Wall clock time and date at job start Mon Mar 30 2020 06:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34634 * 117.00462 * 2 1 4 4 O 1.21512 * 119.99811 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00534 * 179.97438 * 3 2 1 6 6 C 1.46924 * 120.63336 * 185.88215 * 5 3 2 7 7 H 1.09002 * 109.58708 * 113.84638 * 6 5 3 8 8 C 1.53002 * 109.70457 * 353.48609 * 6 5 3 9 9 C 1.52995 * 109.47067 * 179.90617 * 8 6 5 10 10 C 1.50702 * 109.47299 * 185.18712 * 9 8 6 11 11 H 1.08005 * 119.99274 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00215 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99955 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99910 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46851 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46759 * 120.00044 * 14 12 10 17 17 H 1.48497 * 109.47066 * 239.99683 * 14 12 10 18 18 C 1.53194 * 108.77638 * 233.63193 * 6 5 3 19 19 C 1.53040 * 109.31171 * 305.36456 * 18 6 5 20 20 C 1.53045 * 109.53628 * 61.36678 * 19 18 6 21 21 C 1.46934 * 120.62867 * 5.90951 * 5 3 2 22 22 H 1.08994 * 109.70131 * 246.22568 * 21 5 3 23 23 C 1.53002 * 109.58524 * 6.57922 * 21 5 3 24 24 H 1.09004 * 109.47215 * 59.99526 * 1 2 3 25 25 H 1.09002 * 109.47570 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46909 * 300.00036 * 1 2 3 27 27 H 1.08994 * 109.47418 * 299.91405 * 8 6 5 28 28 H 1.09004 * 109.46214 * 59.91234 * 8 6 5 29 29 H 1.09001 * 109.47823 * 305.19025 * 9 8 6 30 30 H 1.08999 * 109.47059 * 65.18781 * 9 8 6 31 31 H 0.97006 * 119.99647 * 179.97438 * 13 12 10 32 32 H 1.09005 * 109.49556 * 65.31745 * 18 6 5 33 33 H 1.08999 * 109.50102 * 185.41175 * 18 6 5 34 34 H 1.09009 * 109.45796 * 181.38352 * 19 18 6 35 35 H 1.08995 * 109.46684 * 301.34179 * 19 18 6 36 36 H 1.08997 * 109.50009 * 58.58862 * 20 19 18 37 37 H 1.09001 * 109.49251 * 178.68121 * 20 19 18 38 38 H 1.09002 * 109.47057 * 171.55569 * 23 21 5 39 39 H 1.09004 * 109.47087 * 291.55041 * 23 21 5 40 40 H 1.09000 * 109.47567 * 51.54958 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0909 2.5651 0.1301 7 1 4.6329 2.5998 1.0752 8 6 3.0617 3.6965 0.0871 9 6 3.7769 5.0420 0.2248 10 6 2.7559 6.1471 0.3105 11 1 1.7023 5.9130 0.2712 12 6 3.1669 7.4569 0.4391 13 7 4.4499 7.7418 0.4875 14 14 1.9013 8.8268 0.5447 15 1 0.5364 8.2467 0.4681 16 1 2.0601 9.5492 1.8324 17 1 2.1013 9.7734 -0.5819 18 6 5.0757 2.7225 -1.0327 19 6 6.0177 1.5167 -1.0648 20 6 5.2059 0.2389 -1.2890 21 6 4.2226 0.0534 -0.1291 22 1 4.7752 -0.1193 0.7944 23 6 3.3132 -1.1436 -0.4140 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.5264 3.6649 -0.8618 28 1 2.3544 3.5754 0.9076 29 1 4.3859 5.0391 1.1288 30 1 4.4159 5.2042 -0.6432 31 1 4.7390 8.6633 0.5776 32 1 4.5244 2.7786 -1.9714 33 1 5.6568 3.6345 -0.8966 34 1 6.7353 1.6381 -1.8764 35 1 6.5506 1.4468 -0.1166 36 1 4.6534 0.3183 -2.2252 37 1 5.8796 -0.6167 -1.3351 38 1 3.9232 -2.0135 -0.6577 39 1 2.7091 -1.3589 0.4674 40 1 2.6594 -0.9113 -1.2546 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082292012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:51 Heat of formation + Delta-G solvation = -72.193813 kcal Electronic energy + Delta-G solvation = -20293.948882 eV Core-core repulsion = 17302.340785 eV Total energy + Delta-G solvation = -2991.608098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.75032 -38.19755 -36.35125 -34.19038 -32.89344 -32.31585 -29.97423 -27.59724 -27.00822 -25.18885 -23.57467 -22.28091 -21.20941 -19.81748 -19.67584 -17.42778 -16.64286 -16.32968 -15.87816 -14.94494 -14.62305 -14.37339 -14.29319 -13.96804 -13.63297 -13.24978 -12.68612 -12.47609 -12.39830 -12.15399 -12.02125 -11.69266 -11.31580 -11.23066 -10.99848 -10.81321 -10.70374 -10.64400 -10.45018 -10.30896 -10.28587 -9.58105 -9.47735 -8.94631 -8.55034 -8.30074 -8.16640 -5.89174 -3.88745 2.49660 3.20156 3.38596 3.45503 3.52370 4.11183 4.57047 4.78434 4.86491 5.02508 5.23277 5.27225 5.36966 5.38984 5.41427 5.47070 5.56082 5.65021 5.68546 5.77281 5.92853 5.98927 6.09123 6.12468 6.23385 6.31534 6.40116 6.53176 6.59782 6.73586 6.98575 7.19492 7.39048 7.78558 7.88121 7.98008 8.14360 8.59011 8.71825 9.19152 9.74395 11.22605 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.024685 B = 0.006019 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.034198 B = 4650.654658 C = 5655.500783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.362 6.362 3 C 0.634 3.366 4 O -0.547 6.547 5 N -0.589 5.589 6 C 0.159 3.841 7 H 0.071 0.929 8 C -0.097 4.097 9 C 0.016 3.984 10 C -0.508 4.508 11 H 0.056 0.944 12 C 0.054 3.946 13 N -0.900 5.900 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.130 4.130 19 C -0.122 4.122 20 C -0.128 4.128 21 C 0.138 3.862 22 H 0.072 0.928 23 C -0.152 4.152 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.011 0.989 30 H 0.016 0.984 31 H 0.258 0.742 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.151 -19.743 -2.380 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.389 3.611 4 O -0.434 6.434 5 N -0.331 5.331 6 C 0.059 3.941 7 H 0.089 0.911 8 C -0.135 4.135 9 C -0.021 4.021 10 C -0.547 4.547 11 H 0.074 0.926 12 C -0.146 4.146 13 N -0.540 5.540 14 Si 0.717 3.283 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.168 4.168 19 C -0.159 4.159 20 C -0.167 4.167 21 C 0.035 3.965 22 H 0.090 0.910 23 C -0.209 4.209 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.024 -19.303 -2.360 19.447 hybrid contribution -0.707 0.889 0.065 1.138 sum -0.731 -18.414 -2.295 18.571 Atomic orbital electron populations 1.23119 0.77531 1.02472 1.02544 1.87064 1.22264 1.30905 1.87465 1.18500 0.83332 0.82159 0.77115 1.91168 1.64812 1.33252 1.54199 1.47452 1.01477 1.08880 1.75264 1.21601 0.94033 0.80799 0.97692 0.91148 1.22141 0.95480 0.92663 1.03167 1.19277 0.95668 0.90445 0.96723 1.21321 0.93376 0.91332 1.48637 0.92579 1.25010 0.95123 0.98790 0.95694 1.69979 1.13830 1.18697 1.51508 0.86571 0.82047 0.82190 0.77444 1.19743 1.21139 1.21131 1.22039 0.97359 0.98480 0.98945 1.21580 0.97890 0.94603 1.01874 1.21984 0.97810 0.98406 0.98470 1.21272 0.92276 0.84537 0.98432 0.90953 1.22251 0.98356 0.96122 1.04140 0.92275 0.88868 0.92268 0.92119 0.91066 0.97029 0.96576 0.93290 0.91676 0.89347 0.91828 0.91886 0.91582 0.91112 0.91984 0.90349 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.36 -4.99 5.18 -40.31 -0.21 -5.20 16 3 C 0.63 11.10 8.09 54.05 0.44 11.53 16 4 O -0.55 -11.71 11.55 -19.28 -0.22 -11.93 16 5 N -0.59 -9.45 2.97 -163.44 -0.49 -9.94 16 6 C 0.16 2.89 3.00 -67.60 -0.20 2.69 16 7 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 8 C -0.10 -2.23 3.08 -26.73 -0.08 -2.31 16 9 C 0.02 0.44 4.49 -27.88 -0.13 0.32 16 10 C -0.51 -15.27 9.11 -34.44 -0.31 -15.58 16 11 H 0.06 1.70 7.74 -52.48 -0.41 1.29 16 12 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 14 Si 0.89 22.69 29.54 -169.99 -5.02 17.67 16 15 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 18 C -0.13 -2.10 4.87 -26.61 -0.13 -2.23 16 19 C -0.12 -1.50 5.88 -26.69 -0.16 -1.65 16 20 C -0.13 -1.40 5.37 -26.61 -0.14 -1.54 16 21 C 0.14 1.66 3.49 -67.60 -0.24 1.42 16 22 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 23 C -0.15 -1.55 7.55 37.16 0.28 -1.27 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.49 7.03 -51.93 -0.36 1.13 16 28 H 0.07 1.78 6.47 -51.93 -0.34 1.45 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.55 6.89 -51.93 -0.36 1.20 16 34 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 39 H 0.08 0.83 6.56 -51.93 -0.34 0.49 16 40 H 0.07 0.81 6.68 -51.93 -0.35 0.47 16 LS Contribution 309.04 15.07 4.66 4.66 Total: -1.00 -33.33 309.04 -6.96 -40.29 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.72 Total: -2.91 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 0.30 Total: -5.61 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.25 Total: -36.97 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.43 Total: -17.13 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.33 -6.96 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082292012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.903 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds