Wall clock time and date at job start Mon Mar 30 2020 06:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34641 * 117.00008 * 2 1 4 4 O 1.21507 * 120.00096 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99582 * 179.97438 * 3 2 1 6 6 C 1.46926 * 120.63317 * 354.49889 * 5 3 2 7 7 H 1.08992 * 109.70282 * 6.55738 * 6 5 3 8 8 C 1.52996 * 109.58494 * 246.19638 * 6 5 3 9 9 C 1.53197 * 108.77194 * 126.41230 * 6 5 3 10 10 C 1.53030 * 109.34223 * 54.61978 * 9 6 5 11 11 C 1.53043 * 109.53899 * 298.68271 * 10 9 6 12 12 C 1.46931 * 120.62732 * 174.51669 * 5 3 2 13 13 H 1.08999 * 109.58484 * 113.65914 * 12 5 3 14 14 C 1.53001 * 109.58652 * 353.37835 * 12 5 3 15 15 C 1.52998 * 109.46972 * 181.73855 * 14 12 5 16 16 C 1.50700 * 109.47007 * 185.07587 * 15 14 12 17 17 H 1.08004 * 120.00214 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00106 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99945 * 179.97438 * 18 16 15 20 20 Si 1.86791 * 119.99859 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47120 * 90.00002 * 20 18 16 22 22 H 1.48503 * 109.47311 * 209.99702 * 20 18 16 23 23 H 1.48497 * 109.47213 * 329.99801 * 20 18 16 24 24 H 1.08998 * 109.46774 * 60.00528 * 1 2 3 25 25 H 1.09000 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46833 * 300.00670 * 1 2 3 27 27 H 1.09004 * 109.47147 * 300.71175 * 8 6 5 28 28 H 1.09004 * 109.47281 * 60.71086 * 8 6 5 29 29 H 1.08999 * 109.47370 * 180.71023 * 8 6 5 30 30 H 1.09004 * 109.49457 * 174.58682 * 9 6 5 31 31 H 1.09002 * 109.49887 * 294.64833 * 9 6 5 32 32 H 1.09006 * 109.46586 * 58.67103 * 10 9 6 33 33 H 1.09005 * 109.46577 * 178.62655 * 10 9 6 34 34 H 1.09000 * 109.46689 * 301.36404 * 11 10 9 35 35 H 1.08997 * 109.49945 * 181.28981 * 11 10 9 36 36 H 1.09003 * 109.47072 * 301.73666 * 14 12 5 37 37 H 1.09002 * 109.47235 * 61.73528 * 14 12 5 38 38 H 1.09000 * 109.46913 * 305.07176 * 15 14 12 39 39 H 1.08994 * 109.47492 * 65.07325 * 15 14 12 40 40 H 0.96996 * 119.99921 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2226 0.0526 0.1223 7 1 3.5777 -0.8253 0.0857 8 6 4.9838 0.0749 1.4492 9 6 5.2188 0.0069 -1.0406 10 6 6.0296 1.3045 -1.0647 11 6 5.0887 2.4921 -1.2804 12 6 4.0910 2.5660 -0.1203 13 1 4.6205 2.7881 0.8062 14 6 3.0616 3.6632 -0.3983 15 6 3.7785 5.0044 -0.5666 16 6 2.7587 6.1038 -0.7160 17 1 1.7046 5.8694 -0.6937 18 6 3.1713 7.4090 -0.8813 19 7 2.2813 8.3684 -1.0123 20 14 4.9942 7.8144 -0.9207 21 1 5.4872 7.7428 -2.3197 22 1 5.2082 9.1847 -0.3900 23 1 5.7366 6.8379 -0.0837 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 5.6243 0.9562 1.4859 28 1 4.2733 0.1075 2.2753 29 1 5.5962 -0.8230 1.5320 30 1 5.8920 -0.8404 -0.9098 31 1 4.6767 -0.1009 -1.9801 32 1 6.5525 1.4238 -0.1157 33 1 6.7559 1.2640 -1.8765 34 1 4.5478 2.3614 -2.2176 35 1 5.6692 3.4137 -1.3203 36 1 2.5154 3.4261 -1.3113 37 1 2.3636 3.7266 0.4366 38 1 4.3962 5.1986 0.3102 39 1 4.4090 4.9704 -1.4550 40 1 2.5715 9.2865 -1.1290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082292010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:49 Heat of formation + Delta-G solvation = -103.167961 kcal Electronic energy + Delta-G solvation = -20301.389983 eV Core-core repulsion = 17308.438745 eV Total energy + Delta-G solvation = -2992.951238 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.99263 -39.66200 -37.54547 -36.02030 -34.29812 -33.93046 -31.77496 -29.36547 -28.09158 -27.03966 -24.70708 -24.00476 -22.42556 -21.74871 -20.39111 -19.05882 -18.30360 -17.88982 -17.44400 -16.46563 -16.03108 -15.83468 -15.42942 -15.26850 -14.88555 -14.76324 -14.36130 -14.16895 -13.85321 -13.78631 -13.46172 -13.03478 -12.82404 -12.76265 -12.69455 -12.38474 -12.18370 -11.86542 -11.81641 -11.68828 -11.47854 -11.39385 -11.29025 -11.20942 -10.76101 -10.34882 -9.64239 -8.28336 -6.33180 1.17887 1.34991 1.39217 1.51524 1.77866 2.37718 2.92885 3.06023 3.76598 3.87634 3.93367 4.06283 4.20685 4.34388 4.34713 4.38836 4.42343 4.56397 4.62851 4.68724 4.69883 4.86774 4.94051 4.98064 5.05770 5.08253 5.09506 5.16562 5.24342 5.29284 5.31638 5.50125 5.55010 5.64791 5.70010 5.79539 6.31591 6.42727 6.75022 7.29688 7.32238 8.89833 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.021964 B = 0.006695 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.505209 B = 4181.219893 C = 5164.649717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.373 6.373 3 C 0.632 3.368 4 O -0.596 6.596 5 N -0.583 5.583 6 C 0.130 3.870 7 H 0.102 0.898 8 C -0.159 4.159 9 C -0.123 4.123 10 C -0.116 4.116 11 C -0.131 4.131 12 C 0.164 3.836 13 H 0.083 0.917 14 C -0.078 4.078 15 C -0.009 4.009 16 C -0.533 4.533 17 H 0.014 0.986 18 C -0.003 4.003 19 N -0.958 5.958 20 Si 0.960 3.040 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.238 1.238 24 H 0.050 0.950 25 H 0.142 0.858 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.029 0.971 37 H 0.053 0.947 38 H 0.023 0.977 39 H 0.026 0.974 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.491 -23.510 2.405 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.287 6.287 3 C 0.387 3.613 4 O -0.487 6.487 5 N -0.324 5.324 6 C 0.029 3.971 7 H 0.120 0.880 8 C -0.217 4.217 9 C -0.161 4.161 10 C -0.153 4.153 11 C -0.169 4.169 12 C 0.063 3.937 13 H 0.101 0.899 14 C -0.116 4.116 15 C -0.047 4.047 16 C -0.571 4.571 17 H 0.032 0.968 18 C -0.199 4.199 19 N -0.599 5.599 20 Si 0.782 3.218 21 H -0.187 1.187 22 H -0.209 1.209 23 H -0.161 1.161 24 H 0.069 0.931 25 H 0.160 0.840 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.191 -23.090 2.387 24.966 hybrid contribution -0.591 1.096 -0.166 1.256 sum 8.600 -21.994 2.220 23.720 Atomic orbital electron populations 1.23412 0.73516 1.05418 1.01947 1.86204 1.25138 1.30336 1.87044 1.18605 0.84078 0.82037 0.76557 1.91154 1.66010 1.34883 1.56664 1.47311 1.01093 1.09655 1.74297 1.21616 0.93044 0.85552 0.96912 0.87951 1.22164 1.00458 1.03977 0.95124 1.21935 0.97811 0.99156 0.97207 1.21591 0.97299 0.92869 1.03579 1.22037 0.97240 1.00697 0.96935 1.21338 0.92707 0.80196 0.99455 0.89870 1.21693 0.96041 0.93077 1.00813 1.19637 0.95398 0.93042 0.96581 1.21492 0.93252 0.92926 1.49452 0.96802 1.26191 1.03983 0.95766 0.93916 1.70113 1.36688 1.01070 1.51993 0.85520 0.78540 0.77936 0.79824 1.18712 1.20878 1.16071 0.93104 0.83980 0.92741 0.91946 0.93481 0.88355 0.87396 0.92421 0.90136 0.89904 0.92891 0.90224 0.95188 0.92823 0.95841 0.95578 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.15 10.56 113.37 1.20 2.34 16 2 O -0.37 -10.54 9.21 -55.51 -0.51 -11.05 16 3 C 0.63 22.55 8.26 129.79 1.07 23.62 16 4 O -0.60 -27.14 11.68 19.82 0.23 -26.91 16 5 N -0.58 -17.61 2.68 -901.41 -2.42 -20.02 16 6 C 0.13 2.61 3.23 44.97 0.15 2.76 16 7 H 0.10 1.92 6.93 -2.39 -0.02 1.90 16 8 C -0.16 -2.58 9.02 71.98 0.65 -1.93 16 9 C -0.12 -2.00 5.55 30.67 0.17 -1.83 16 10 C -0.12 -2.12 5.68 30.62 0.17 -1.95 16 11 C -0.13 -3.64 4.82 30.67 0.15 -3.50 16 12 C 0.16 5.53 2.61 44.97 0.12 5.65 16 13 H 0.08 2.63 7.49 -2.39 -0.02 2.61 16 14 C -0.08 -3.64 3.11 30.59 0.10 -3.55 16 15 C -0.01 -0.44 3.51 29.85 0.10 -0.34 16 16 C -0.53 -33.92 9.66 25.60 0.25 -33.67 16 17 H 0.01 0.99 7.99 -2.91 -0.02 0.97 16 18 C 0.00 -0.19 5.47 84.65 0.46 0.28 16 19 N -0.96 -63.87 13.96 21.45 0.30 -63.57 16 20 Si 0.96 45.70 27.47 68.60 1.88 47.59 16 21 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.06 1.06 5.73 -2.38 -0.01 1.05 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.29 6.51 -2.38 -0.02 1.27 16 33 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 2.28 6.86 -2.39 -0.02 2.26 16 36 H 0.03 1.52 7.24 -2.39 -0.02 1.50 16 37 H 0.05 2.84 6.23 -2.39 -0.01 2.82 16 38 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 39 H 0.03 1.23 6.27 -2.39 -0.01 1.22 16 40 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 Total: -1.00 -80.77 307.26 5.02 -75.74 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.95 Total: 10.34 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 4.58 Total: -12.12 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -2.12 Total: -83.59 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.28 Total: -37.96 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.88 Total: 47.59 kcal Total: -80.77 5.02 -75.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082292010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.427 kcal (2) G-P(sol) polarization free energy of solvation -80.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds