Wall clock time and date at job start Mon Mar 30 2020 06:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47422 * 2 1 4 4 C 1.53002 * 109.47307 * 120.00053 * 2 1 3 5 5 O 1.45195 * 109.47128 * 174.99772 * 4 2 1 6 6 C 1.34666 * 116.99817 * 179.97438 * 5 4 2 7 7 O 1.21506 * 120.00014 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99975 * 180.02562 * 6 5 4 9 9 C 1.37186 * 119.99965 * 180.27914 * 8 6 5 10 10 H 1.08002 * 119.99983 * 329.47154 * 9 8 6 11 11 C 1.38884 * 120.00279 * 149.47230 * 9 8 6 12 12 N 1.31464 * 119.99876 * 342.16119 * 11 9 8 13 13 Si 1.86805 * 120.00082 * 162.15614 * 11 9 8 14 14 H 1.48497 * 109.47273 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46929 * 120.00550 * 13 11 9 16 16 H 1.48500 * 109.47124 * 239.99908 * 13 11 9 17 17 C 1.46502 * 120.00032 * 0.02562 * 8 6 5 18 18 C 1.54264 * 110.02993 * 57.17026 * 17 8 6 19 19 C 1.54967 * 104.15917 * 217.13616 * 18 17 8 20 20 C 1.54884 * 102.77798 * 37.89093 * 19 18 17 21 21 C 1.53873 * 110.03260 * 299.95708 * 17 8 6 22 22 H 1.08998 * 109.47175 * 300.00057 * 1 2 3 23 23 H 1.09001 * 109.47043 * 59.99783 * 1 2 3 24 24 H 1.08994 * 109.47384 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47248 * 240.00202 * 2 1 3 26 26 H 1.09002 * 109.47074 * 300.00902 * 3 2 1 27 27 H 1.09007 * 109.46744 * 59.99894 * 3 2 1 28 28 H 1.08996 * 109.47481 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46838 * 54.99876 * 4 2 1 30 30 H 1.08998 * 109.46924 * 294.99872 * 4 2 1 31 31 H 0.97005 * 119.99973 * 179.97438 * 12 11 9 32 32 H 1.08991 * 110.01590 * 178.55974 * 17 8 6 33 33 H 1.09001 * 110.48955 * 335.78745 * 18 17 8 34 34 H 1.09001 * 110.48490 * 98.42933 * 18 17 8 35 35 H 1.08997 * 110.72170 * 279.57371 * 19 18 17 36 36 H 1.09004 * 110.91891 * 156.29909 * 19 18 17 37 37 H 1.08994 * 110.48645 * 203.40367 * 20 19 18 38 38 H 1.09001 * 110.59894 * 80.81859 * 20 19 18 39 39 H 1.08999 * 110.03116 * 238.56901 * 21 17 8 40 40 H 1.09002 * 110.03145 * 359.97438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 3.4871 -0.8255 1.1910 6 6 4.0979 -1.4384 2.2229 7 8 3.4395 -1.8746 3.1464 8 7 5.4394 -1.5680 2.2313 9 6 6.0611 -2.1975 3.2798 10 1 5.6295 -2.1534 4.2688 11 6 7.2457 -2.8914 3.0694 12 7 7.5911 -3.2483 1.8523 13 14 8.3482 -3.3173 4.5160 14 1 7.7383 -2.8073 5.7703 15 1 8.5013 -4.7918 4.6044 16 1 9.6813 -2.6920 4.3234 17 6 6.2332 -1.0416 1.1182 18 6 5.9618 0.4668 0.9425 19 6 5.9849 0.6799 -0.5922 20 6 5.2993 -0.6020 -1.1265 21 6 5.8125 -1.7210 -0.1968 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9564 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6054 -1.7198 1.2951 30 1 1.7517 -0.1583 2.1369 31 1 8.4186 -3.7327 1.7053 32 1 7.2938 -1.2111 1.3034 33 1 4.9850 0.7286 1.3492 34 1 6.7454 1.0537 1.4218 35 1 7.0098 0.7502 -0.9564 36 1 5.4159 1.5670 -0.8706 37 1 5.5994 -0.7942 -2.1565 38 1 4.2150 -0.5148 -1.0560 39 1 6.6692 -2.2195 -0.6502 40 1 5.0180 -2.4427 -0.0067 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080213904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:33 Heat of formation + Delta-G solvation = -113.257568 kcal Electronic energy + Delta-G solvation = -20829.157244 eV Core-core repulsion = 17835.768488 eV Total energy + Delta-G solvation = -2993.388756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.39686 -38.94831 -37.80235 -35.91462 -35.49897 -33.38023 -29.41438 -28.64972 -27.99676 -27.90230 -26.24929 -22.63390 -21.44621 -21.16008 -21.05656 -19.19509 -18.24272 -17.63664 -17.18429 -16.52431 -16.27602 -15.66659 -15.52089 -15.28133 -14.56545 -14.33070 -14.00603 -13.67553 -13.54871 -13.30570 -13.15746 -12.96135 -12.82192 -12.43938 -12.10739 -12.00734 -11.95600 -11.93324 -11.78748 -11.75283 -11.64469 -11.51665 -11.30728 -11.20026 -10.98729 -10.79947 -9.55922 -8.36135 -6.03997 1.38872 1.40768 1.54113 1.83544 2.16950 2.42880 3.04065 3.49437 3.88071 3.95176 3.97063 4.02542 4.19285 4.35242 4.47735 4.56974 4.69751 4.76100 4.83497 4.86317 4.87244 4.89907 5.01266 5.02773 5.06265 5.16156 5.21704 5.24902 5.31269 5.35824 5.45188 5.48157 5.58827 5.65720 5.71468 5.72782 6.20752 6.48391 7.12341 7.41445 8.11091 8.70029 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026650 B = 0.007475 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.389727 B = 3745.156013 C = 4384.065715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.143 4.143 4 C 0.080 3.920 5 O -0.352 6.352 6 C 0.586 3.414 7 O -0.656 6.656 8 N -0.432 5.432 9 C -0.340 4.340 10 H 0.068 0.932 11 C 0.002 3.998 12 N -0.884 5.884 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.277 1.277 16 H -0.262 1.262 17 C 0.154 3.846 18 C -0.135 4.135 19 C -0.102 4.102 20 C -0.111 4.111 21 C -0.097 4.097 22 H 0.058 0.942 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.274 0.726 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 9.054 -8.786 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 C -0.200 4.200 4 C 0.005 3.995 5 O -0.265 6.265 6 C 0.342 3.658 7 O -0.554 6.554 8 N -0.159 5.159 9 C -0.467 4.467 10 H 0.086 0.914 11 C -0.201 4.201 12 N -0.521 5.521 13 Si 0.815 3.185 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.187 1.187 17 C 0.050 3.950 18 C -0.173 4.173 19 C -0.140 4.140 20 C -0.149 4.149 21 C -0.136 4.136 22 H 0.077 0.923 23 H 0.104 0.896 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.238 8.858 -8.668 13.454 hybrid contribution 0.385 -0.940 1.226 1.592 sum -4.852 7.918 -7.441 11.900 Atomic orbital electron populations 1.21757 0.92164 1.02447 1.03309 1.21160 0.96905 0.96946 0.95376 1.21821 1.01404 0.94426 1.02382 1.23099 0.76640 0.99866 0.99889 1.86369 1.23126 1.73839 1.43210 1.18765 0.84174 0.80698 0.82166 1.90726 1.65479 1.58664 1.40491 1.42959 0.99763 1.51858 1.21279 1.19511 1.06386 1.32881 0.87934 0.91362 1.26133 0.99366 0.94159 1.00400 1.70112 1.24234 1.35968 1.21763 0.84910 0.77910 0.77919 0.77730 1.19703 1.20230 1.18700 1.21697 0.96357 0.91714 0.85209 1.22849 1.01041 0.95004 0.98414 1.22329 1.00987 0.97890 0.92752 1.22325 1.00551 0.94060 0.97962 1.22089 0.98709 0.97447 0.95333 0.92297 0.89622 0.92576 0.90068 0.90287 0.93064 0.92928 0.93825 0.93272 0.91653 0.89847 0.92083 0.92109 0.90870 0.89693 0.90703 0.91218 0.92867 0.95833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.19 71.98 0.66 -2.00 16 2 C -0.09 -2.12 3.16 -10.79 -0.03 -2.15 16 3 C -0.14 -3.19 9.09 71.98 0.65 -2.54 16 4 C 0.08 2.87 4.85 71.98 0.35 3.22 16 5 O -0.35 -15.10 4.68 -55.76 -0.26 -15.36 16 6 C 0.59 31.73 7.13 129.79 0.92 32.65 16 7 O -0.66 -40.06 15.91 19.82 0.32 -39.74 16 8 N -0.43 -23.67 2.53 -738.34 -1.87 -25.54 16 9 C -0.34 -19.98 9.09 84.01 0.76 -19.22 16 10 H 0.07 4.27 7.60 -2.91 -0.02 4.25 16 11 C 0.00 0.12 4.87 84.90 0.41 0.54 16 12 N -0.88 -47.60 11.05 21.65 0.24 -47.36 16 13 Si 0.99 42.84 29.59 68.60 2.03 44.87 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 16 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 17 C 0.15 7.13 2.31 45.71 0.11 7.24 16 18 C -0.13 -5.05 6.05 31.70 0.19 -4.86 16 19 C -0.10 -2.93 6.91 31.91 0.22 -2.71 16 20 C -0.11 -3.51 6.35 31.67 0.20 -3.31 16 21 C -0.10 -4.11 5.51 31.32 0.17 -3.94 16 22 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.08 2.00 7.87 -2.38 -0.02 1.98 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.05 1.34 7.82 -2.39 -0.02 1.32 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.27 13.69 8.31 -92.70 -0.77 12.92 16 32 H 0.08 4.25 5.95 -2.39 -0.01 4.23 16 33 H 0.06 2.43 5.97 -2.39 -0.01 2.41 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.19 6.76 -2.39 -0.02 2.17 16 39 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.02 1.13 7.15 -2.39 -0.02 1.11 16 Total: -1.00 -68.41 314.72 6.08 -62.33 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 1.00 Total: 17.87 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 4.62 Total: 2.93 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -1.63 Total: -72.90 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: 0.05 Total: -55.11 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -68.41 6.08 -62.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080213904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.926 kcal (2) G-P(sol) polarization free energy of solvation -68.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds