067 1.15826 1.11433 1.20139 1.07072 0.93109 0.97363 1.19875 1.04503 0.87933 0.93607 1.98359 1.87344 1.18576 1.98692 0.91482 0.93357 0.91883 0.95261 0.94473 0.92967 0.84372 0.85957 0.77678 0.77766 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 9.17 37.16 0.34 -2.67 16 2 C 0.09 1.80 2.17 -26.73 -0.06 1.74 16 3 H 0.06 1.22 6.31 -51.93 -0.33 0.89 16 4 C 0.03 0.69 4.68 -27.88 -0.13 0.56 16 5 C -0.51 -14.61 8.88 -34.44 -0.31 -14.92 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 O -0.28 -6.09 9.01 -19.82 -0.18 -6.27 16 14 C 0.11 2.03 6.59 -39.21 -0.26 1.77 16 15 C -0.16 -2.48 8.24 -39.46 -0.33 -2.81 16 16 C -0.15 -1.99 9.89 -39.39 -0.39 -2.38 16 17 C 0.17 2.17 6.76 -83.70 -0.57 1.61 16 18 N -0.88 -7.63 9.10 32.44 0.30 -7.33 16 19 C -0.15 -2.16 9.67 -39.37 -0.38 -2.54 16 20 C -0.03 -0.54 6.33 -39.39 -0.25 -0.79 16 21 Cl -0.06 -1.04 28.50 -51.86 -1.48 -2.52 16 22 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.05 0.72 6.91 -51.93 -0.36 0.36 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 28 H 0.14 2.05 5.41 -52.49 -0.28 1.76 16 29 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.40 2.63 8.84 -40.82 -0.36 2.27 16 31 H 0.39 2.71 8.84 -40.82 -0.36 2.35 16 32 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 289.64 15.07 4.36 4.36 Total: -1.00 -31.62 289.64 -7.47 -39.09 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -3.77 Total: 0.58 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -2.42 Total: -18.84 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 1.03 Total: -33.67 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.18 Total: -6.27 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.48 Total: -2.52 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.62 -7.47 -39.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695910529.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.086 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds