Wall clock time and date at job start Mon Mar 30 2020 07:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47478 * 2 1 4 4 C 1.52996 * 109.47256 * 239.99563 * 2 1 3 5 5 C 1.50697 * 109.47325 * 175.00062 * 4 2 1 6 6 H 1.08002 * 119.99949 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00010 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99675 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00090 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46841 * 90.00129 * 9 7 5 11 11 H 1.48494 * 109.47138 * 210.00205 * 9 7 5 12 12 H 1.48501 * 109.47167 * 330.00254 * 9 7 5 13 13 S 1.81398 * 109.46919 * 119.99814 * 2 1 3 14 14 C 1.76196 * 103.00169 * 290.11148 * 13 2 1 15 15 C 1.38913 * 120.00325 * 173.77553 * 14 13 2 16 16 C 1.38121 * 120.03370 * 179.97438 * 15 14 13 17 17 C 1.38790 * 120.02520 * 0.02562 * 16 15 14 18 18 N 1.40178 * 119.99610 * 179.97438 * 17 16 15 19 19 C 1.39045 * 120.00091 * 0.02562 * 17 16 15 20 20 F 1.35105 * 120.01200 * 179.97438 * 19 17 16 21 21 C 1.38236 * 119.96965 * 359.97438 * 19 17 16 22 22 H 1.08998 * 109.46898 * 294.59951 * 1 2 3 23 23 H 1.08996 * 109.46825 * 54.59826 * 1 2 3 24 24 H 1.08996 * 109.46930 * 174.59847 * 1 2 3 25 25 H 1.09008 * 109.47554 * 295.00409 * 4 2 1 26 26 H 1.09005 * 109.47270 * 54.99868 * 4 2 1 27 27 H 0.97002 * 119.99788 * 180.02562 * 8 7 5 28 28 H 1.08006 * 119.98118 * 359.72738 * 15 14 13 29 29 H 1.08000 * 119.98580 * 179.97438 * 16 15 14 30 30 H 0.97000 * 119.99973 * 180.02562 * 18 17 16 31 31 H 0.97001 * 120.00288 * 0.05010 * 18 17 16 32 32 H 1.08006 * 120.01378 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2304 -1.1928 -2.3582 8 7 5.5411 -1.1005 -2.4133 9 14 3.3015 -2.1081 -3.6958 10 1 2.9398 -1.1629 -4.7826 11 1 4.1602 -3.1881 -4.2444 12 1 2.0659 -2.7006 -3.1235 13 16 2.1346 -0.8551 1.4812 14 6 1.7102 0.2558 2.7812 15 6 1.9030 -0.1181 4.1051 16 6 1.5710 0.7525 5.1247 17 6 1.0439 2.0015 4.8274 18 7 0.7067 2.8844 5.8627 19 6 0.8494 2.3767 3.5028 20 9 0.3359 3.5923 3.2131 21 6 1.1818 1.5053 2.4824 22 1 -0.3633 0.4278 0.9344 23 1 -0.3633 0.5953 -0.8376 24 1 -0.3633 -1.0231 -0.0967 25 1 1.7517 -1.7716 -1.2055 26 1 1.6054 -0.2619 -2.1370 27 1 6.0254 -1.5066 -3.1491 28 1 2.3090 -1.0916 4.3373 29 1 1.7208 0.4608 6.1538 30 1 0.3380 3.7572 5.6550 31 1 0.8424 2.6226 6.7869 32 1 1.0314 1.7962 1.4531 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709965495.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:42 Heat of formation + Delta-G solvation = -51.384115 kcal Electronic energy + Delta-G solvation = -16140.580431 eV Core-core repulsion = 13333.334181 eV Total energy + Delta-G solvation = -2807.246250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.079 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.84157 -39.96961 -36.59502 -35.51044 -34.17367 -31.60293 -30.08980 -29.37074 -24.96892 -24.11240 -23.49036 -22.04655 -19.12133 -18.88951 -18.17758 -17.98003 -16.95204 -16.64137 -16.49257 -16.22833 -15.98930 -15.11742 -14.76439 -14.43048 -14.17073 -13.93352 -13.78150 -13.62472 -13.45934 -12.81615 -12.66937 -12.48209 -12.08234 -11.89257 -11.75507 -11.56763 -11.39069 -10.85366 -10.68923 -9.87010 -9.36804 -8.24562 -7.83088 -6.27327 0.18998 0.31796 0.78380 1.37160 1.39795 1.50289 1.71169 2.38401 2.61276 2.85723 3.11271 3.29963 3.75162 3.96505 4.12480 4.17112 4.27128 4.46798 4.58782 4.81638 4.85528 4.90651 5.04908 5.06083 5.11727 5.19461 5.34585 5.35868 5.62523 5.71935 6.31045 6.42547 6.79455 6.91870 7.34991 8.92550 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.037373 B = 0.005060 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.026501 B = 5531.926034 C = 5718.377128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 H 0.073 0.927 4 C 0.006 3.994 5 C -0.521 4.521 6 H 0.039 0.961 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.944 3.056 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.246 1.246 13 S -0.130 6.130 14 C -0.123 4.123 15 C -0.067 4.067 16 C -0.146 4.146 17 C 0.181 3.819 18 N -0.862 5.862 19 C 0.016 3.984 20 F -0.148 7.148 21 C -0.135 4.135 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.027 0.973 26 H 0.042 0.958 27 H 0.265 0.735 28 H 0.144 0.856 29 H 0.170 0.830 30 H 0.405 0.595 31 H 0.416 0.584 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 4.819 15.741 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 H 0.092 0.908 4 C -0.033 4.033 5 C -0.559 4.559 6 H 0.058 0.942 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.767 3.233 10 H -0.190 1.190 11 H -0.213 1.213 12 H -0.169 1.169 13 S 0.115 5.885 14 C -0.237 4.237 15 C -0.091 4.091 16 C -0.170 4.170 17 C 0.073 3.927 18 N -0.404 5.404 19 C -0.010 4.010 20 F -0.128 7.128 21 C -0.160 4.160 22 H 0.082 0.918 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.162 0.838 29 H 0.187 0.813 30 H 0.234 0.766 31 H 0.247 0.753 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.537 3.677 15.551 20.311 hybrid contribution -0.397 1.406 -0.861 1.696 sum -12.934 5.083 14.690 20.222 Atomic orbital electron populations 1.22130 0.91591 1.03540 1.02750 1.23300 0.98925 1.00999 0.94908 0.90823 1.19414 0.94895 0.96217 0.92741 1.21370 0.91682 1.34346 1.08504 0.94226 1.25923 0.95508 0.96938 1.00576 1.70069 1.08550 1.47039 1.33439 0.85758 0.79452 0.78793 0.79287 1.19026 1.21265 1.16923 1.85822 1.75959 1.28412 0.98303 1.21589 1.06586 0.97490 0.98083 1.20855 0.98288 1.00533 0.89473 1.20721 1.03919 0.91520 1.00824 1.17820 0.96128 0.92067 0.86705 1.42335 1.73243 1.18440 1.06428 1.17083 1.08508 0.82783 0.92595 1.91407 1.85449 1.41630 1.94266 1.21048 1.02157 0.93537 0.99275 0.91801 0.90392 0.91153 0.95480 0.94018 0.92649 0.83787 0.81282 0.76612 0.75301 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 8.71 71.98 0.63 -3.68 16 2 C -0.05 -2.07 1.98 30.59 0.06 -2.01 16 3 H 0.07 3.02 6.83 -2.39 -0.02 3.01 16 4 C 0.01 0.26 3.51 29.85 0.10 0.37 16 5 C -0.52 -29.84 9.09 25.60 0.23 -29.61 16 6 H 0.04 2.54 7.84 -2.91 -0.02 2.51 16 7 C 0.01 0.42 5.47 84.66 0.46 0.89 16 8 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 9 Si 0.94 44.02 27.47 68.60 1.88 45.90 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 13 S -0.13 -5.10 20.61 -56.49 -1.16 -6.27 16 14 C -0.12 -4.00 5.97 22.59 0.13 -3.86 16 15 C -0.07 -1.76 9.78 22.40 0.22 -1.54 16 16 C -0.15 -2.98 9.89 22.37 0.22 -2.76 16 17 C 0.18 4.01 6.77 38.13 0.26 4.27 16 18 N -0.86 -12.51 9.11 -51.04 -0.47 -12.98 16 19 C 0.02 0.44 7.31 22.46 0.16 0.61 16 20 F -0.15 -4.15 16.64 44.97 0.75 -3.40 16 21 C -0.13 -4.27 8.00 22.43 0.18 -4.09 16 22 H 0.06 1.81 6.11 -2.39 -0.01 1.80 16 23 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.03 1.25 7.20 -2.38 -0.02 1.23 16 26 H 0.04 1.83 7.57 -2.38 -0.02 1.81 16 27 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 29 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 30 H 0.40 5.44 8.32 -92.71 -0.77 4.67 16 31 H 0.42 3.54 8.85 -92.71 -0.82 2.72 16 32 H 0.13 4.23 4.98 -2.91 -0.01 4.21 16 Total: -1.00 -68.67 283.43 3.48 -65.19 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -0.49 Total: 12.79 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 2.67 Total: -41.41 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -0.17 Total: -72.80 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.75 Total: -3.40 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Atomic # 16 Polarization: -5.10 SS G_CDS: -1.16 Total: -6.27 kcal Total: -68.67 3.48 -65.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709965495.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.809 kcal (2) G-P(sol) polarization free energy of solvation -68.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds