Wall clock time and date at job start Mon Mar 30 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99810 * 2 1 4 4 H 1.48497 * 109.47315 * 89.99564 * 3 2 1 5 5 H 1.48498 * 109.47110 * 209.99671 * 3 2 1 6 6 H 1.48499 * 109.46774 * 329.99572 * 3 2 1 7 7 C 1.37874 * 120.00112 * 180.27142 * 2 1 3 8 8 H 1.08000 * 120.00016 * 179.72716 * 7 2 1 9 9 C 1.50699 * 120.00369 * 359.72560 * 7 2 1 10 10 C 1.52994 * 109.47434 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47042 * 179.97438 * 10 9 7 12 12 N 1.46910 * 109.47225 * 180.02562 * 11 10 9 13 13 C 1.39777 * 110.99622 * 73.26284 * 12 11 10 14 14 C 1.54440 * 111.76466 * 189.12791 * 13 12 11 15 15 C 1.50754 * 109.02674 * 282.59238 * 14 13 12 16 16 C 1.54172 * 112.60719 * 93.02166 * 15 14 13 17 17 C 1.53821 * 111.97050 * 318.48378 * 16 15 14 18 18 C 1.47623 * 111.00213 * 202.16130 * 12 11 10 19 19 H 1.09010 * 109.74639 * 269.98614 * 18 12 11 20 20 C 1.50704 * 109.74772 * 30.70216 * 18 12 11 21 21 O 1.20819 * 119.99893 * 48.36708 * 20 18 12 22 22 O 1.34227 * 120.00067 * 228.35942 * 20 18 12 23 23 H 0.97002 * 119.99813 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47258 * 300.00445 * 9 7 2 25 25 H 1.09004 * 109.46496 * 59.99689 * 9 7 2 26 26 H 1.09000 * 109.47453 * 300.00560 * 10 9 7 27 27 H 1.09010 * 109.46985 * 60.00173 * 10 9 7 28 28 H 1.08995 * 109.47543 * 300.00129 * 11 10 9 29 29 H 1.08998 * 109.47352 * 60.00521 * 11 10 9 30 30 H 1.08998 * 109.02459 * 309.71652 * 13 12 11 31 31 H 1.09003 * 109.01830 * 68.54459 * 13 12 11 32 32 H 1.09000 * 109.54154 * 42.45636 * 14 13 12 33 33 H 1.08996 * 109.54040 * 162.63872 * 14 13 12 34 34 H 1.08997 * 108.85170 * 213.82821 * 15 14 13 35 35 H 1.08998 * 108.85411 * 332.31733 * 15 14 13 36 36 H 1.08997 * 108.98112 * 79.12829 * 16 15 14 37 37 H 1.08998 * 108.97780 * 197.93313 * 16 15 14 38 38 H 1.09000 * 109.04940 * 79.59192 * 17 16 15 39 39 H 1.08999 * 109.05090 * 198.56424 * 17 16 15 40 40 H 0.96706 * 117.00055 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 1.4000 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6526 -0.7001 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0101 9 6 1.2511 -2.4992 -0.0056 10 6 2.2454 -3.6620 -0.0131 11 6 1.4804 -4.9870 -0.0124 12 7 2.4351 -6.1036 -0.0189 13 6 3.0518 -6.2426 1.2277 14 6 4.2156 -7.2567 1.1809 15 6 3.6503 -8.6542 1.1855 16 6 3.4524 -9.2182 -0.2356 17 6 2.8789 -8.1643 -1.1982 18 6 1.8064 -7.3341 -0.5385 19 1 1.3599 -7.8947 0.2829 20 6 0.7459 -6.9770 -1.5479 21 8 0.9929 -6.1903 -2.4310 22 8 -0.4730 -7.5330 -1.4660 23 1 -0.4850 -0.8401 0.0004 24 1 0.6281 -2.5590 0.8868 25 1 0.6208 -2.5547 -0.8931 26 1 2.8681 -3.6019 -0.9057 27 1 2.8761 -3.6065 0.8743 28 1 0.8581 -5.0468 0.8805 29 1 0.8495 -5.0428 -0.8994 30 1 3.4376 -5.2733 1.5433 31 1 2.3131 -6.5829 1.9534 32 1 4.7979 -7.1018 0.2726 33 1 4.8554 -7.1178 2.0524 34 1 4.3304 -9.3075 1.7322 35 1 2.6872 -8.6429 1.6958 36 1 4.4136 -9.5617 -0.6178 37 1 2.7668 -10.0642 -0.1890 38 1 3.6842 -7.5080 -1.5280 39 1 2.4536 -8.6689 -2.0658 40 1 -1.1202 -7.2727 -2.1358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080992496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:47 Heat of formation + Delta-G solvation = -101.200242 kcal Electronic energy + Delta-G solvation = -19868.381980 eV Core-core repulsion = 16875.516069 eV Total energy + Delta-G solvation = -2992.865911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.02806 -38.84607 -36.18837 -35.42588 -33.61786 -32.51993 -31.11084 -27.44362 -26.29273 -25.01622 -22.77134 -22.62499 -20.76249 -20.01252 -19.49762 -18.22668 -17.17628 -16.54327 -16.18072 -15.35648 -14.91442 -14.84272 -14.48881 -13.96949 -13.77726 -13.67235 -13.15184 -12.98123 -12.42834 -12.20311 -11.94608 -11.89997 -11.52922 -11.37061 -11.12735 -10.83628 -10.70871 -10.57535 -10.46698 -10.44677 -10.29992 -10.07393 -9.65930 -9.59914 -8.48463 -8.25601 -8.13534 -6.29558 -3.97415 2.11197 2.84546 3.47395 3.52134 3.67797 3.86728 4.58331 4.60765 4.65415 4.78430 4.88774 4.96242 5.16212 5.23145 5.29079 5.47742 5.50459 5.55530 5.62604 5.72589 5.79579 5.83312 5.96722 5.97670 6.04455 6.15928 6.24152 6.30464 6.43802 6.63030 6.66111 7.05330 7.18205 7.44084 7.51067 7.64782 7.86089 8.30802 8.54598 8.96084 9.74811 11.11171 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026763 B = 0.004974 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.973482 B = 5627.723159 C = 6330.833458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 1.072 2.928 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.597 4.597 8 H 0.049 0.951 9 C 0.009 3.991 10 C -0.090 4.090 11 C 0.036 3.964 12 N -0.532 5.532 13 C 0.071 3.929 14 C -0.121 4.121 15 C -0.124 4.124 16 C -0.114 4.114 17 C -0.108 4.108 18 C 0.108 3.892 19 H 0.075 0.925 20 C 0.479 3.521 21 O -0.487 6.487 22 O -0.520 6.520 23 H 0.268 0.732 24 H 0.003 0.997 25 H 0.006 0.994 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.020 0.980 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 -20.598 0.855 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.191 4.191 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.635 4.635 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.128 4.128 11 C -0.090 4.090 12 N -0.258 5.258 13 C -0.058 4.058 14 C -0.159 4.159 15 C -0.161 4.161 16 C -0.151 4.151 17 C -0.146 4.146 18 C 0.000 4.000 19 H 0.093 0.907 20 C 0.320 3.680 21 O -0.373 6.373 22 O -0.332 6.332 23 H 0.078 0.922 24 H 0.021 0.979 25 H 0.024 0.976 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.038 0.962 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 5.086 -18.762 0.602 19.449 hybrid contribution -0.947 -1.699 0.140 1.951 sum 4.138 -20.462 0.742 20.889 Atomic orbital electron populations 1.70747 1.06905 1.30507 1.47115 1.25861 0.96577 1.02739 0.93889 0.83508 0.74706 0.75086 0.76651 1.21528 1.21461 1.21035 1.22072 0.94321 0.91955 1.55191 0.93273 1.19199 0.94716 0.93296 0.95668 1.21445 0.98717 0.91650 1.01022 1.22764 0.94072 0.91218 1.00955 1.58942 1.33445 1.03502 1.29941 1.21097 0.95518 1.00848 0.88346 1.21534 0.97738 0.93659 1.02929 1.21471 1.01132 0.96952 0.96580 1.21896 1.01003 0.97412 0.94829 1.21378 0.98163 0.97184 0.97837 1.20960 0.90846 0.93083 0.95144 0.90681 1.23319 0.82040 0.77338 0.85347 1.90782 1.80456 1.31327 1.34692 1.84537 1.23591 1.67677 1.57434 0.92202 0.97884 0.97568 0.92211 0.93348 0.95195 0.89970 0.89463 0.96178 0.90395 0.91262 0.92032 0.92395 0.91492 0.92126 0.89050 0.91742 0.73045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.10 13.65 55.43 0.76 -28.34 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 26.24 29.90 -169.99 -5.08 21.15 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.60 -17.84 9.11 -34.44 -0.31 -18.15 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.01 0.24 4.28 -27.89 -0.12 0.12 16 10 C -0.09 -2.02 5.20 -26.74 -0.14 -2.16 16 11 C 0.04 0.67 4.53 -3.82 -0.02 0.65 16 12 N -0.53 -8.17 3.83 -233.37 -0.89 -9.06 16 13 C 0.07 0.95 4.78 -6.74 -0.03 0.92 16 14 C -0.12 -1.26 5.65 -27.10 -0.15 -1.41 16 15 C -0.12 -1.10 5.32 -27.24 -0.14 -1.24 16 16 C -0.11 -0.97 5.91 -25.69 -0.15 -1.12 16 17 C -0.11 -1.18 4.97 -27.40 -0.14 -1.31 16 18 C 0.11 1.41 2.32 -69.56 -0.16 1.25 16 19 H 0.08 0.90 6.66 -51.92 -0.35 0.55 16 20 C 0.48 6.92 5.28 36.01 0.19 7.11 16 21 O -0.49 -8.82 15.93 -18.74 -0.30 -9.12 16 22 O -0.52 -5.92 13.42 -39.25 -0.53 -6.45 16 23 H 0.27 8.50 7.22 -40.82 -0.29 8.20 16 24 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16 25 H 0.01 0.17 8.00 -51.93 -0.42 -0.24 16 26 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.05 1.04 6.60 -51.92 -0.34 0.70 16 28 H 0.03 0.55 8.01 -51.93 -0.42 0.14 16 29 H 0.08 1.65 4.51 -51.93 -0.23 1.42 16 30 H 0.09 1.29 6.29 -51.93 -0.33 0.96 16 31 H 0.02 0.26 7.54 -51.93 -0.39 -0.13 16 32 H 0.08 0.87 7.11 -51.93 -0.37 0.50 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 1.13 7.26 -51.93 -0.38 0.75 16 39 H 0.06 0.66 7.71 -51.93 -0.40 0.26 16 40 H 0.41 3.04 9.10 45.56 0.41 3.45 16 LS Contribution 309.93 15.07 4.67 4.67 Total: -1.00 -34.34 309.93 -8.22 -42.56 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.57 Total: -0.35 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -1.28 Total: -15.07 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.14 Total: -37.40 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.83 Total: -15.57 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -5.08 Total: 21.15 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.34 -8.22 -42.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080992496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.638 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds