Wall clock time and date at job start Mon Mar 30 2020 06:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99610 * 2 1 4 4 H 1.48504 * 109.47191 * 239.99357 * 3 2 1 5 5 H 1.48502 * 109.47218 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47289 * 120.00035 * 3 2 1 7 7 C 1.38813 * 120.00430 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99709 * 201.25857 * 7 2 1 9 9 N 1.36939 * 119.99610 * 21.26086 * 7 2 1 10 10 C 1.46491 * 120.00101 * 37.42017 * 9 7 2 11 11 C 1.53003 * 109.47214 * 89.99780 * 10 9 7 12 12 C 1.50697 * 109.47332 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00119 * 0.02562 * 12 11 10 14 14 O 1.34229 * 119.99970 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99767 * 217.41971 * 9 7 2 16 16 C 1.54251 * 108.89470 * 57.66767 * 15 9 7 17 17 C 1.50474 * 108.52269 * 159.26583 * 16 15 9 18 18 C 1.54069 * 112.50100 * 94.14945 * 17 16 15 19 19 C 1.54061 * 112.81700 * 318.28446 * 18 17 16 20 20 C 1.50481 * 112.49517 * 318.28390 * 19 18 17 21 21 C 1.45543 * 108.89747 * 294.78735 * 15 9 7 22 22 H 0.97001 * 119.99891 * 354.93207 * 1 2 3 23 23 H 1.08998 * 109.47338 * 209.99830 * 10 9 7 24 24 H 1.09001 * 109.47319 * 330.00052 * 10 9 7 25 25 H 1.08998 * 109.47008 * 300.00251 * 11 10 9 26 26 H 1.09001 * 109.46756 * 59.99926 * 11 10 9 27 27 H 0.96708 * 116.99777 * 180.02562 * 14 12 11 28 28 H 1.08994 * 108.87529 * 176.18079 * 15 9 7 29 29 H 1.08996 * 109.62436 * 278.97592 * 16 15 9 30 30 H 1.08992 * 109.62599 * 39.55284 * 16 15 9 31 31 H 1.09003 * 108.87225 * 333.36952 * 17 16 15 32 32 H 1.09002 * 108.87344 * 214.92981 * 17 16 15 33 33 H 1.08998 * 108.81149 * 197.41923 * 18 17 16 34 34 H 1.08998 * 108.72600 * 79.08350 * 18 17 16 35 35 H 1.08999 * 108.88006 * 197.51017 * 19 18 17 36 36 H 1.08999 * 108.87862 * 79.05962 * 19 18 17 37 37 H 1.09003 * 109.62872 * 334.44239 * 20 19 18 38 38 H 1.09000 * 109.62797 * 213.86761 * 20 19 18 39 39 H 1.09003 * 108.88942 * 303.44307 * 21 15 9 40 40 H 1.08998 * 108.89838 * 62.02747 * 21 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0353 -1.2336 0.3397 9 7 1.3956 -2.3479 -0.4290 10 6 0.4659 -2.3004 -1.5601 11 6 1.2353 -2.5297 -2.8626 12 6 0.2789 -2.4815 -4.0262 13 8 -0.8974 -2.2836 -3.8336 14 8 0.7338 -2.6585 -5.2766 15 6 1.6676 -3.6211 0.2427 16 6 1.3143 -3.4825 1.7378 17 6 1.0996 -4.8585 2.3077 18 6 2.3734 -5.4335 2.9561 19 6 3.6432 -5.1529 2.1299 20 6 3.4226 -5.3415 0.6533 21 6 3.0636 -3.9757 0.0333 22 1 -0.4850 0.8368 0.0742 23 1 -0.2893 -3.0776 -1.4426 24 1 -0.0187 -1.3246 -1.5915 25 1 1.9905 -1.7526 -2.9801 26 1 1.7200 -3.5055 -2.8313 27 1 0.0825 -2.6186 -5.9904 28 1 1.0373 -4.3937 -0.1974 29 1 2.1334 -2.9921 2.2636 30 1 0.4025 -2.8952 1.8456 31 1 0.7792 -5.5256 1.5074 32 1 0.3122 -4.8097 3.0599 33 1 2.2562 -6.5117 3.0654 34 1 2.4928 -4.9914 3.9452 35 1 4.4335 -5.8283 2.4574 36 1 3.9618 -4.1264 2.3106 37 1 2.6044 -6.0434 0.4920 38 1 4.3334 -5.7245 0.1931 39 1 3.2617 -4.0113 -1.0380 40 1 3.6940 -3.2087 0.4831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071737880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:45 Heat of formation + Delta-G solvation = -110.949019 kcal Electronic energy + Delta-G solvation = -20196.518773 eV Core-core repulsion = 17203.230123 eV Total energy + Delta-G solvation = -2993.288650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.16172 -40.02367 -37.25130 -36.76186 -33.66449 -32.89008 -32.79334 -30.18783 -26.77720 -25.57678 -25.25036 -23.31011 -21.54959 -21.21789 -19.96618 -19.08425 -18.20529 -17.38039 -17.18662 -16.74424 -16.29149 -15.70402 -15.47927 -14.99700 -14.84551 -14.40481 -13.98902 -13.70994 -13.64578 -13.47057 -12.96598 -12.82180 -12.80435 -12.62764 -12.49148 -12.41935 -12.09253 -11.88788 -11.53988 -11.45676 -11.41678 -11.23366 -11.12001 -11.06090 -10.79605 -10.46089 -8.46873 -7.78976 -5.37835 1.29677 1.46096 1.49286 1.54597 2.22454 2.54477 3.30275 3.61615 3.93300 4.10640 4.21546 4.25353 4.36116 4.45085 4.50173 4.56970 4.61975 4.70880 4.76151 4.90465 4.96312 5.04898 5.10812 5.19104 5.26413 5.36320 5.41857 5.47079 5.51686 5.55430 5.63871 5.68799 5.74265 5.77797 5.83651 5.95558 6.54208 7.08535 7.22631 7.92018 8.45319 9.19918 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.008573 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.558825 B = 3265.247428 C = 4498.734290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.036 4.036 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.060 0.940 9 N -0.594 5.594 10 C 0.163 3.837 11 C -0.120 4.120 12 C 0.488 3.512 13 O -0.554 6.554 14 O -0.512 6.512 15 C 0.173 3.827 16 C -0.104 4.104 17 C -0.112 4.112 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.107 4.107 21 C -0.114 4.114 22 H 0.248 0.752 23 H 0.022 0.978 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.422 0.578 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.023 0.977 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.232 -11.041 -2.063 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.233 4.233 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.078 0.922 9 N -0.314 5.314 10 C 0.036 3.964 11 C -0.161 4.161 12 C 0.332 3.668 13 O -0.445 6.445 14 O -0.326 6.326 15 C 0.068 3.932 16 C -0.143 4.143 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.154 4.154 20 C -0.145 4.145 21 C -0.153 4.153 22 H 0.058 0.942 23 H 0.040 0.960 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.128 0.872 27 H 0.283 0.717 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.087 -10.873 -1.740 12.582 hybrid contribution -0.540 1.523 -0.404 1.666 sum 5.547 -9.350 -2.144 11.081 Atomic orbital electron populations 1.70052 1.06890 1.25963 1.53468 1.25842 0.95496 1.01338 1.00624 0.85645 0.77924 0.80242 0.78511 1.20240 1.22691 1.20088 1.19028 0.94084 0.85891 1.38999 0.92213 1.44178 1.51640 1.04071 1.31497 1.20501 0.90397 1.01366 0.84178 1.22081 0.98199 1.05190 0.90599 1.23912 0.88176 0.70412 0.84335 1.90689 1.20723 1.46825 1.86275 1.84544 1.46917 1.83847 1.17268 1.19568 0.95292 0.86913 0.91394 1.21457 0.99492 0.96167 0.97162 1.21305 0.98032 0.95810 0.99879 1.21859 0.93551 1.00796 0.98389 1.21318 0.97572 1.01222 0.95264 1.21262 1.01660 0.96097 0.95457 1.20837 0.97360 0.96958 1.00182 0.94218 0.95983 0.91757 0.88526 0.87175 0.71674 0.93671 0.93638 0.95771 0.92140 0.93004 0.90811 0.92655 0.90885 0.93752 0.91440 0.90825 0.93016 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.35 11.45 21.65 0.25 -54.10 16 2 C -0.04 -1.96 4.96 84.86 0.42 -1.54 16 3 Si 0.95 44.28 29.61 68.60 2.03 46.31 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.25 -12.97 8.43 84.03 0.71 -12.27 16 8 H 0.06 3.09 6.99 -2.91 -0.02 3.07 16 9 N -0.59 -28.05 2.28 -688.47 -1.57 -29.62 16 10 C 0.16 7.70 4.56 86.38 0.39 8.10 16 11 C -0.12 -4.54 6.13 29.85 0.18 -4.36 16 12 C 0.49 17.45 8.33 71.23 0.59 18.04 16 13 O -0.55 -23.94 16.74 21.97 0.37 -23.58 16 14 O -0.51 -13.56 13.42 -51.41 -0.69 -14.25 16 15 C 0.17 6.79 2.13 43.14 0.09 6.89 16 16 C -0.10 -4.08 4.54 30.20 0.14 -3.94 16 17 C -0.11 -3.36 5.31 30.14 0.16 -3.20 16 18 C -0.11 -2.63 5.85 31.31 0.18 -2.44 16 19 C -0.12 -2.83 5.31 30.14 0.16 -2.67 16 20 C -0.11 -2.68 5.61 30.20 0.17 -2.51 16 21 C -0.11 -3.81 4.51 28.73 0.13 -3.68 16 22 H 0.25 14.48 8.32 -92.71 -0.77 13.71 16 23 H 0.02 1.05 7.83 -2.39 -0.02 1.03 16 24 H 0.06 3.63 5.46 -2.39 -0.01 3.62 16 25 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 26 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 27 H 0.42 7.05 9.10 -74.05 -0.67 6.37 16 28 H 0.05 1.72 7.05 -2.39 -0.02 1.70 16 29 H 0.04 1.86 6.98 -2.39 -0.02 1.85 16 30 H 0.02 1.13 8.12 -2.39 -0.02 1.11 16 31 H 0.06 1.72 6.63 -2.39 -0.02 1.71 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 1.25 6.63 -2.39 -0.02 1.24 16 37 H 0.07 1.62 6.98 -2.39 -0.02 1.60 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.04 1.64 6.36 -2.39 -0.02 1.63 16 Total: -1.00 -65.28 312.08 4.07 -61.21 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.35 Total: 17.62 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 3.33 Total: -3.58 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -1.32 Total: -83.72 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.32 Total: -37.83 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -65.28 4.07 -61.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071737880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.743 kcal (2) G-P(sol) polarization free energy of solvation -65.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds