Wall clock time and date at job start Mon Mar 30 2020 07:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47478 * 2 1 4 4 C 1.52996 * 109.47256 * 239.99563 * 2 1 3 5 5 C 1.50697 * 109.47325 * 175.00062 * 4 2 1 6 6 H 1.08002 * 119.99949 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00010 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99675 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00090 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46841 * 90.00129 * 9 7 5 11 11 H 1.48494 * 109.47138 * 210.00205 * 9 7 5 12 12 H 1.48501 * 109.47167 * 330.00254 * 9 7 5 13 13 S 1.81398 * 109.46919 * 119.99814 * 2 1 3 14 14 C 1.76196 * 103.00169 * 290.11148 * 13 2 1 15 15 C 1.38913 * 120.00325 * 173.77553 * 14 13 2 16 16 C 1.38121 * 120.03370 * 179.97438 * 15 14 13 17 17 C 1.38790 * 120.02520 * 0.02562 * 16 15 14 18 18 N 1.40178 * 119.99610 * 179.97438 * 17 16 15 19 19 C 1.39045 * 120.00091 * 0.02562 * 17 16 15 20 20 F 1.35105 * 120.01200 * 179.97438 * 19 17 16 21 21 C 1.38236 * 119.96965 * 359.97438 * 19 17 16 22 22 H 1.08998 * 109.46898 * 294.59951 * 1 2 3 23 23 H 1.08996 * 109.46825 * 54.59826 * 1 2 3 24 24 H 1.08996 * 109.46930 * 174.59847 * 1 2 3 25 25 H 1.09008 * 109.47554 * 295.00409 * 4 2 1 26 26 H 1.09005 * 109.47270 * 54.99868 * 4 2 1 27 27 H 0.97002 * 119.99788 * 180.02562 * 8 7 5 28 28 H 1.08006 * 119.98118 * 359.72738 * 15 14 13 29 29 H 1.08000 * 119.98580 * 179.97438 * 16 15 14 30 30 H 0.97000 * 119.99973 * 180.02562 * 18 17 16 31 31 H 0.97001 * 120.00288 * 0.05010 * 18 17 16 32 32 H 1.08006 * 120.01378 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2304 -1.1928 -2.3582 8 7 5.5411 -1.1005 -2.4133 9 14 3.3015 -2.1081 -3.6958 10 1 2.9398 -1.1629 -4.7826 11 1 4.1602 -3.1881 -4.2444 12 1 2.0659 -2.7006 -3.1235 13 16 2.1346 -0.8551 1.4812 14 6 1.7102 0.2558 2.7812 15 6 1.9030 -0.1181 4.1051 16 6 1.5710 0.7525 5.1247 17 6 1.0439 2.0015 4.8274 18 7 0.7067 2.8844 5.8627 19 6 0.8494 2.3767 3.5028 20 9 0.3359 3.5923 3.2131 21 6 1.1818 1.5053 2.4824 22 1 -0.3633 0.4278 0.9344 23 1 -0.3633 0.5953 -0.8376 24 1 -0.3633 -1.0231 -0.0967 25 1 1.7517 -1.7716 -1.2055 26 1 1.6054 -0.2619 -2.1370 27 1 6.0254 -1.5066 -3.1491 28 1 2.3090 -1.0916 4.3373 29 1 1.7208 0.4608 6.1538 30 1 0.3380 3.7572 5.6550 31 1 0.8424 2.6226 6.7869 32 1 1.0314 1.7962 1.4531 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709965495.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:44 Heat of formation + Delta-G solvation = -32.215820 kcal Electronic energy + Delta-G solvation = -16139.749231 eV Core-core repulsion = 13333.334181 eV Total energy + Delta-G solvation = -2806.415051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.079 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -48.72383 -38.90013 -34.97927 -34.42281 -32.16954 -30.45673 -28.75069 -27.89372 -23.22331 -22.94617 -22.34660 -20.42637 -17.97971 -17.16611 -16.94274 -16.72198 -15.59399 -15.50386 -15.08124 -15.02521 -14.39408 -13.85272 -13.23804 -13.06674 -12.73587 -12.57255 -12.40187 -12.19857 -11.86844 -11.45453 -11.26355 -10.91628 -10.88319 -10.36431 -9.99443 -9.72012 -9.36547 -9.24548 -8.78332 -8.55009 -8.23249 -6.54649 -6.03741 -4.02572 1.28906 1.42914 2.16871 3.11418 3.29341 3.37632 3.39643 3.70198 3.71186 4.36430 4.43620 4.83366 5.21664 5.29252 5.36490 5.46866 5.56713 5.61128 5.83996 5.91321 6.09876 6.15220 6.21487 6.37511 6.43649 6.51524 6.76283 6.98050 7.15661 7.32678 7.59083 7.69642 8.50732 9.03134 9.56497 11.08931 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.037373 B = 0.005060 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.026501 B = 5531.926034 C = 5718.377128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.061 4.061 3 H 0.087 0.913 4 C 0.003 3.997 5 C -0.520 4.520 6 H 0.082 0.918 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.265 1.265 13 S -0.074 6.074 14 C -0.106 4.106 15 C -0.069 4.069 16 C -0.154 4.154 17 C 0.167 3.833 18 N -0.880 5.880 19 C 0.037 3.963 20 F -0.146 7.146 21 C -0.126 4.126 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.026 0.974 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.399 0.601 31 H 0.399 0.601 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.102 4.734 14.300 18.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.190 4.190 3 H 0.105 0.895 4 C -0.035 4.035 5 C -0.558 4.558 6 H 0.100 0.900 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.700 3.300 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.190 1.190 13 S 0.173 5.827 14 C -0.221 4.221 15 C -0.094 4.094 16 C -0.179 4.179 17 C 0.061 3.939 18 N -0.421 5.421 19 C 0.011 3.989 20 F -0.125 7.125 21 C -0.152 4.152 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.227 0.773 31 H 0.227 0.773 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.366 3.550 14.051 17.818 hybrid contribution -1.093 1.296 -0.641 1.813 sum -11.459 4.846 13.409 18.292 Atomic orbital electron populations 1.22222 0.94686 1.02722 1.01473 1.23472 0.96544 1.02509 0.96428 0.89515 1.19496 0.98099 0.95606 0.90333 1.21127 0.89123 1.35632 1.09932 0.90028 1.24969 0.94694 0.95728 0.97691 1.69905 1.06492 1.45151 1.32126 0.86882 0.80374 0.80138 0.82558 1.20291 1.21260 1.18994 1.85873 1.74018 1.26471 0.96383 1.21796 1.04056 0.97787 0.98479 1.20591 0.99077 0.99576 0.90109 1.20370 1.05427 0.92510 0.99546 1.17680 0.97834 0.91559 0.86830 1.42310 1.74747 1.18819 1.06251 1.16994 1.07239 0.82788 0.91835 1.91418 1.85336 1.41634 1.94131 1.21094 1.01661 0.93232 0.99182 0.92856 0.91996 0.91756 0.95570 0.95199 0.92707 0.84976 0.85203 0.77323 0.77256 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.71 37.16 0.32 -2.09 16 2 C -0.06 -1.18 1.98 -26.73 -0.05 -1.23 16 3 H 0.09 1.71 6.83 -51.93 -0.35 1.36 16 4 C 0.00 0.07 3.51 -27.89 -0.10 -0.02 16 5 C -0.52 -14.44 9.09 -34.44 -0.31 -14.75 16 6 H 0.08 2.47 7.84 -52.49 -0.41 2.05 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.87 21.32 27.47 -169.99 -4.67 16.65 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 13 S -0.07 -1.42 20.61 -107.50 -2.22 -3.64 16 14 C -0.11 -1.74 5.97 -39.08 -0.23 -1.97 16 15 C -0.07 -0.96 9.78 -39.37 -0.39 -1.34 16 16 C -0.15 -1.84 9.89 -39.42 -0.39 -2.23 16 17 C 0.17 2.10 6.77 -83.54 -0.57 1.53 16 18 N -0.88 -8.00 9.11 32.51 0.30 -7.71 16 19 C 0.04 0.54 7.31 -39.28 -0.29 0.25 16 20 F -0.15 -2.13 16.64 2.25 0.04 -2.09 16 21 C -0.13 -2.01 8.00 -39.33 -0.31 -2.32 16 22 H 0.05 0.78 6.11 -51.93 -0.32 0.47 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.03 0.61 7.20 -51.92 -0.37 0.24 16 26 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 29 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.40 3.33 8.32 -40.82 -0.34 3.00 16 31 H 0.40 2.58 8.85 -40.82 -0.36 2.22 16 32 H 0.14 2.23 4.98 -52.48 -0.26 1.97 16 LS Contribution 283.43 15.07 4.27 4.27 Total: -1.00 -30.74 283.43 -7.59 -38.33 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -3.67 Total: 3.13 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -2.41 Total: -22.24 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 1.07 Total: -34.41 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.22 Total: -3.64 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.74 -7.59 -38.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709965495.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.118 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds