Wall clock time and date at job start Mon Mar 30 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46755 * 2 1 4 4 C 1.53004 * 109.46994 * 119.99496 * 2 1 3 5 5 C 1.50701 * 109.46640 * 185.00276 * 4 2 1 6 6 H 1.07995 * 120.00402 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99400 * 179.72433 * 5 4 2 8 8 N 1.31506 * 120.00010 * 0.28027 * 7 5 4 9 9 Si 1.86798 * 119.99668 * 180.27291 * 7 5 4 10 10 H 1.48506 * 109.47143 * 60.00237 * 9 7 5 11 11 H 1.48502 * 109.47092 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47301 * 300.00181 * 9 7 5 13 13 O 1.42891 * 109.46941 * 239.99923 * 2 1 3 14 14 C 1.36025 * 117.00572 * 84.93168 * 13 2 1 15 15 C 1.38682 * 119.98037 * 354.51500 * 14 13 2 16 16 C 1.38116 * 120.02786 * 180.02562 * 15 14 13 17 17 C 1.38876 * 120.00486 * 0.02562 * 16 15 14 18 18 N 1.39934 * 120.01357 * 180.02562 * 17 16 15 19 19 C 1.38839 * 119.96950 * 0.02562 * 17 16 15 20 20 C 1.38220 * 119.96652 * 359.71947 * 19 17 16 21 21 Cl 1.73603 * 120.00172 * 180.29853 * 20 19 17 22 22 H 1.09002 * 109.47351 * 300.00050 * 1 2 3 23 23 H 1.09003 * 109.47187 * 60.00394 * 1 2 3 24 24 H 1.08996 * 109.47027 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46666 * 65.00349 * 4 2 1 26 26 H 1.08996 * 109.46844 * 305.00297 * 4 2 1 27 27 H 0.97000 * 119.99958 * 180.02562 * 8 7 5 28 28 H 1.08000 * 119.98262 * 0.02578 * 15 14 13 29 29 H 1.08006 * 119.99475 * 180.02562 * 16 15 14 30 30 H 0.96996 * 120.00137 * 0.02562 * 18 17 16 31 31 H 0.96997 * 119.99779 * 180.02562 * 18 17 16 32 32 H 1.07997 * 120.01595 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5420 -0.6147 1.3128 6 1 4.0790 -0.0860 0.5392 7 6 4.2299 -1.1879 2.3612 8 7 3.5760 -1.8322 3.3028 9 14 6.0909 -1.0495 2.4439 10 1 6.4787 0.3829 2.5008 11 1 6.5856 -1.7453 3.6590 12 1 6.6881 -1.6764 1.2374 13 8 2.0063 -0.6736 -1.1667 14 6 2.1113 0.0628 -2.3055 15 6 1.6566 1.3728 -2.3281 16 6 1.7621 2.1212 -3.4840 17 6 2.3233 1.5620 -4.6247 18 7 2.4308 2.3203 -5.7958 19 6 2.7776 0.2502 -4.6025 20 6 2.6761 -0.4960 -3.4434 21 17 3.2509 -2.1338 -3.4124 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.7517 -1.7714 1.2057 26 1 1.6054 -0.2616 2.1369 27 1 4.0599 -2.2352 4.0406 28 1 1.2197 1.8078 -1.4413 29 1 1.4082 3.1415 -3.5009 30 1 2.1138 3.2369 -5.8109 31 1 2.8225 1.9294 -6.5924 32 1 3.2145 -0.1853 -5.4889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695910529.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:22 Heat of formation + Delta-G solvation = -50.435003 kcal Electronic energy + Delta-G solvation = -16543.394453 eV Core-core repulsion = 13721.772863 eV Total energy + Delta-G solvation = -2821.621589 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.10422 -38.98859 -37.36237 -35.58543 -34.51312 -33.18893 -31.66035 -29.33552 -28.63213 -25.25090 -24.30287 -23.03525 -21.48863 -19.19563 -18.49332 -17.89116 -17.79943 -16.59749 -16.16228 -15.83185 -15.60533 -15.00196 -14.81403 -14.48579 -14.10571 -13.72043 -13.41339 -13.33343 -13.25488 -12.90477 -12.78333 -12.62243 -12.37823 -12.11016 -11.89258 -11.64743 -11.24715 -11.17035 -10.56240 -10.47766 -9.77333 -8.18718 -8.06442 -6.26388 0.22318 0.63829 1.31223 1.37626 1.41276 1.48671 2.41612 2.52944 2.80837 3.11489 3.16524 3.88808 4.03524 4.16094 4.26416 4.34523 4.48905 4.56975 4.80169 4.83058 5.00392 5.07354 5.21621 5.24803 5.37506 5.45417 5.52452 5.68302 5.79679 6.22535 6.59201 6.77364 6.85570 7.11305 7.40450 8.93102 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021729 B = 0.006365 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.295780 B = 4398.082058 C = 4754.485915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 H 0.067 0.933 4 C 0.030 3.970 5 C -0.526 4.526 6 H 0.050 0.950 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.954 3.046 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.276 1.276 13 O -0.314 6.314 14 C 0.065 3.935 15 C -0.159 4.159 16 C -0.149 4.149 17 C 0.189 3.811 18 N -0.864 5.864 19 C -0.158 4.158 20 C -0.047 4.047 21 Cl -0.077 7.077 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.052 0.948 25 H -0.005 1.005 26 H 0.025 0.975 27 H 0.263 0.737 28 H 0.144 0.856 29 H 0.157 0.843 30 H 0.410 0.590 31 H 0.407 0.593 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.312 9.666 -17.785 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.085 0.915 4 C -0.007 4.007 5 C -0.564 4.564 6 H 0.068 0.932 7 C -0.193 4.193 8 N -0.572 5.572 9 Si 0.779 3.221 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.202 1.202 13 O -0.228 6.228 14 C 0.017 3.983 15 C -0.178 4.178 16 C -0.171 4.171 17 C 0.084 3.916 18 N -0.407 5.407 19 C -0.182 4.182 20 C -0.075 4.075 21 Cl -0.049 7.049 22 H 0.099 0.901 23 H 0.092 0.908 24 H 0.071 0.929 25 H 0.014 0.986 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.162 0.838 29 H 0.175 0.825 30 H 0.240 0.760 31 H 0.236 0.764 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.204 9.202 -17.540 20.249 hybrid contribution 0.961 -0.290 0.320 1.053 sum -3.243 8.912 -17.221 19.660 Atomic orbital electron populations 1.22309 0.94257 1.02627 1.03177 1.22551 0.93859 0.96080 0.83653 0.91523 1.19093 0.95411 0.94995 0.91213 1.21407 0.93316 1.34300 1.07368 0.93222 1.25805 1.03150 0.94943 0.95383 1.70053 1.37449 1.37014 1.12639 0.85663 0.80156 0.78819 0.77428 1.18905 1.20430 1.20168 1.86270 1.81546 1.38372 1.16598 1.18986 0.99954 0.92180 0.87152 1.21248 1.03626 0.92371 1.00548 1.20766 1.03972 1.01366 0.91036 1.17485 0.95389 0.90143 0.88569 1.42257 1.71794 1.16180 1.10469 1.20356 1.07203 0.93662 0.96980 1.20158 1.05269 0.87522 0.94537 1.98342 1.87636 1.20131 1.98768 0.90080 0.90832 0.92884 0.98650 0.95681 0.92777 0.83816 0.82546 0.75996 0.76357 0.83173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.60 9.17 71.98 0.66 -4.94 16 2 C 0.09 4.00 2.17 30.60 0.07 4.07 16 3 H 0.07 2.69 6.31 -2.39 -0.02 2.67 16 4 C 0.03 1.60 4.68 29.85 0.14 1.74 16 5 C -0.53 -30.92 8.88 25.60 0.23 -30.70 16 6 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 7 C 0.00 0.29 5.46 84.66 0.46 0.75 16 8 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 9 Si 0.95 46.14 29.54 68.60 2.03 48.16 16 10 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 13 O -0.31 -13.98 9.01 -93.83 -0.85 -14.82 16 14 C 0.07 2.41 6.59 22.51 0.15 2.56 16 15 C -0.16 -4.71 8.24 22.35 0.18 -4.52 16 16 C -0.15 -3.38 9.89 22.39 0.22 -3.16 16 17 C 0.19 4.08 6.76 38.14 0.26 4.33 16 18 N -0.86 -10.97 9.10 -51.27 -0.47 -11.44 16 19 C -0.16 -4.11 9.67 22.41 0.22 -3.89 16 20 C -0.05 -1.61 6.33 22.40 0.14 -1.46 16 21 Cl -0.08 -2.80 28.50 -2.72 -0.08 -2.88 16 22 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.07 2.08 6.91 -2.39 -0.02 2.07 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 25 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 28 H 0.14 3.99 5.41 -2.91 -0.02 3.98 16 29 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 30 H 0.41 3.38 8.84 -92.71 -0.82 2.56 16 31 H 0.41 3.76 8.84 -92.71 -0.82 2.94 16 32 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -70.32 289.64 3.16 -67.16 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -0.48 Total: 6.25 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 2.73 Total: -35.23 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -0.18 Total: -68.65 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.85 Total: -14.82 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.08 Total: -2.88 kcal Total: -70.32 3.16 -67.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695910529.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.722 kcal (2) G-P(sol) polarization free energy of solvation -70.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds