Wall clock time and date at job start Mon Mar 30 2020 06:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99610 * 2 1 4 4 H 1.48504 * 109.47191 * 239.99357 * 3 2 1 5 5 H 1.48502 * 109.47218 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47289 * 120.00035 * 3 2 1 7 7 C 1.38813 * 120.00430 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99709 * 201.25857 * 7 2 1 9 9 N 1.36939 * 119.99610 * 21.26086 * 7 2 1 10 10 C 1.46491 * 120.00101 * 37.42017 * 9 7 2 11 11 C 1.53003 * 109.47214 * 89.99780 * 10 9 7 12 12 C 1.50697 * 109.47332 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00119 * 0.02562 * 12 11 10 14 14 O 1.34229 * 119.99970 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99767 * 217.41971 * 9 7 2 16 16 C 1.54251 * 108.89470 * 57.66767 * 15 9 7 17 17 C 1.50474 * 108.52269 * 159.26583 * 16 15 9 18 18 C 1.54069 * 112.50100 * 94.14945 * 17 16 15 19 19 C 1.54061 * 112.81700 * 318.28446 * 18 17 16 20 20 C 1.50481 * 112.49517 * 318.28390 * 19 18 17 21 21 C 1.45543 * 108.89747 * 294.78735 * 15 9 7 22 22 H 0.97001 * 119.99891 * 354.93207 * 1 2 3 23 23 H 1.08998 * 109.47338 * 209.99830 * 10 9 7 24 24 H 1.09001 * 109.47319 * 330.00052 * 10 9 7 25 25 H 1.08998 * 109.47008 * 300.00251 * 11 10 9 26 26 H 1.09001 * 109.46756 * 59.99926 * 11 10 9 27 27 H 0.96708 * 116.99777 * 180.02562 * 14 12 11 28 28 H 1.08994 * 108.87529 * 176.18079 * 15 9 7 29 29 H 1.08996 * 109.62436 * 278.97592 * 16 15 9 30 30 H 1.08992 * 109.62599 * 39.55284 * 16 15 9 31 31 H 1.09003 * 108.87225 * 333.36952 * 17 16 15 32 32 H 1.09002 * 108.87344 * 214.92981 * 17 16 15 33 33 H 1.08998 * 108.81149 * 197.41923 * 18 17 16 34 34 H 1.08998 * 108.72600 * 79.08350 * 18 17 16 35 35 H 1.08999 * 108.88006 * 197.51017 * 19 18 17 36 36 H 1.08999 * 108.87862 * 79.05962 * 19 18 17 37 37 H 1.09003 * 109.62872 * 334.44239 * 20 19 18 38 38 H 1.09000 * 109.62797 * 213.86761 * 20 19 18 39 39 H 1.09003 * 108.88942 * 303.44307 * 21 15 9 40 40 H 1.08998 * 108.89838 * 62.02747 * 21 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0353 -1.2336 0.3397 9 7 1.3956 -2.3479 -0.4290 10 6 0.4659 -2.3004 -1.5601 11 6 1.2353 -2.5297 -2.8626 12 6 0.2789 -2.4815 -4.0262 13 8 -0.8974 -2.2836 -3.8336 14 8 0.7338 -2.6585 -5.2766 15 6 1.6676 -3.6211 0.2427 16 6 1.3143 -3.4825 1.7378 17 6 1.0996 -4.8585 2.3077 18 6 2.3734 -5.4335 2.9561 19 6 3.6432 -5.1529 2.1299 20 6 3.4226 -5.3415 0.6533 21 6 3.0636 -3.9757 0.0333 22 1 -0.4850 0.8368 0.0742 23 1 -0.2893 -3.0776 -1.4426 24 1 -0.0187 -1.3246 -1.5915 25 1 1.9905 -1.7526 -2.9801 26 1 1.7200 -3.5055 -2.8313 27 1 0.0825 -2.6186 -5.9904 28 1 1.0373 -4.3937 -0.1974 29 1 2.1334 -2.9921 2.2636 30 1 0.4025 -2.8952 1.8456 31 1 0.7792 -5.5256 1.5074 32 1 0.3122 -4.8097 3.0599 33 1 2.2562 -6.5117 3.0654 34 1 2.4928 -4.9914 3.9452 35 1 4.4335 -5.8283 2.4574 36 1 3.9618 -4.1264 2.3106 37 1 2.6044 -6.0434 0.4920 38 1 4.3334 -5.7245 0.1931 39 1 3.2617 -4.0113 -1.0380 40 1 3.6940 -3.2087 0.4831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071737880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:45 Heat of formation + Delta-G solvation = -93.997335 kcal Electronic energy + Delta-G solvation = -20195.783693 eV Core-core repulsion = 17203.230123 eV Total energy + Delta-G solvation = -2992.553569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.67662 -38.57478 -35.80608 -35.17756 -31.86298 -31.47407 -31.27701 -28.51724 -24.88139 -24.20285 -23.86620 -21.77306 -19.91040 -19.64926 -18.74176 -17.62096 -16.44515 -15.86243 -15.52053 -15.16923 -14.71940 -14.11847 -14.09708 -13.50781 -13.32351 -12.89689 -12.42083 -12.36545 -12.18381 -11.80882 -11.52191 -11.43722 -11.06840 -10.96405 -10.85019 -10.59601 -10.45567 -10.21949 -10.17991 -10.00765 -9.92093 -9.82777 -9.60584 -9.58281 -9.27179 -8.46717 -6.53404 -5.78259 -3.34339 2.78234 3.35863 3.43574 3.44416 3.61386 4.47758 5.06388 5.22547 5.27854 5.35003 5.49869 5.68395 5.79801 5.80494 5.87635 5.92852 5.98341 6.10143 6.14823 6.24141 6.26307 6.46143 6.54764 6.58815 6.59779 6.64323 6.73066 6.80084 6.89954 6.99044 7.00565 7.07221 7.32940 7.46031 7.75036 7.88423 8.40583 8.56231 9.20157 9.82993 10.41460 11.23985 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.008573 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.558825 B = 3265.247428 C = 4498.734290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.016 3.984 3 Si 0.893 3.107 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.261 4.261 8 H 0.061 0.939 9 N -0.580 5.580 10 C 0.159 3.841 11 C -0.131 4.131 12 C 0.476 3.524 13 O -0.517 6.517 14 O -0.529 6.529 15 C 0.175 3.825 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.122 4.122 22 H 0.257 0.743 23 H 0.032 0.968 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.397 0.603 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -9.043 -1.550 10.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.185 4.185 3 Si 0.723 3.277 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.391 4.391 8 H 0.078 0.922 9 N -0.300 5.300 10 C 0.031 3.969 11 C -0.172 4.172 12 C 0.319 3.681 13 O -0.405 6.405 14 O -0.341 6.341 15 C 0.069 3.931 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.150 4.150 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.161 4.161 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.122 0.878 25 H 0.118 0.882 26 H 0.103 0.897 27 H 0.254 0.746 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.191 -8.847 -1.196 9.863 hybrid contribution 0.049 0.961 -0.508 1.088 sum 4.240 -7.886 -1.704 9.115 Atomic orbital electron populations 1.69887 1.05501 1.26108 1.51054 1.25220 0.94985 0.98587 0.99699 0.86530 0.79227 0.83699 0.78273 1.20904 1.21700 1.20752 1.18856 0.94240 0.85087 1.40893 0.92151 1.43960 1.51996 1.03331 1.30685 1.20790 0.90129 1.03934 0.82011 1.22448 0.98904 1.03956 0.91896 1.24305 0.89257 0.71233 0.83332 1.90684 1.19295 1.44989 1.85516 1.84642 1.46484 1.84887 1.18058 1.19377 0.93550 0.88437 0.91760 1.21616 1.02369 0.94365 0.96896 1.21379 0.96298 0.98246 0.99528 1.21887 0.95025 0.99460 0.98636 1.21315 0.96838 1.01647 0.95526 1.21306 1.00397 0.98327 0.95312 1.20973 0.99846 0.95301 0.99936 0.93300 0.94977 0.87784 0.88177 0.89734 0.74610 0.94147 0.92354 0.91278 0.92870 0.93332 0.93313 0.92943 0.93462 0.91868 0.92289 0.92963 0.93135 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.01 11.45 55.49 0.64 -24.37 16 2 C 0.02 0.43 4.96 -17.43 -0.09 0.34 16 3 Si 0.89 21.11 29.61 -169.99 -5.03 16.08 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -6.66 8.43 -15.06 -0.13 -6.79 16 8 H 0.06 1.55 6.99 -52.49 -0.37 1.18 16 9 N -0.58 -13.47 2.28 -168.96 -0.39 -13.86 16 10 C 0.16 3.67 4.56 -4.05 -0.02 3.65 16 11 C -0.13 -2.53 6.13 -27.88 -0.17 -2.70 16 12 C 0.48 8.79 8.33 36.00 0.30 9.09 16 13 O -0.52 -11.16 16.74 -18.75 -0.31 -11.48 16 14 O -0.53 -7.73 13.42 -39.25 -0.53 -8.26 16 15 C 0.17 3.44 2.13 -70.79 -0.15 3.29 16 16 C -0.11 -2.20 4.54 -27.34 -0.12 -2.32 16 17 C -0.12 -1.82 5.31 -27.43 -0.15 -1.97 16 18 C -0.11 -1.53 5.85 -25.62 -0.15 -1.68 16 19 C -0.12 -1.59 5.31 -27.44 -0.15 -1.73 16 20 C -0.12 -1.64 5.61 -27.34 -0.15 -1.79 16 21 C -0.12 -2.11 4.51 -29.60 -0.13 -2.25 16 22 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 23 H 0.03 0.74 7.83 -51.93 -0.41 0.34 16 24 H 0.10 2.81 5.46 -51.93 -0.28 2.53 16 25 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.40 3.92 9.10 45.56 0.41 4.34 16 28 H 0.04 0.78 7.05 -51.93 -0.37 0.42 16 29 H 0.06 1.17 6.98 -51.93 -0.36 0.81 16 30 H 0.07 1.57 8.12 -51.93 -0.42 1.15 16 31 H 0.05 0.81 6.63 -51.93 -0.34 0.47 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.95 6.63 -51.93 -0.34 0.60 16 37 H 0.06 0.82 6.98 -51.93 -0.36 0.46 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.20 6.36 -51.93 -0.33 0.87 16 LS Contribution 312.08 15.07 4.70 4.70 Total: -1.00 -29.19 312.08 -7.72 -36.91 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.69 Total: 5.12 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.11 Total: -4.84 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.25 Total: -38.23 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.84 Total: -19.73 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.19 -7.72 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071737880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.090 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds