Wall clock time and date at job start Mon Mar 30 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40224 * 120.36612 * 2 1 4 4 C 1.35319 * 119.96132 * 179.97438 * 3 2 1 5 5 C 1.50690 * 119.63932 * 180.02562 * 4 3 2 6 6 N 1.35812 * 120.71897 * 359.97438 * 4 3 2 7 7 C 1.46508 * 119.62026 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.46871 * 90.00182 * 7 6 4 9 9 C 1.50697 * 109.46772 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00440 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00051 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99512 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00246 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46868 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47122 * 119.99883 * 13 11 9 16 16 H 1.48495 * 109.47235 * 240.00257 * 13 11 9 17 17 C 1.34660 * 120.75585 * 0.04214 * 6 4 3 18 18 O 1.22062 * 119.99189 * 179.97438 * 17 6 4 19 19 C 1.36444 * 120.36865 * 179.72511 * 2 1 3 20 20 Cl 1.73603 * 120.35674 * 359.97356 * 19 2 1 21 21 H 1.09002 * 109.47152 * 89.99851 * 1 2 3 22 22 H 1.09001 * 109.46980 * 329.99951 * 1 2 3 23 23 H 1.09004 * 109.47113 * 209.99932 * 1 2 3 24 24 H 1.07994 * 120.01865 * 359.97438 * 3 2 1 25 25 H 1.09002 * 109.47460 * 0.02562 * 5 4 3 26 26 H 1.08998 * 109.47297 * 120.00014 * 5 4 3 27 27 H 1.09003 * 109.47357 * 240.00315 * 5 4 3 28 28 H 1.08996 * 109.46712 * 210.00089 * 7 6 4 29 29 H 1.09001 * 109.47031 * 330.00415 * 7 6 4 30 30 H 1.08993 * 109.46876 * 300.00053 * 8 7 6 31 31 H 1.08996 * 109.47189 * 59.99799 * 8 7 6 32 32 H 0.96998 * 119.99446 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.2099 0.0000 4 6 3.5691 1.2003 0.0005 5 6 4.3235 2.5047 0.0011 6 7 4.2546 0.0279 0.0016 7 6 5.7195 0.0456 0.0027 8 6 6.2283 0.0524 1.4456 9 6 7.7352 0.0700 1.4467 10 1 8.2759 0.0762 0.5119 11 6 8.4236 0.0793 2.6413 12 7 7.7652 0.0722 3.7798 13 14 10.2915 0.1018 2.6428 14 1 10.7875 0.1073 1.2431 15 1 10.7712 1.3208 3.3422 16 1 10.8005 -1.1040 3.3441 17 6 3.6031 -1.1507 0.0013 18 8 4.2332 -2.1961 0.0018 19 6 2.1968 -1.1772 0.0056 20 17 1.3479 -2.6915 0.0136 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5138 24 1 1.6822 2.1487 -0.0004 25 1 3.6159 3.3338 0.0015 26 1 4.9499 2.5618 0.8913 27 1 4.9505 2.5623 -0.8887 28 1 6.0939 -0.8401 -0.5105 29 1 6.0724 0.9398 -0.5112 30 1 5.8538 0.9381 1.9587 31 1 5.8754 -0.8416 1.9595 32 1 8.2495 0.0784 4.6201 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919254813.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:27 Heat of formation + Delta-G solvation = -27.957248 kcal Electronic energy + Delta-G solvation = -16726.368170 eV Core-core repulsion = 13905.721289 eV Total energy + Delta-G solvation = -2820.646881 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15621 -36.96780 -36.64496 -35.11193 -33.22061 -31.61657 -30.44045 -28.08391 -27.01714 -24.84429 -22.45012 -21.85609 -20.48032 -17.64211 -17.21296 -16.19981 -15.51181 -15.50392 -14.51953 -14.19387 -13.73564 -13.53807 -13.43476 -13.30440 -12.87517 -12.50154 -12.43173 -12.11195 -11.79151 -11.59382 -11.42494 -11.02425 -11.00912 -10.68032 -10.61918 -10.12895 -10.00830 -9.60998 -9.25973 -9.07570 -8.47528 -7.51469 -6.11809 -4.16603 0.92677 2.05161 2.29760 3.22848 3.25826 3.34231 3.37696 3.80920 4.37350 4.52405 4.66627 5.01109 5.11546 5.24840 5.35123 5.45803 5.50734 5.53657 5.77882 5.81882 5.98966 6.08875 6.14612 6.19208 6.31429 6.51604 6.75422 7.31681 7.48041 7.63099 7.84442 8.18786 8.38605 8.88841 9.48391 10.99567 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030262 B = 0.005649 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.031436 B = 4955.241025 C = 5486.336369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.030 3.970 3 C -0.252 4.252 4 C 0.194 3.806 5 C -0.130 4.130 6 N -0.480 5.480 7 C 0.088 3.912 8 C 0.015 3.985 9 C -0.524 4.524 10 H 0.060 0.940 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.897 3.103 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.522 3.478 18 O -0.528 6.528 19 C -0.189 4.189 20 Cl -0.047 7.047 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.147 0.853 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.021 0.979 31 H 0.027 0.973 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.444 5.694 -8.270 16.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.025 3.975 3 C -0.276 4.276 4 C 0.081 3.919 5 C -0.187 4.187 6 N -0.189 5.189 7 C -0.032 4.032 8 C -0.022 4.022 9 C -0.563 4.563 10 H 0.078 0.922 11 C -0.141 4.141 12 N -0.528 5.528 13 Si 0.725 3.275 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.322 3.678 18 O -0.408 6.408 19 C -0.219 4.219 20 Cl -0.018 7.018 21 H 0.100 0.900 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.164 0.836 25 H 0.105 0.895 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.010 4.840 -8.083 16.063 hybrid contribution 0.880 -0.126 0.219 0.916 sum -12.129 4.714 -7.864 15.205 Atomic orbital electron populations 1.20956 0.90076 1.03794 1.03154 1.19987 0.96847 0.91200 0.89476 1.20126 0.91488 0.97963 1.17992 1.20728 0.92707 0.88311 0.90126 1.21180 1.01051 0.91445 1.05003 1.45843 1.10794 1.05238 1.57027 1.22584 0.73277 1.03536 1.03764 1.19400 0.96493 0.98292 0.88039 1.21013 0.90547 1.51979 0.92759 0.92186 1.24999 0.98822 0.94847 0.95471 1.69980 1.35629 1.49841 0.97391 0.86451 0.85148 0.77687 0.78230 1.19587 1.20913 1.20846 1.16434 0.87644 0.83624 0.80132 1.90996 1.68597 1.29823 1.51403 1.21303 0.92112 0.87883 1.20636 1.98299 1.75468 1.30845 1.97213 0.90024 0.90613 0.90468 0.83563 0.89525 0.88316 0.89623 0.89041 0.89843 0.96083 0.95476 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.64 36.01 0.35 -0.87 16 2 C 0.03 0.41 5.89 -104.52 -0.62 -0.21 16 3 C -0.25 -3.17 9.31 -39.88 -0.37 -3.54 16 4 C 0.19 2.83 6.65 -81.88 -0.54 2.28 16 5 C -0.13 -1.48 8.72 36.00 0.31 -1.17 16 6 N -0.48 -8.99 2.59 -115.12 -0.30 -9.29 16 7 C 0.09 1.79 4.82 -4.04 -0.02 1.77 16 8 C 0.02 0.39 5.29 -27.88 -0.15 0.24 16 9 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 10 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 13 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C 0.52 10.85 7.41 -15.40 -0.11 10.73 16 18 O -0.53 -12.97 16.13 4.86 0.08 -12.89 16 19 C -0.19 -3.28 6.34 -39.32 -0.25 -3.53 16 20 Cl -0.05 -0.76 26.91 -51.86 -1.40 -2.16 16 21 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 23 H 0.08 0.79 6.91 -51.93 -0.36 0.43 16 24 H 0.15 1.31 7.88 -52.49 -0.41 0.90 16 25 H 0.09 0.70 7.81 -51.93 -0.41 0.29 16 26 H 0.10 1.33 7.12 -51.93 -0.37 0.96 16 27 H 0.09 0.88 7.37 -51.93 -0.38 0.50 16 28 H 0.09 2.00 7.39 -51.93 -0.38 1.62 16 29 H 0.08 1.45 6.39 -51.93 -0.33 1.11 16 30 H 0.02 0.54 7.18 -51.93 -0.37 0.17 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 286.90 15.07 4.32 4.32 Total: -1.00 -32.98 286.90 -7.21 -40.20 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -3.83 Total: -3.37 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.81 Total: -7.34 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.44 Total: -34.95 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.40 Total: -2.16 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.98 -7.21 -40.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919254813.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.240 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds