Wall clock time and date at job start Mon Mar 30 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46842 * 2 1 4 4 C 1.53002 * 109.47331 * 240.00378 * 2 1 3 5 5 C 1.50698 * 109.47058 * 174.99749 * 4 2 1 6 6 H 1.08000 * 120.00424 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99430 * 179.72617 * 5 4 2 8 8 N 1.31524 * 119.99641 * 180.27490 * 7 5 4 9 9 Si 1.86797 * 120.00489 * 0.27013 * 7 5 4 10 10 H 1.48499 * 109.46933 * 90.00350 * 9 7 5 11 11 H 1.48496 * 109.47341 * 210.00286 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00722 * 9 7 5 13 13 O 1.42898 * 109.47655 * 120.00010 * 2 1 3 14 14 C 1.36013 * 116.99979 * 275.20030 * 13 2 1 15 15 C 1.38505 * 120.07535 * 5.40302 * 14 13 2 16 16 C 1.38375 * 120.00790 * 180.02562 * 15 14 13 17 17 Cl 1.73602 * 119.92120 * 180.02562 * 16 15 14 18 18 C 1.38354 * 120.15545 * 0.02562 * 16 15 14 19 19 C 1.38226 * 120.14553 * 359.95628 * 18 16 15 20 20 C 1.38720 * 119.99240 * 359.76387 * 19 18 16 21 21 N 1.40030 * 120.07768 * 180.27828 * 20 19 18 22 22 H 1.08993 * 109.47342 * 59.99680 * 1 2 3 23 23 H 1.08999 * 109.46760 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46908 * 299.99819 * 1 2 3 25 25 H 1.09003 * 109.47062 * 54.99584 * 4 2 1 26 26 H 1.08996 * 109.46632 * 295.00109 * 4 2 1 27 27 H 0.97000 * 119.99839 * 179.97438 * 8 7 5 28 28 H 1.08001 * 119.99641 * 359.97438 * 15 14 13 29 29 H 1.08002 * 119.92899 * 179.97438 * 18 16 15 30 30 H 1.07999 * 120.00352 * 180.02562 * 19 18 16 31 31 H 0.96998 * 119.99890 * 180.26030 * 21 20 19 32 32 H 0.97005 * 120.00092 * 0.25374 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6147 -1.3127 6 1 4.0790 -0.0853 -0.5396 7 6 4.2308 -1.1977 -2.3551 8 7 5.5421 -1.1094 -2.4077 9 14 3.3020 -2.1129 -3.6927 10 1 2.9466 -1.1692 -4.7828 11 1 4.1582 -3.1975 -4.2365 12 1 2.0628 -2.6994 -3.1221 13 8 2.0065 -0.6736 1.1667 14 6 2.1088 0.0622 2.3060 15 6 1.6543 1.3703 2.3307 16 6 1.7595 2.1178 3.4904 17 17 1.1885 3.7570 3.5189 18 6 2.3188 1.5619 4.6272 19 6 2.7741 0.2569 4.6099 20 6 2.6663 -0.4998 3.4523 21 7 3.1217 -1.8239 3.4344 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6054 -0.2616 -2.1370 26 1 1.7517 -1.7714 -1.2056 27 1 6.0268 -1.5199 -3.1408 28 1 1.2184 1.8072 1.4444 29 1 2.3996 2.1488 5.5302 30 1 3.2099 -0.1748 5.4987 31 1 3.0492 -2.3508 2.6233 32 1 3.5098 -2.2141 4.2333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710016306.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:35 Heat of formation + Delta-G solvation = -50.077894 kcal Electronic energy + Delta-G solvation = -16635.676110 eV Core-core repulsion = 13814.070006 eV Total energy + Delta-G solvation = -2821.606104 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23880 -38.80878 -37.38725 -35.38048 -35.06706 -33.50530 -31.07153 -29.81872 -29.03051 -25.13622 -24.12871 -22.92085 -21.52405 -19.30157 -18.89185 -17.98007 -17.64460 -16.48356 -16.41532 -15.98341 -15.57139 -15.17645 -14.79733 -14.47792 -14.29888 -13.85298 -13.61318 -13.48987 -13.19579 -12.92748 -12.78511 -12.49697 -12.18933 -12.00619 -11.80836 -11.65481 -11.35566 -11.23056 -11.04120 -10.76655 -9.49258 -8.27284 -8.14636 -6.31242 0.36266 0.49190 1.29953 1.36743 1.38985 1.50448 2.36790 2.39546 2.78798 3.06195 3.09159 3.85692 3.98807 4.16255 4.20122 4.30988 4.41238 4.57105 4.73376 4.83194 4.93126 5.03114 5.14064 5.16502 5.23260 5.35274 5.38883 5.62285 5.73682 6.25580 6.37790 6.71678 6.78381 7.04077 7.31329 8.89864 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.005879 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.438102 B = 4761.659288 C = 5164.342811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 H 0.054 0.946 4 C -0.009 4.009 5 C -0.519 4.519 6 H 0.024 0.976 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.951 3.049 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.244 1.244 13 O -0.314 6.314 14 C 0.052 3.948 15 C -0.171 4.171 16 C -0.067 4.067 17 Cl -0.078 7.078 18 C -0.098 4.098 19 C -0.157 4.157 20 C 0.183 3.817 21 N -0.864 5.864 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.265 0.735 28 H 0.134 0.866 29 H 0.157 0.843 30 H 0.166 0.834 31 H 0.402 0.598 32 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.453 2.547 13.215 17.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.043 3.957 3 H 0.072 0.928 4 C -0.046 4.046 5 C -0.557 4.557 6 H 0.042 0.958 7 C -0.193 4.193 8 N -0.594 5.594 9 Si 0.774 3.226 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.167 1.167 13 O -0.228 6.228 14 C 0.003 3.997 15 C -0.191 4.191 16 C -0.096 4.096 17 Cl -0.049 7.049 18 C -0.118 4.118 19 C -0.180 4.180 20 C 0.077 3.923 21 N -0.405 5.405 22 H 0.104 0.896 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.152 0.848 29 H 0.174 0.826 30 H 0.183 0.817 31 H 0.230 0.770 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.335 2.463 13.076 16.848 hybrid contribution 0.341 -0.287 -0.958 1.056 sum -9.994 2.176 12.118 15.858 Atomic orbital electron populations 1.22338 0.93605 1.03340 1.03324 1.22385 0.94041 0.95758 0.83512 0.92782 1.19683 0.94661 0.97096 0.93191 1.21250 0.92037 1.34154 1.08287 0.95784 1.26014 0.95594 0.96947 1.00766 1.70089 1.08633 1.46958 1.33681 0.85647 0.79361 0.78648 0.78910 1.18874 1.21252 1.16718 1.86073 1.82023 1.38234 1.16494 1.18736 1.01951 0.91524 0.87484 1.20987 1.05554 0.93468 0.99080 1.20432 1.06685 0.86643 0.95835 1.98322 1.88087 1.19744 1.98792 1.20926 0.98252 0.95137 0.97441 1.20661 1.06399 0.94026 0.96961 1.17585 0.95404 0.87313 0.92003 1.42344 1.70176 1.10373 1.17572 0.89562 0.91510 0.91656 0.93370 0.95264 0.92613 0.84801 0.82561 0.81702 0.76994 0.75925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.07 9.17 71.98 0.66 -4.41 16 2 C 0.10 3.91 2.17 30.60 0.07 3.97 16 3 H 0.05 2.23 6.32 -2.38 -0.02 2.21 16 4 C -0.01 -0.42 3.75 29.85 0.11 -0.31 16 5 C -0.52 -30.07 9.43 25.60 0.24 -29.83 16 6 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 7 C 0.00 0.18 5.47 84.65 0.46 0.64 16 8 N -0.95 -60.26 13.96 21.45 0.30 -59.97 16 9 Si 0.95 43.65 27.47 68.60 1.88 45.54 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 13 O -0.31 -12.84 8.80 -93.69 -0.82 -13.67 16 14 C 0.05 1.89 6.62 22.59 0.15 2.04 16 15 C -0.17 -5.66 8.02 22.37 0.18 -5.48 16 16 C -0.07 -1.93 6.32 22.33 0.14 -1.79 16 17 Cl -0.08 -2.01 28.95 -2.72 -0.08 -2.09 16 18 C -0.10 -2.39 9.82 22.29 0.22 -2.17 16 19 C -0.16 -3.80 9.89 22.38 0.22 -3.58 16 20 C 0.18 5.60 6.77 38.20 0.26 5.86 16 21 N -0.86 -23.24 9.09 -51.02 -0.46 -23.71 16 22 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.06 1.80 6.90 -2.39 -0.02 1.78 16 25 H 0.05 2.06 7.58 -2.39 -0.02 2.05 16 26 H 0.03 1.33 7.19 -2.39 -0.02 1.32 16 27 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 28 H 0.13 4.41 5.42 -2.91 -0.02 4.39 16 29 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.40 12.17 8.19 -92.71 -0.76 11.41 16 32 H 0.41 7.96 8.85 -92.70 -0.82 7.14 16 Total: -1.00 -68.31 285.60 3.05 -65.26 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -0.48 Total: 23.67 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 2.71 Total: -35.05 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -0.16 Total: -83.67 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.82 Total: -13.67 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.54 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.08 Total: -2.09 kcal Total: -68.31 3.05 -65.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710016306.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.181 kcal (2) G-P(sol) polarization free energy of solvation -68.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds