Wall clock time and date at job start Mon Mar 30 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99779 * 2 1 4 4 H 1.48504 * 109.47268 * 269.99694 * 3 2 1 5 5 H 1.48495 * 109.47313 * 30.00118 * 3 2 1 6 6 H 1.48506 * 109.47144 * 150.00071 * 3 2 1 7 7 C 1.37875 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00510 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99916 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47108 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47063 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.47335 * 186.37559 * 11 10 9 13 13 C 1.47627 * 110.99887 * 312.41666 * 12 11 10 14 14 C 1.50815 * 108.03647 * 150.30477 * 13 12 11 15 15 C 1.53817 * 111.61641 * 95.06879 * 14 13 12 16 16 C 1.54171 * 111.97096 * 319.05186 * 15 14 13 17 17 C 1.50758 * 112.61184 * 318.47722 * 16 15 14 18 18 C 1.39778 * 111.00367 * 183.51466 * 12 11 10 19 19 H 1.08996 * 108.96529 * 68.58643 * 18 12 11 20 20 C 1.50704 * 109.01987 * 309.72201 * 18 12 11 21 21 O 1.20832 * 120.00113 * 325.83391 * 20 18 12 22 22 O 1.34226 * 120.00076 * 145.83143 * 20 18 12 23 23 H 0.96994 * 119.99948 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47272 * 59.99274 * 9 7 2 25 25 H 1.08999 * 109.46573 * 299.99306 * 9 7 2 26 26 H 1.09003 * 109.47347 * 60.00168 * 10 9 7 27 27 H 1.08999 * 109.47270 * 299.99795 * 10 9 7 28 28 H 1.09007 * 109.47091 * 66.37843 * 11 10 9 29 29 H 1.08998 * 109.47704 * 306.37518 * 11 10 9 30 30 H 1.08995 * 109.75363 * 269.94130 * 13 12 11 31 31 H 1.09002 * 109.74765 * 30.62630 * 13 12 11 32 32 H 1.08998 * 109.05851 * 215.62388 * 14 13 12 33 33 H 1.09007 * 109.05173 * 334.59556 * 14 13 12 34 34 H 1.09000 * 108.98086 * 79.69023 * 15 14 13 35 35 H 1.09000 * 108.98314 * 198.40588 * 15 14 13 36 36 H 1.08996 * 108.85916 * 197.67420 * 16 15 14 37 37 H 1.08997 * 108.85801 * 79.28277 * 16 15 14 38 38 H 1.08995 * 109.54367 * 333.14274 * 17 16 15 39 39 H 1.09001 * 109.54558 * 212.87460 * 17 16 15 40 40 H 0.96700 * 117.00163 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5515 -2.6365 -0.0001 12 7 6.0413 -4.0129 -0.1540 13 6 5.3412 -4.9296 0.7673 14 6 5.2969 -6.2934 0.1249 15 6 6.4601 -7.1811 0.5990 16 6 7.7828 -6.3951 0.6971 17 6 7.9839 -5.4520 -0.4617 18 6 7.4363 -4.0597 -0.0788 19 1 7.7441 -3.8246 0.9400 20 6 8.0134 -3.0302 -1.0159 21 8 7.4551 -2.7815 -2.0583 22 8 9.1478 -2.3894 -0.6927 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6807 0.8904 25 1 3.8752 -0.6797 -0.8895 26 1 3.6586 -3.1502 -0.8903 27 1 3.6579 -3.1505 0.8897 28 1 5.9149 -2.2247 0.9415 29 1 5.9149 -2.0270 -0.8275 30 1 5.8811 -4.9851 1.7125 31 1 4.3269 -4.5714 0.9431 32 1 4.3537 -6.7765 0.3800 33 1 5.3564 -6.1789 -0.9575 34 1 6.2171 -7.5900 1.5797 35 1 6.5879 -8.0038 -0.1046 36 1 8.6117 -7.1023 0.7235 37 1 7.7831 -5.8203 1.6232 38 1 7.4488 -5.8270 -1.3341 39 1 9.0471 -5.3756 -0.6894 40 1 9.4792 -1.7374 -1.3253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080992497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:49 Heat of formation + Delta-G solvation = -92.570182 kcal Electronic energy + Delta-G solvation = -19865.200713 eV Core-core repulsion = 16872.709030 eV Total energy + Delta-G solvation = -2992.491684 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.97723 -38.83672 -36.14611 -35.36529 -33.45855 -32.53817 -31.28733 -27.85043 -26.28527 -25.64833 -22.80161 -22.38236 -20.26841 -20.22100 -19.19947 -18.21154 -17.04875 -16.65050 -15.98752 -15.68480 -15.09202 -14.73779 -14.33177 -14.16044 -13.89128 -13.65243 -13.22483 -12.58887 -12.47723 -12.31786 -12.02479 -11.90190 -11.71311 -11.42475 -11.16409 -10.87847 -10.77135 -10.64183 -10.61228 -10.41187 -10.25297 -9.78319 -9.63226 -9.56496 -9.13133 -8.50158 -8.12551 -6.01066 -3.98553 2.18230 2.84207 3.33707 3.40353 3.44292 3.93715 4.48518 4.53314 4.69714 4.79918 4.98410 5.02348 5.18395 5.27759 5.33219 5.40269 5.49912 5.56447 5.66604 5.69528 5.74492 5.84032 5.97061 6.01660 6.07541 6.13768 6.25777 6.39459 6.44215 6.59128 6.62079 6.93370 7.17718 7.32213 7.39793 7.48815 7.83038 7.92475 8.57742 9.04085 9.61900 11.12507 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.024187 B = 0.005489 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.361377 B = 5099.906979 C = 6011.044440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.098 4.098 11 C 0.044 3.956 12 N -0.545 5.545 13 C 0.060 3.940 14 C -0.122 4.122 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.107 4.107 18 C 0.126 3.874 19 H 0.055 0.945 20 C 0.474 3.526 21 O -0.489 6.489 22 O -0.522 6.522 23 H 0.262 0.738 24 H 0.013 0.987 25 H 0.012 0.988 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.027 0.973 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.026 -11.865 1.888 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.136 4.136 11 C -0.082 4.082 12 N -0.271 5.271 13 C -0.066 4.066 14 C -0.160 4.160 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.145 4.145 18 C 0.015 3.985 19 H 0.072 0.928 20 C 0.314 3.686 21 O -0.374 6.374 22 O -0.334 6.334 23 H 0.072 0.928 24 H 0.031 0.969 25 H 0.030 0.970 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 18.473 -12.122 1.444 22.142 hybrid contribution 0.833 1.736 0.295 1.948 sum 19.306 -10.386 1.740 21.991 Atomic orbital electron populations 1.69915 1.06270 1.26811 1.51401 1.25021 0.94717 0.99126 0.94628 0.86782 0.80285 0.83695 0.78538 1.20265 1.21421 1.19156 1.21128 0.89413 0.94463 1.50514 0.90981 1.19551 0.97218 0.92203 0.96142 1.21585 0.90532 0.99927 1.01552 1.22543 0.98745 0.87048 0.99864 1.58630 1.02999 1.09620 1.55848 1.22049 1.00264 0.91908 0.92367 1.21469 0.97686 0.94470 1.02341 1.21948 0.94326 0.98104 1.01197 1.21372 0.97871 0.98246 0.98098 1.21474 1.00694 0.91949 1.00347 1.20019 0.89756 0.92847 0.95927 0.92798 1.23601 0.77821 0.80481 0.86664 1.90750 1.59018 1.62325 1.25259 1.84535 1.41196 1.53945 1.53702 0.92793 0.96905 0.96983 0.91550 0.92448 0.95475 0.90209 0.94078 0.88159 0.91562 0.90323 0.92249 0.92198 0.91767 0.92058 0.89524 0.91021 0.73339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.31 27.47 -169.99 -4.67 17.65 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -2.01 4.42 -26.73 -0.12 -2.12 16 11 C 0.04 0.77 4.50 -3.82 -0.02 0.76 16 12 N -0.55 -8.05 3.71 -233.12 -0.86 -8.91 16 13 C 0.06 0.77 5.14 -4.52 -0.02 0.75 16 14 C -0.12 -1.35 5.41 -27.40 -0.15 -1.49 16 15 C -0.12 -1.05 5.91 -25.69 -0.15 -1.20 16 16 C -0.12 -1.02 5.31 -27.24 -0.14 -1.17 16 17 C -0.11 -1.08 4.99 -27.10 -0.14 -1.22 16 18 C 0.13 1.60 1.95 -71.78 -0.14 1.46 16 19 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 20 C 0.47 6.54 6.05 36.01 0.22 6.76 16 21 O -0.49 -8.45 15.87 -18.75 -0.30 -8.75 16 22 O -0.52 -5.57 13.42 -39.25 -0.53 -6.09 16 23 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 24 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 25 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 26 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 27 H 0.06 1.12 6.13 -51.93 -0.32 0.80 16 28 H 0.03 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.08 1.53 5.81 -51.93 -0.30 1.23 16 30 H 0.04 0.48 6.66 -51.93 -0.35 0.14 16 31 H 0.10 1.44 4.95 -51.93 -0.26 1.18 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.98 7.26 -51.93 -0.38 0.60 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.54 6.58 -51.93 -0.34 0.20 16 38 H 0.09 0.97 7.11 -51.93 -0.37 0.61 16 39 H 0.07 0.64 8.01 -51.93 -0.42 0.22 16 40 H 0.41 2.69 9.10 45.56 0.41 3.11 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -33.45 307.11 -7.75 -41.20 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.59 Total: -0.64 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -1.20 Total: -11.46 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.09 Total: -36.53 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.82 Total: -14.84 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.45 -7.75 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080992497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.370 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds