Wall clock time and date at job start Mon Mar 30 2020 06:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34641 * 117.00008 * 2 1 4 4 O 1.21507 * 120.00096 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99582 * 179.97438 * 3 2 1 6 6 C 1.46926 * 120.63317 * 354.49889 * 5 3 2 7 7 H 1.08992 * 109.70282 * 6.55738 * 6 5 3 8 8 C 1.52996 * 109.58494 * 246.19638 * 6 5 3 9 9 C 1.53197 * 108.77194 * 126.41230 * 6 5 3 10 10 C 1.53030 * 109.34223 * 54.61978 * 9 6 5 11 11 C 1.53043 * 109.53899 * 298.68271 * 10 9 6 12 12 C 1.46931 * 120.62732 * 174.51669 * 5 3 2 13 13 H 1.08999 * 109.58484 * 113.65914 * 12 5 3 14 14 C 1.53001 * 109.58652 * 353.37835 * 12 5 3 15 15 C 1.52998 * 109.46972 * 181.73855 * 14 12 5 16 16 C 1.50700 * 109.47007 * 185.07587 * 15 14 12 17 17 H 1.08004 * 120.00214 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00106 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99945 * 179.97438 * 18 16 15 20 20 Si 1.86791 * 119.99859 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47120 * 90.00002 * 20 18 16 22 22 H 1.48503 * 109.47311 * 209.99702 * 20 18 16 23 23 H 1.48497 * 109.47213 * 329.99801 * 20 18 16 24 24 H 1.08998 * 109.46774 * 60.00528 * 1 2 3 25 25 H 1.09000 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46833 * 300.00670 * 1 2 3 27 27 H 1.09004 * 109.47147 * 300.71175 * 8 6 5 28 28 H 1.09004 * 109.47281 * 60.71086 * 8 6 5 29 29 H 1.08999 * 109.47370 * 180.71023 * 8 6 5 30 30 H 1.09004 * 109.49457 * 174.58682 * 9 6 5 31 31 H 1.09002 * 109.49887 * 294.64833 * 9 6 5 32 32 H 1.09006 * 109.46586 * 58.67103 * 10 9 6 33 33 H 1.09005 * 109.46577 * 178.62655 * 10 9 6 34 34 H 1.09000 * 109.46689 * 301.36404 * 11 10 9 35 35 H 1.08997 * 109.49945 * 181.28981 * 11 10 9 36 36 H 1.09003 * 109.47072 * 301.73666 * 14 12 5 37 37 H 1.09002 * 109.47235 * 61.73528 * 14 12 5 38 38 H 1.09000 * 109.46913 * 305.07176 * 15 14 12 39 39 H 1.08994 * 109.47492 * 65.07325 * 15 14 12 40 40 H 0.96996 * 119.99921 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2226 0.0526 0.1223 7 1 3.5777 -0.8253 0.0857 8 6 4.9838 0.0749 1.4492 9 6 5.2188 0.0069 -1.0406 10 6 6.0296 1.3045 -1.0647 11 6 5.0887 2.4921 -1.2804 12 6 4.0910 2.5660 -0.1203 13 1 4.6205 2.7881 0.8062 14 6 3.0616 3.6632 -0.3983 15 6 3.7785 5.0044 -0.5666 16 6 2.7587 6.1038 -0.7160 17 1 1.7046 5.8694 -0.6937 18 6 3.1713 7.4090 -0.8813 19 7 2.2813 8.3684 -1.0123 20 14 4.9942 7.8144 -0.9207 21 1 5.4872 7.7428 -2.3197 22 1 5.2082 9.1847 -0.3900 23 1 5.7366 6.8379 -0.0837 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 5.6243 0.9562 1.4859 28 1 4.2733 0.1075 2.2753 29 1 5.5962 -0.8230 1.5320 30 1 5.8920 -0.8404 -0.9098 31 1 4.6767 -0.1009 -1.9801 32 1 6.5525 1.4238 -0.1157 33 1 6.7559 1.2640 -1.8765 34 1 4.5478 2.3614 -2.2176 35 1 5.6692 3.4137 -1.3203 36 1 2.5154 3.4261 -1.3113 37 1 2.3636 3.7266 0.4366 38 1 4.3962 5.1986 0.3102 39 1 4.4090 4.9704 -1.4550 40 1 2.5715 9.2865 -1.1290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082292010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:50 Heat of formation + Delta-G solvation = -80.137620 kcal Electronic energy + Delta-G solvation = -20300.391312 eV Core-core repulsion = 17308.438745 eV Total energy + Delta-G solvation = -2991.952567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.71802 -38.50635 -36.24206 -34.27315 -32.82687 -32.30828 -30.21281 -28.10553 -27.06890 -25.48878 -23.44646 -22.58302 -21.14910 -20.02279 -19.23686 -17.34892 -16.72336 -16.44007 -16.18095 -15.05871 -14.85464 -14.31491 -14.20550 -13.91991 -13.74061 -13.24695 -12.84497 -12.69766 -12.61426 -12.34611 -12.17474 -11.81306 -11.74567 -11.37197 -11.23013 -10.96958 -10.80823 -10.73814 -10.54257 -10.32906 -10.10493 -9.60848 -9.45561 -9.19314 -8.66874 -8.44271 -8.35528 -5.92430 -3.88591 2.37474 3.12882 3.36101 3.43024 3.46463 4.01334 4.53993 4.67522 4.83932 4.93907 5.10622 5.22216 5.26416 5.32398 5.37947 5.40839 5.49724 5.54441 5.60606 5.64560 5.80641 5.87139 5.91311 5.99076 6.09185 6.21020 6.25154 6.43303 6.47309 6.58712 6.79415 6.97070 7.06886 7.56898 7.59208 7.77407 7.92729 8.61764 8.72632 9.16997 9.70289 11.21611 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.021964 B = 0.006695 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.505209 B = 4181.219893 C = 5164.649717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.383 6.383 3 C 0.640 3.360 4 O -0.544 6.544 5 N -0.586 5.586 6 C 0.137 3.863 7 H 0.094 0.906 8 C -0.164 4.164 9 C -0.128 4.128 10 C -0.123 4.123 11 C -0.132 4.132 12 C 0.158 3.842 13 H 0.072 0.928 14 C -0.095 4.095 15 C -0.017 4.017 16 C -0.510 4.510 17 H 0.073 0.927 18 C 0.063 3.937 19 N -0.907 5.907 20 Si 0.879 3.121 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.012 0.988 39 H 0.009 0.991 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.682 -21.078 2.197 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.298 6.298 3 C 0.394 3.606 4 O -0.431 6.431 5 N -0.327 5.327 6 C 0.034 3.966 7 H 0.113 0.887 8 C -0.222 4.222 9 C -0.166 4.166 10 C -0.160 4.160 11 C -0.170 4.170 12 C 0.057 3.943 13 H 0.090 0.910 14 C -0.132 4.132 15 C -0.055 4.055 16 C -0.548 4.548 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.547 5.547 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.081 0.919 25 H 0.114 0.886 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.030 0.970 39 H 0.027 0.973 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.374 -20.589 2.175 21.390 hybrid contribution 0.798 0.379 -0.106 0.890 sum 6.172 -20.210 2.069 21.232 Atomic orbital electron populations 1.23093 0.75117 1.02736 1.02808 1.86197 1.23647 1.32388 1.87525 1.18306 0.83404 0.81886 0.77004 1.91168 1.64722 1.32943 1.54274 1.47200 1.01437 1.08774 1.75287 1.21235 0.92871 0.87408 0.95094 0.88744 1.22175 1.00676 1.02526 0.96799 1.21926 0.97920 0.98332 0.98454 1.21603 0.97876 0.94530 1.02014 1.22060 0.97364 0.98670 0.98939 1.21563 0.93948 0.80932 0.97810 0.91012 1.22045 0.95663 0.91987 1.03552 1.19734 0.96505 0.93584 0.95684 1.21175 0.94579 0.90435 1.48594 0.90933 1.25049 0.97284 0.96419 0.94984 1.69930 1.33415 1.00331 1.51018 0.86796 0.86542 0.77507 0.78534 1.20428 1.21534 1.19042 0.91942 0.88593 0.92018 0.91673 0.92352 0.91557 0.91002 0.91531 0.91617 0.91851 0.91425 0.89834 0.92285 0.89435 0.97009 0.97250 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 10.56 101.05 1.07 1.71 16 2 O -0.38 -5.48 9.21 -40.33 -0.37 -5.85 16 3 C 0.64 11.11 8.26 54.05 0.45 11.55 16 4 O -0.54 -11.53 11.68 -19.28 -0.23 -11.75 16 5 N -0.59 -9.04 2.68 -163.44 -0.44 -9.48 16 6 C 0.14 1.58 3.23 -67.60 -0.22 1.36 16 7 H 0.09 1.03 6.93 -51.93 -0.36 0.67 16 8 C -0.16 -1.63 9.02 37.16 0.34 -1.29 16 9 C -0.13 -1.30 5.55 -26.61 -0.15 -1.45 16 10 C -0.12 -1.38 5.68 -26.69 -0.15 -1.53 16 11 C -0.13 -1.97 4.82 -26.61 -0.13 -2.10 16 12 C 0.16 2.70 2.61 -67.60 -0.18 2.53 16 13 H 0.07 1.19 7.49 -51.93 -0.39 0.80 16 14 C -0.09 -2.10 3.11 -26.73 -0.08 -2.19 16 15 C -0.02 -0.43 3.51 -27.88 -0.10 -0.53 16 16 C -0.51 -15.42 9.66 -34.44 -0.33 -15.75 16 17 H 0.07 2.41 7.99 -52.48 -0.42 2.00 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.91 -29.16 13.96 55.43 0.77 -28.39 16 20 Si 0.88 22.34 27.47 -169.99 -4.67 17.67 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 23 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.68 5.73 -51.93 -0.30 0.39 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.69 6.51 -51.93 -0.34 0.35 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.31 6.86 -51.93 -0.36 0.95 16 36 H 0.06 1.40 7.24 -51.93 -0.38 1.03 16 37 H 0.09 2.15 6.23 -51.93 -0.32 1.83 16 38 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 39 H 0.01 0.22 6.27 -51.93 -0.33 -0.10 16 40 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -34.26 307.26 -6.41 -40.67 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.53 Total: -1.64 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 0.42 Total: -5.87 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.34 Total: -37.87 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.60 Total: -17.60 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.26 -6.41 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082292010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.465 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds