Wall clock time and date at job start Mon Mar 30 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99810 * 2 1 4 4 H 1.48497 * 109.47315 * 89.99564 * 3 2 1 5 5 H 1.48498 * 109.47110 * 209.99671 * 3 2 1 6 6 H 1.48499 * 109.46774 * 329.99572 * 3 2 1 7 7 C 1.37874 * 120.00112 * 180.27142 * 2 1 3 8 8 H 1.08000 * 120.00016 * 179.72716 * 7 2 1 9 9 C 1.50699 * 120.00369 * 359.72560 * 7 2 1 10 10 C 1.52994 * 109.47434 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47042 * 179.97438 * 10 9 7 12 12 N 1.46910 * 109.47225 * 180.02562 * 11 10 9 13 13 C 1.39777 * 110.99622 * 73.26284 * 12 11 10 14 14 C 1.54440 * 111.76466 * 189.12791 * 13 12 11 15 15 C 1.50754 * 109.02674 * 282.59238 * 14 13 12 16 16 C 1.54172 * 112.60719 * 93.02166 * 15 14 13 17 17 C 1.53821 * 111.97050 * 318.48378 * 16 15 14 18 18 C 1.47623 * 111.00213 * 202.16130 * 12 11 10 19 19 H 1.09010 * 109.74639 * 269.98614 * 18 12 11 20 20 C 1.50704 * 109.74772 * 30.70216 * 18 12 11 21 21 O 1.20819 * 119.99893 * 48.36708 * 20 18 12 22 22 O 1.34227 * 120.00067 * 228.35942 * 20 18 12 23 23 H 0.97002 * 119.99813 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47258 * 300.00445 * 9 7 2 25 25 H 1.09004 * 109.46496 * 59.99689 * 9 7 2 26 26 H 1.09000 * 109.47453 * 300.00560 * 10 9 7 27 27 H 1.09010 * 109.46985 * 60.00173 * 10 9 7 28 28 H 1.08995 * 109.47543 * 300.00129 * 11 10 9 29 29 H 1.08998 * 109.47352 * 60.00521 * 11 10 9 30 30 H 1.08998 * 109.02459 * 309.71652 * 13 12 11 31 31 H 1.09003 * 109.01830 * 68.54459 * 13 12 11 32 32 H 1.09000 * 109.54154 * 42.45636 * 14 13 12 33 33 H 1.08996 * 109.54040 * 162.63872 * 14 13 12 34 34 H 1.08997 * 108.85170 * 213.82821 * 15 14 13 35 35 H 1.08998 * 108.85411 * 332.31733 * 15 14 13 36 36 H 1.08997 * 108.98112 * 79.12829 * 16 15 14 37 37 H 1.08998 * 108.97780 * 197.93313 * 16 15 14 38 38 H 1.09000 * 109.04940 * 79.59192 * 17 16 15 39 39 H 1.08999 * 109.05090 * 198.56424 * 17 16 15 40 40 H 0.96706 * 117.00055 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 1.4000 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6526 -0.7001 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0101 9 6 1.2511 -2.4992 -0.0056 10 6 2.2454 -3.6620 -0.0131 11 6 1.4804 -4.9870 -0.0124 12 7 2.4351 -6.1036 -0.0189 13 6 3.0518 -6.2426 1.2277 14 6 4.2156 -7.2567 1.1809 15 6 3.6503 -8.6542 1.1855 16 6 3.4524 -9.2182 -0.2356 17 6 2.8789 -8.1643 -1.1982 18 6 1.8064 -7.3341 -0.5385 19 1 1.3599 -7.8947 0.2829 20 6 0.7459 -6.9770 -1.5479 21 8 0.9929 -6.1903 -2.4310 22 8 -0.4730 -7.5330 -1.4660 23 1 -0.4850 -0.8401 0.0004 24 1 0.6281 -2.5590 0.8868 25 1 0.6208 -2.5547 -0.8931 26 1 2.8681 -3.6019 -0.9057 27 1 2.8761 -3.6065 0.8743 28 1 0.8581 -5.0468 0.8805 29 1 0.8495 -5.0428 -0.8994 30 1 3.4376 -5.2733 1.5433 31 1 2.3131 -6.5829 1.9534 32 1 4.7979 -7.1018 0.2726 33 1 4.8554 -7.1178 2.0524 34 1 4.3304 -9.3075 1.7322 35 1 2.6872 -8.6429 1.6958 36 1 4.4136 -9.5617 -0.6178 37 1 2.7668 -10.0642 -0.1890 38 1 3.6842 -7.5080 -1.5280 39 1 2.4536 -8.6689 -2.0658 40 1 -1.1202 -7.2727 -2.1358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080992496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:47 Heat of formation + Delta-G solvation = -124.586215 kcal Electronic energy + Delta-G solvation = -19869.396072 eV Core-core repulsion = 16875.516069 eV Total energy + Delta-G solvation = -2993.880003 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.16380 -39.92644 -37.28926 -36.89159 -35.44625 -33.47823 -32.95032 -28.92881 -27.33980 -26.58961 -24.51053 -23.77402 -22.36324 -21.28369 -20.37226 -19.34140 -18.98705 -18.11114 -17.36838 -16.42855 -16.17698 -15.96868 -15.66007 -15.48213 -15.18602 -15.04133 -14.96442 -14.23342 -13.62919 -13.50089 -13.34058 -13.15228 -12.90817 -12.72414 -12.53209 -12.34027 -12.16192 -11.98765 -11.83372 -11.57362 -11.55558 -11.37915 -11.24364 -11.22594 -10.69908 -10.57071 -9.35954 -8.72950 -6.42944 0.96871 1.50347 1.60771 1.78907 1.85831 2.53972 2.67103 3.12735 3.68300 3.79731 3.87372 3.96395 4.05087 4.09290 4.19244 4.23632 4.36281 4.47345 4.52789 4.60973 4.71851 4.74306 4.85423 4.89933 4.95197 5.02402 5.15474 5.21286 5.29316 5.34895 5.39163 5.46370 5.47201 5.53831 5.84764 5.98620 6.14417 6.29695 6.53635 6.84505 7.39665 8.67672 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026763 B = 0.004974 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.973482 B = 5627.723159 C = 6330.833458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.041 4.041 3 Si 1.123 2.877 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.281 1.281 7 C -0.618 4.618 8 H 0.050 0.950 9 C 0.011 3.989 10 C -0.075 4.075 11 C 0.048 3.952 12 N -0.538 5.538 13 C 0.065 3.935 14 C -0.113 4.113 15 C -0.123 4.123 16 C -0.108 4.108 17 C -0.104 4.104 18 C 0.108 3.892 19 H 0.094 0.906 20 C 0.480 3.520 21 O -0.532 6.532 22 O -0.510 6.510 23 H 0.253 0.747 24 H -0.011 1.011 25 H -0.020 1.020 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.826 -22.056 1.633 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.237 4.237 3 Si 0.944 3.056 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.206 1.206 7 C -0.656 4.656 8 H 0.069 0.931 9 C -0.026 4.026 10 C -0.113 4.113 11 C -0.078 4.078 12 N -0.264 5.264 13 C -0.063 4.063 14 C -0.151 4.151 15 C -0.160 4.160 16 C -0.145 4.145 17 C -0.143 4.143 18 C 0.000 4.000 19 H 0.112 0.888 20 C 0.323 3.677 21 O -0.421 6.421 22 O -0.323 6.323 23 H 0.062 0.938 24 H 0.007 0.993 25 H -0.002 1.002 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 6.323 -20.277 1.392 21.286 hybrid contribution -1.405 -1.306 -0.114 1.922 sum 4.919 -21.583 1.279 22.174 Atomic orbital electron populations 1.70891 1.07963 1.29684 1.48920 1.27562 0.96620 1.07041 0.92517 0.82875 0.74088 0.70669 0.78018 1.19323 1.19467 1.20647 1.22491 0.94686 0.93332 1.55095 0.93134 1.19126 0.95063 0.94784 0.93642 1.21190 0.97572 0.92031 1.00532 1.22418 0.94032 0.91066 1.00327 1.58851 1.32721 1.03660 1.31204 1.21210 0.96614 1.01014 0.87484 1.21493 0.96475 0.93820 1.03270 1.21468 1.01474 0.96050 0.97024 1.21891 1.01936 0.96800 0.93923 1.21377 0.96898 0.97261 0.98721 1.21147 0.91321 0.92134 0.95416 0.88817 1.23658 0.82840 0.76382 0.84810 1.90769 1.81363 1.33392 1.36565 1.84495 1.22980 1.66896 1.57949 0.93761 0.99267 1.00166 0.93704 0.92591 0.95117 0.91331 0.91381 0.95500 0.91147 0.89769 0.89948 0.92502 0.90155 0.90477 0.90769 0.91015 0.71022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.70 13.65 21.45 0.29 -60.41 16 2 C -0.04 -2.47 5.46 84.65 0.46 -2.01 16 3 Si 1.12 52.28 29.90 68.60 2.05 54.33 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.62 -37.63 9.11 25.60 0.23 -37.39 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.01 0.64 4.28 29.85 0.13 0.77 16 10 C -0.08 -3.46 5.20 30.59 0.16 -3.30 16 11 C 0.05 1.86 4.53 86.30 0.39 2.25 16 12 N -0.54 -16.31 3.83 -892.25 -3.42 -19.73 16 13 C 0.07 1.68 4.78 88.08 0.42 2.10 16 14 C -0.11 -2.11 5.65 30.35 0.17 -1.94 16 15 C -0.12 -1.77 5.32 30.26 0.16 -1.61 16 16 C -0.11 -1.49 5.91 31.27 0.18 -1.30 16 17 C -0.10 -2.10 4.97 30.16 0.15 -1.95 16 18 C 0.11 2.68 2.32 43.32 0.10 2.78 16 19 H 0.09 2.00 6.66 -2.38 -0.02 1.99 16 20 C 0.48 13.68 5.28 71.24 0.38 14.05 16 21 O -0.53 -19.66 15.93 21.99 0.35 -19.31 16 22 O -0.51 -10.96 13.42 -51.38 -0.69 -11.65 16 23 H 0.25 16.69 7.22 -92.71 -0.67 16.02 16 24 H -0.01 -0.64 8.01 -2.39 -0.02 -0.66 16 25 H -0.02 -1.22 8.00 -2.38 -0.02 -1.24 16 26 H 0.04 2.16 8.14 -2.39 -0.02 2.15 16 27 H 0.06 2.46 6.60 -2.38 -0.02 2.44 16 28 H 0.03 1.15 8.01 -2.39 -0.02 1.13 16 29 H 0.07 2.85 4.51 -2.39 -0.01 2.84 16 30 H 0.07 1.99 6.29 -2.39 -0.02 1.98 16 31 H 0.03 0.66 7.54 -2.39 -0.02 0.64 16 32 H 0.07 1.44 7.11 -2.39 -0.02 1.43 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.85 6.57 -2.39 -0.02 0.84 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 1.77 7.26 -2.39 -0.02 1.75 16 39 H 0.07 1.34 7.71 -2.39 -0.02 1.32 16 40 H 0.43 5.90 9.10 -74.05 -0.67 5.22 16 Total: -1.00 -75.47 309.93 1.98 -73.49 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.46 Total: 10.82 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 2.94 Total: -27.54 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -3.12 Total: -80.14 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.34 Total: -30.96 kcal Atomic # 14 Polarization: 52.28 SS G_CDS: 2.05 Total: 54.33 kcal Total: -75.47 1.98 -73.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080992496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.095 kcal (2) G-P(sol) polarization free energy of solvation -75.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds