Wall clock time and date at job start Mon Mar 30 2020 06:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00181 * 2 1 4 4 H 1.09001 * 109.46962 * 314.99830 * 3 2 1 5 5 C 1.50697 * 109.47127 * 194.99809 * 3 2 1 6 6 H 1.07999 * 120.00577 * 240.00294 * 5 3 2 7 7 C 1.37886 * 119.99922 * 59.99888 * 5 3 2 8 8 N 1.31512 * 119.99876 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99914 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.46896 * 89.99776 * 9 7 5 11 11 H 1.48495 * 109.46840 * 210.00135 * 9 7 5 12 12 H 1.48495 * 109.46906 * 329.99659 * 9 7 5 13 13 N 1.46496 * 109.46953 * 74.99935 * 3 2 1 14 14 C 1.34777 * 120.00345 * 55.00378 * 13 3 2 15 15 C 1.50700 * 119.99675 * 359.72090 * 14 13 3 16 16 O 1.21283 * 120.00463 * 179.97438 * 14 13 3 17 17 C 1.46497 * 120.00129 * 234.99885 * 13 3 2 18 18 C 1.53003 * 109.47240 * 240.00463 * 17 13 3 19 19 C 1.53003 * 109.47294 * 179.97438 * 18 17 13 20 20 C 1.53001 * 109.47316 * 59.99370 * 19 18 17 21 21 C 1.53003 * 109.47453 * 300.00533 * 20 19 18 22 22 C 1.52993 * 109.47472 * 120.00034 * 17 13 3 23 23 H 1.08998 * 109.46903 * 59.99728 * 1 2 3 24 24 H 1.08995 * 109.47366 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46830 * 300.00450 * 1 2 3 26 26 H 0.96999 * 119.99857 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47260 * 240.27845 * 15 14 13 28 28 H 1.08996 * 109.47571 * 0.27288 * 15 14 13 29 29 H 1.08997 * 109.47392 * 120.28090 * 15 14 13 30 30 H 1.09008 * 109.47102 * 0.02562 * 17 13 3 31 31 H 1.09001 * 109.46873 * 299.99483 * 18 17 13 32 32 H 1.08995 * 109.47357 * 59.99994 * 18 17 13 33 33 H 1.09001 * 109.46759 * 300.00135 * 19 18 17 34 34 H 1.08993 * 109.47355 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.47475 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.47038 * 60.00379 * 20 19 18 37 37 H 1.09001 * 109.46873 * 299.99947 * 21 20 19 38 38 H 1.08995 * 109.47357 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.47191 * 300.00291 * 22 17 13 40 40 H 1.09001 * 109.47143 * 60.00209 * 22 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.4942 1.9329 -0.7267 5 6 3.4683 1.2061 -0.3677 6 1 4.2241 1.5492 0.3233 7 6 3.8375 0.6771 -1.5863 8 7 5.1099 0.5908 -1.9074 9 14 2.5302 0.0841 -2.7817 10 1 2.1273 1.2039 -3.6699 11 1 3.0769 -1.0264 -3.6021 12 1 1.3475 -0.3965 -2.0233 13 7 1.8823 1.8969 1.3341 14 6 2.3576 1.2403 2.4109 15 6 3.0152 -0.1052 2.2431 16 8 2.2521 1.7302 3.5153 17 6 1.2377 3.2022 1.4979 18 6 2.2292 4.1859 2.1228 19 6 1.5562 5.5493 2.2933 20 6 0.3366 5.4056 3.2059 21 6 -0.6549 4.4219 2.5810 22 6 0.0185 3.0580 2.4108 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 5.3696 0.2183 -2.7645 27 1 2.4619 -0.8534 2.8109 28 1 3.0184 -0.3791 1.1881 29 1 4.0407 -0.0567 2.6091 30 1 0.9200 3.5754 0.5242 31 1 2.5465 3.8126 3.0965 32 1 3.0978 4.2887 1.4724 33 1 1.2392 5.9223 1.3194 34 1 2.2624 6.2499 2.7388 35 1 -0.1426 6.3769 3.3277 36 1 0.6535 5.0325 4.1798 37 1 -0.9718 4.7950 1.6071 38 1 -1.5235 4.3192 3.2314 39 1 -0.6879 2.3573 1.9656 40 1 0.3357 2.6848 3.3845 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082292000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:37 Heat of formation + Delta-G solvation = -104.978315 kcal Electronic energy + Delta-G solvation = -20986.702967 eV Core-core repulsion = 17993.673227 eV Total energy + Delta-G solvation = -2993.029741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.42349 -38.76864 -38.46656 -35.26570 -34.53999 -31.75190 -31.62505 -29.78910 -28.75703 -26.98250 -24.32088 -23.52238 -23.46773 -20.90123 -19.91326 -19.22909 -17.84810 -17.77792 -16.91228 -16.31360 -15.85871 -15.59500 -15.36620 -15.14815 -14.92959 -14.78365 -14.65178 -14.21399 -13.63375 -13.49360 -13.09932 -13.03345 -12.84126 -12.82323 -12.73645 -12.35410 -12.24218 -11.94761 -11.76073 -11.60459 -11.56610 -11.17939 -11.08858 -10.77444 -10.47089 -10.30758 -9.57585 -8.34530 -6.49409 1.42658 1.48486 1.67310 1.77966 2.27414 2.41694 2.84781 3.52831 3.70077 3.87602 4.01869 4.07954 4.27259 4.36264 4.39225 4.42471 4.55198 4.59646 4.61679 4.66481 4.70396 4.74305 4.76927 4.87951 4.94129 5.12718 5.13719 5.25160 5.29501 5.32649 5.33461 5.42890 5.46722 5.55758 5.81316 6.11261 6.39083 6.54129 6.81581 7.24468 7.42187 8.78053 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.024149 B = 0.007808 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.180184 B = 3585.020205 C = 3603.902404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.402 6.402 3 C 0.402 3.598 4 H 0.051 0.949 5 C -0.525 4.525 6 H 0.042 0.958 7 C 0.037 3.963 8 N -0.927 5.927 9 Si 0.932 3.068 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.200 1.200 13 N -0.606 5.606 14 C 0.527 3.473 15 C -0.174 4.174 16 O -0.591 6.591 17 C 0.145 3.855 18 C -0.130 4.130 19 C -0.108 4.108 20 C -0.116 4.116 21 C -0.107 4.107 22 C -0.128 4.128 23 H 0.043 0.957 24 H 0.093 0.907 25 H 0.037 0.963 26 H 0.270 0.730 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.411 5.088 3.804 14.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.318 6.318 3 C 0.264 3.736 4 H 0.068 0.932 5 C -0.563 4.563 6 H 0.061 0.939 7 C -0.165 4.165 8 N -0.565 5.565 9 Si 0.755 3.245 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.121 1.121 13 N -0.344 5.344 14 C 0.318 3.682 15 C -0.233 4.233 16 O -0.474 6.474 17 C 0.043 3.957 18 C -0.169 4.169 19 C -0.146 4.146 20 C -0.153 4.153 21 C -0.145 4.145 22 C -0.166 4.166 23 H 0.062 0.938 24 H 0.111 0.889 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.125 0.875 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.253 5.066 4.190 14.793 hybrid contribution 0.392 -0.312 -0.676 0.841 sum -12.861 4.754 3.513 14.154 Atomic orbital electron populations 1.22806 0.82346 1.03036 0.99715 1.88369 1.19438 1.30923 1.93054 1.19960 0.92753 0.80733 0.80160 0.93154 1.21056 0.89879 1.43086 1.02268 0.93931 1.25808 0.97482 0.93441 0.99754 1.70034 1.18185 1.44733 1.23556 0.86133 0.82334 0.78120 0.77932 1.20389 1.22286 1.12137 1.48926 1.57230 1.19923 1.08322 1.20852 0.76433 0.87638 0.83234 1.22072 1.00217 0.93890 1.07091 1.90509 1.59911 1.70567 1.26452 1.21183 0.92794 0.82281 0.99486 1.21846 0.97872 0.96269 1.00904 1.21470 0.97541 0.94861 1.00745 1.21525 0.95619 0.99917 0.98242 1.21479 0.97909 0.93302 1.01844 1.21910 0.95652 0.98907 1.00140 0.93806 0.88894 0.94457 0.92059 0.89156 0.87455 0.91175 0.89398 0.92519 0.94118 0.90848 0.91402 0.89745 0.93317 0.90666 0.90567 0.92157 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.99 113.37 1.13 1.65 16 2 O -0.40 -15.98 5.49 -148.98 -0.82 -16.80 16 3 C 0.40 17.21 1.69 85.63 0.15 17.35 16 4 H 0.05 2.07 6.85 -2.39 -0.02 2.05 16 5 C -0.53 -27.61 7.39 25.60 0.19 -27.42 16 6 H 0.04 2.57 7.91 -2.91 -0.02 2.55 16 7 C 0.04 1.99 5.47 84.66 0.46 2.45 16 8 N -0.93 -54.30 13.96 21.45 0.30 -54.00 16 9 Si 0.93 40.02 26.99 68.60 1.85 41.88 16 10 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.20 -7.62 4.42 99.48 0.44 -7.18 16 13 N -0.61 -24.54 2.21 -895.57 -1.98 -26.52 16 14 C 0.53 22.89 6.81 87.66 0.60 23.49 16 15 C -0.17 -7.20 9.11 71.24 0.65 -6.55 16 16 O -0.59 -27.18 13.31 -3.04 -0.04 -27.22 16 17 C 0.15 4.98 2.56 44.99 0.12 5.09 16 18 C -0.13 -4.53 5.13 30.60 0.16 -4.38 16 19 C -0.11 -2.76 5.92 30.60 0.18 -2.58 16 20 C -0.12 -2.59 5.92 30.60 0.18 -2.41 16 21 C -0.11 -2.38 5.93 30.61 0.18 -2.20 16 22 C -0.13 -3.79 5.13 30.61 0.16 -3.63 16 23 H 0.04 1.21 7.96 -2.39 -0.02 1.19 16 24 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.04 1.09 7.07 -2.38 -0.02 1.08 16 26 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 27 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.11 4.88 4.01 -2.39 -0.01 4.87 16 29 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.09 2.78 7.56 -2.38 -0.02 2.76 16 31 H 0.06 2.27 6.17 -2.39 -0.01 2.26 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.69 7.23 -2.39 -0.02 1.68 16 40 H 0.06 2.09 6.17 -2.39 -0.01 2.07 16 Total: -1.00 -62.97 302.32 4.20 -58.77 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.74 Total: 23.01 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 4.15 Total: 0.88 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -1.68 Total: -80.52 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -0.86 Total: -44.02 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 1.85 Total: 41.88 kcal Total: -62.97 4.20 -58.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082292000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.208 kcal (2) G-P(sol) polarization free energy of solvation -62.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds