Wall clock time and date at job start Mon Mar 30 2020 06:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99786 * 2 1 4 4 H 1.09001 * 109.47176 * 45.32991 * 3 2 1 5 5 C 1.50704 * 109.46947 * 165.32865 * 3 2 1 6 6 H 1.08000 * 119.99534 * 119.99936 * 5 3 2 7 7 C 1.37877 * 120.00372 * 300.00501 * 5 3 2 8 8 N 1.31516 * 119.99834 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00215 * 179.72583 * 7 5 3 10 10 H 1.48496 * 109.47230 * 180.27076 * 9 7 5 11 11 H 1.48498 * 109.46834 * 300.27204 * 9 7 5 12 12 H 1.48500 * 109.47267 * 60.26909 * 9 7 5 13 13 N 1.46498 * 109.47099 * 285.32792 * 3 2 1 14 14 C 1.34777 * 119.99784 * 160.35818 * 13 3 2 15 15 C 1.50703 * 119.99934 * 4.93334 * 14 13 3 16 16 O 1.21283 * 119.99931 * 184.93782 * 14 13 3 17 17 C 1.46499 * 120.00266 * 340.36427 * 13 3 2 18 18 C 1.52999 * 109.46808 * 241.09504 * 17 13 3 19 19 C 1.53000 * 109.47134 * 179.97438 * 18 17 13 20 20 C 1.52997 * 109.47349 * 59.99875 * 19 18 17 21 21 C 1.53008 * 109.47048 * 300.00033 * 20 19 18 22 22 C 1.52997 * 109.47641 * 121.09400 * 17 13 3 23 23 H 1.08997 * 109.46681 * 65.68778 * 1 2 3 24 24 H 1.08996 * 109.46912 * 185.69204 * 1 2 3 25 25 H 1.08995 * 109.46727 * 305.68878 * 1 2 3 26 26 H 0.97001 * 119.99637 * 359.73618 * 8 7 5 27 27 H 1.08997 * 109.46809 * 94.02456 * 15 14 13 28 28 H 1.09009 * 109.46785 * 214.02037 * 15 14 13 29 29 H 1.08996 * 109.47376 * 334.02292 * 15 14 13 30 30 H 1.09005 * 109.47184 * 1.09049 * 17 13 3 31 31 H 1.08997 * 109.47178 * 299.99527 * 18 17 13 32 32 H 1.09004 * 109.47517 * 59.99550 * 18 17 13 33 33 H 1.09005 * 109.47149 * 299.99725 * 19 18 17 34 34 H 1.09000 * 109.47583 * 180.02562 * 19 18 17 35 35 H 1.09004 * 109.47530 * 180.02562 * 20 19 18 36 36 H 1.08997 * 109.47136 * 60.00210 * 20 19 18 37 37 H 1.08997 * 109.47296 * 300.00078 * 21 20 19 38 38 H 1.08993 * 109.47083 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.46913 * 300.00353 * 22 17 13 40 40 H 1.09005 * 109.47117 * 59.99609 * 22 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.4980 1.9313 0.7308 5 6 3.4702 1.2054 0.3599 6 1 4.2223 1.5502 -0.3343 7 6 3.8459 0.6735 1.5752 8 7 2.9300 0.2540 2.4206 9 14 5.6558 0.5424 2.0180 10 1 5.7929 -0.0653 3.3660 11 1 6.3495 -0.3089 1.0184 12 1 6.2640 1.8971 2.0216 13 7 1.8753 1.9002 -1.3321 14 6 1.9775 3.2350 -1.4877 15 6 2.3406 4.1050 -0.3119 16 8 1.7773 3.7360 -2.5739 17 6 1.6291 1.0439 -2.4950 18 6 2.7816 1.1917 -3.4903 19 6 2.5249 0.2970 -4.7045 20 6 1.2146 0.7125 -5.3763 21 6 0.0619 0.5646 -4.3809 22 6 0.3188 1.4600 -3.1665 23 1 -0.3632 0.4231 -0.9365 24 1 -0.3633 -1.0226 0.1019 25 1 -0.3632 0.5995 0.8346 26 1 1.9901 0.3223 2.1907 27 1 3.4179 4.2702 -0.3012 28 1 1.8270 5.0628 -0.3964 29 1 2.0395 3.6115 0.6120 30 1 1.5583 0.0050 -2.1728 31 1 2.8524 2.2306 -3.8125 32 1 3.7152 0.8953 -3.0119 33 1 2.4544 -0.7418 -4.3820 34 1 3.3462 0.4019 -5.4134 35 1 1.0314 0.0748 -6.2411 36 1 1.2851 1.7513 -5.6988 37 1 -0.0086 -0.4741 -4.0584 38 1 -0.8715 0.8610 -4.8593 39 1 -0.5023 1.3547 -2.4574 40 1 0.3896 2.4989 -3.4888 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082292003.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:39 Heat of formation + Delta-G solvation = -117.371364 kcal Electronic energy + Delta-G solvation = -21017.281072 eV Core-core repulsion = 18023.713929 eV Total energy + Delta-G solvation = -2993.567143 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.48005 -38.79733 -38.51248 -35.30724 -34.62575 -31.85464 -31.69518 -29.58816 -28.29967 -26.89838 -24.48902 -23.65090 -23.52460 -21.16030 -19.99812 -19.23649 -18.03321 -17.93748 -16.58793 -16.03055 -15.88385 -15.72097 -15.50314 -15.33269 -15.09713 -14.87915 -14.28240 -14.21056 -13.70795 -13.54468 -13.36722 -13.14444 -12.92960 -12.78396 -12.65633 -12.30635 -12.19091 -12.01068 -11.92915 -11.63795 -11.39100 -11.18778 -10.96832 -10.82746 -10.56065 -10.43973 -9.46290 -8.63921 -6.49842 1.56482 1.62081 1.68965 1.82402 2.23890 2.54949 2.91106 3.51765 3.64084 3.83243 3.93281 4.02309 4.27681 4.30284 4.35446 4.36712 4.46652 4.50369 4.53078 4.57705 4.60777 4.64897 4.70112 4.75013 4.85936 5.06071 5.07269 5.10164 5.20176 5.25793 5.28913 5.37438 5.45068 5.57055 5.82220 6.05494 6.46569 6.50114 6.77757 7.28051 7.40980 8.71542 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.007780 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.871499 B = 3598.325992 C = 3662.096335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.400 6.400 3 C 0.417 3.583 4 H 0.019 0.981 5 C -0.612 4.612 6 H 0.052 0.948 7 C -0.003 4.003 8 N -0.906 5.906 9 Si 1.111 2.889 10 H -0.282 1.282 11 H -0.279 1.279 12 H -0.266 1.266 13 N -0.608 5.608 14 C 0.511 3.489 15 C -0.161 4.161 16 O -0.586 6.586 17 C 0.149 3.851 18 C -0.124 4.124 19 C -0.109 4.109 20 C -0.113 4.113 21 C -0.109 4.109 22 C -0.130 4.130 23 H 0.045 0.955 24 H 0.090 0.910 25 H 0.030 0.970 26 H 0.267 0.733 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.906 0.835 -8.954 9.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.315 6.315 3 C 0.279 3.721 4 H 0.036 0.964 5 C -0.649 4.649 6 H 0.070 0.930 7 C -0.207 4.207 8 N -0.541 5.541 9 Si 0.933 3.067 10 H -0.207 1.207 11 H -0.205 1.205 12 H -0.190 1.190 13 N -0.346 5.346 14 C 0.301 3.699 15 C -0.220 4.220 16 O -0.469 6.469 17 C 0.046 3.954 18 C -0.163 4.163 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.168 4.168 23 H 0.064 0.936 24 H 0.109 0.891 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.908 0.369 -8.260 8.765 hybrid contribution -1.261 0.613 -0.752 1.591 sum -4.169 0.982 -9.012 9.978 Atomic orbital electron populations 1.22917 0.82748 1.02658 0.99693 1.88324 1.19070 1.31169 1.92982 1.19929 0.93170 0.79734 0.79239 0.96364 1.22259 0.90727 1.47397 1.04535 0.93010 1.27107 1.09608 0.91284 0.92692 1.70824 1.02802 1.42329 1.38151 0.83001 0.69764 0.77803 0.76150 1.20717 1.20487 1.19049 1.49050 1.69170 1.06608 1.09728 1.20953 0.75697 0.82616 0.90590 1.21867 1.04405 0.99579 0.96171 1.90525 1.53070 1.74319 1.28993 1.20914 0.95139 0.94615 0.84755 1.21782 0.97120 1.00752 0.96615 1.21467 0.98585 0.98805 0.95835 1.21509 0.93817 1.01537 0.98159 1.21484 0.99000 0.99354 0.94848 1.21992 0.95427 1.01519 0.97862 0.93619 0.89145 0.95090 0.92229 0.88596 0.88222 0.90749 0.90394 0.92427 0.94332 0.91775 0.90857 0.89630 0.92716 0.91575 0.90354 0.92975 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 10.46 113.37 1.19 1.79 16 2 O -0.40 -18.98 7.67 -148.98 -1.14 -20.12 16 3 C 0.42 19.87 1.45 85.63 0.12 19.99 16 4 H 0.02 0.95 6.12 -2.39 -0.01 0.94 16 5 C -0.61 -32.06 8.39 25.60 0.21 -31.84 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 7 C 0.00 -0.14 5.40 84.65 0.46 0.31 16 8 N -0.91 -51.29 13.53 21.45 0.29 -51.00 16 9 Si 1.11 47.36 29.90 68.60 2.05 49.41 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 12 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 13 N -0.61 -26.14 2.34 -895.53 -2.09 -28.23 16 14 C 0.51 21.53 7.10 87.66 0.62 22.15 16 15 C -0.16 -5.86 9.44 71.24 0.67 -5.19 16 16 O -0.59 -25.99 13.34 -3.04 -0.04 -26.03 16 17 C 0.15 5.76 1.58 44.99 0.07 5.83 16 18 C -0.12 -4.60 5.15 30.59 0.16 -4.44 16 19 C -0.11 -3.07 5.92 30.59 0.18 -2.89 16 20 C -0.11 -2.77 5.92 30.60 0.18 -2.59 16 21 C -0.11 -2.80 5.93 30.61 0.18 -2.62 16 22 C -0.13 -4.34 4.93 30.61 0.15 -4.19 16 23 H 0.05 1.58 4.99 -2.39 -0.01 1.57 16 24 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 25 H 0.03 1.13 8.01 -2.39 -0.02 1.11 16 26 H 0.27 15.20 6.48 -92.71 -0.60 14.60 16 27 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 28 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 29 H 0.07 2.86 5.85 -2.39 -0.01 2.84 16 30 H 0.08 3.22 6.35 -2.38 -0.02 3.20 16 31 H 0.06 2.32 6.42 -2.39 -0.02 2.30 16 32 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.06 1.75 8.14 -2.38 -0.02 1.74 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.72 6.14 -2.39 -0.01 1.71 16 40 H 0.07 2.56 5.93 -2.38 -0.01 2.55 16 Total: -1.00 -61.60 305.27 4.45 -57.15 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 1.18 Total: 22.53 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 4.20 Total: -3.71 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -1.80 Total: -79.24 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -1.18 Total: -46.15 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.05 Total: 49.41 kcal Total: -61.60 4.45 -57.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082292003.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.221 kcal (2) G-P(sol) polarization free energy of solvation -61.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds